BAC Information

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BAC

Clone NameB6Ng01-164A04
Chromosome6 (Build37)
Map Location 90,308,686 - 90,437,565
singlet/doubletdoublet
Overlap geneUroc1, Zxdc, Ccdc37, Klf15
Upstream genePlxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13
Downstream geneAldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164A04.bB6Ng01-164A04.g
ACCDH956451DH956452
length1,1121,066
definitionDH956451|Mus musculus domesticus DNA, BAC clone: B6Ng01-164A04, 5' end.DH956452|Mus musculus domesticus DNA, BAC clone: B6Ng01-164A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,308,686 - 90,309,809)(90,436,484 - 90,437,565)
sequence
gaattcagtgctagagagtgtagctgtagtgaaggataataggtacagct
ggactttgtccatttctcctgcttcctctgtttctagactcccctgtctc
tgttcccccacttccctgacacattgttcttcagtcccaagaattagcat
aagcctggccctcagcacgacctagtgcaaggaatgatggcacacgcttc
cctttttctgtagacatggccgtgcagaacttcgtgggagatgcctgtcg
tggtgccacctgggttgcacttcacaatggagggggtgtaggctggtaag
aagacatcagaaagcaggctgtgggctgatatggagaacatgcggtcctc
ttggggcaggggcaggtctgggggcctgcagttctcggacttaggtctct
gaccacttgttctattgagggctttgtgtgaatacattcctcatgtgagc
tgagaaccaggggtcggtatgttggggtacagaagatggagggacagaaa
gggagacttgcataaagcaactccagagtttggcctgtacctatcatata
ggacacaaaagtcagcatgagtaacagccacattcatttccgtattccca
ttcccactataactatctctgtttaaagagtgggagtgcatggttgccag
gacaacagattctaggcttcccactcttccactcttatagctattcacac
aggtcactttccagccagcgccagggcagggtcattggggtctctatgat
ggtctctgagtttggtcatcttttctgttcctgtgacagtagaaatcccc
agcttgtcacgaggaaaggcctctctggatcacagcttcacaggttacag
ttcatggtcagttgaccacactgcatataggcagcacagtatgacaagag
cctctaggaatgcaggcagaaccattcattcatgacagggaaaggaagag
gccaagatctcatacaaagcacttctcaatgacttgagacctcccatgag
actccccccctaaaagtccaccactccacaagcagcatctacatccactc
ctagggactcattctgattgcattggcattccttgtcgttgaaatattaa
ctcggattcctc
gaattctggaacctagctggaagatgtgggtcacttatgtatgccttgca
aggtcataccaggtctgaaatcccttccttcctctgcttccggtccacca
tgatttgagttgctttgtcccacttccctgctatgatggactgaatcctc
tgagccacacagaacccttcatcagttaagttcctctcttaagtattctg
gctgctgagagcaatcagtgcagtcagccacaaaaaagaatgcaatattc
acttgcaggaaaagcaagaactggaaaggacatgataagcaaaataatcc
agatacaaggacacatttggtatgtttcctcttatgcatggaaacttatg
aataagtagaatttctaggaactgggggtggaggcacagctggggaggaa
gatggacaaggtcattgtaggatatgtgaacatatggaaccaaatctttc
ccccagaagacgaacaatcaaggccatgaaagacccacagaatgagaggg
gacactataattcatgtccagcaagggggtttagaaaaggatagagagat
ggcttggtggttaagatagttaagagcccacactgctcctgtggaggacc
tgagcctggtccccagaccccacattggatggctcagtcatcgttagctc
cagctccagaggatctgatgggctcttctggcaccacatgcacagagtgg
gcatatataaacttggccaaatactcagtaaacagttgtgggaaagtggt
ttgtacaaaaaatgttatggttttggttatttgatcattatttgaacaca
cacacacacacacacacacacacaggacaaattacaacaatcaattgttt
ccagaactgatctctatcaagcttgcatgcaaacattaactttgatcccc
aacccaatttcacaaacccagtacaaacagctaagatcccaaaagccttg
attcaaaaggcaaatggggtgggttagggagagccctacgaagtgggcgc
tctgcccccctcctccgagactactacccagcatccagctggcttcctgg
acagcttccggtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_90308686_90309809
seq2: B6Ng01-164A04.b_48_1159

seq1  GAATTCAGTGCTAGAGAGTGTAGCTGTAGTGAAGGATAATAGGTACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTAGAGAGTGTAGCTGTAGTGAAGGATAATAGGTACAGCT  50

seq1  GGACTTTGTCCATTTCTCCTGCTTCCTCTGTTTCTAGACTCCCCTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGTCCATTTCTCCTGCTTCCTCTGTTTCTAGACTCCCCTGTCTC  100

seq1  TGTTCCCCCACTTCCCTGACACATTGTTCTTCAGTCCCAAGAATTAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCCACTTCCCTGACACATTGTTCTTCAGTCCCAAGAATTAGCAT  150

seq1  AAGCCTGGCCCTCAGCACGACCTAGTGCAAGGAATGATGGCACACGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGCCCTCAGCACGACCTAGTGCAAGGAATGATGGCACACGCTTC  200

seq1  CCTTTTTCTGTAGACATGGCCGTGCAGAACTTCGTGGGAGATGCCTGTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTGTAGACATGGCCGTGCAGAACTTCGTGGGAGATGCCTGTCG  250

seq1  TGGTGCCACCTGGGTTGCACTTCACAATGGAGGGGGTGTAGGCTGGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCACCTGGGTTGCACTTCACAATGGAGGGGGTGTAGGCTGGTAAG  300

seq1  AAGACATCAGAAAGCAGGCTGTGGGCTGATATGGAGAACATGCGGTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCAGAAAGCAGGCTGTGGGCTGATATGGAGAACATGCGGTCCTC  350

seq1  TTGGGGCAGGGGCAGGTCTGGGGGCCTGCAGTTCTCGGACTTAGGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAGGGGCAGGTCTGGGGGCCTGCAGTTCTCGGACTTAGGTCTCT  400

seq1  GACCACTTGTTCTATTGAGGGCTTTGTGTGAATACATTCCTCATGTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTTGTTCTATTGAGGGCTTTGTGTGAATACATTCCTCATGTGAGC  450

seq1  TGAGAACCAGGGGTCGGTATGTTGGGGTACAGAAGATGGAGGGACAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCAGGGGTCGGTATGTTGGGGTACAGAAGATGGAGGGACAGAAA  500

seq1  GGGAGACTTGCATAAAGCAACTCCAGAGTTTGGCCTGTACCTATCATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTTGCATAAAGCAACTCCAGAGTTTGGCCTGTACCTATCATATA  550

seq1  GGACACAAAAGTCAGCATGAGTAACAGCCACATTCATTTCCGTATTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAAAGTCAGCATGAGTAACAGCCACATTCATTTCCGTATTCCCA  600

seq1  TTCCCACTATAACTATCTCTGTTTAAAGAGTGGGAGTGCATGGTTGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTATAACTATCTCTGTTTAAAGAGTGGGAGTGCATGGTTGCCAG  650

seq1  GACAACAGATTCTAGGCTTCCCACTCTTCCACTCTTATAGCTATTCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGATTCTAGGCTTCCCACTCTTCCACTCTTATAGCTATTCACAC  700

seq1  AGGTCACTTTCCAGCCAGCGCCAGGGCAGGGTCATTGGGGTCTCTATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTTTCCAGCCAGCGCCAGGGCAGGGTCATTGGGGTCTCTATGAT  750

seq1  GGTCTCTGAG-TTGGTCATC-TTTCTGTTCCTGTGACAGTAGAAATCCCC  798
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  GGTCTCTGAGTTTGGTCATCTTTTCTGTTCCTGTGACAGTAGAAATCCCC  800

seq1  AGCTTGTCACGAGGAAAGGCCTCTCTGGATCACAGCTTCACAGGTTACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTCACGAGGAAAGGCCTCTCTGGATCACAGCTTCACAGGTTACAG  850

seq1  TTCATGGTCAGTTGACCACACTGCATATAGGCAGCACAGTATGACAAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTCAGTTGACCACACTGCATATAGGCAGCACAGTATGACAAGAG  900

seq1  CCTCTAGGAATGCAGGCAGAACCATTCATTCATGACAGGGAAAAGAAGAG  948
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTCTAGGAATGCAGGCAGAACCATTCATTCATGACAGGGAAAGGAAGAG  950

seq1  GCCAAGATCTCATACAAAGGCACTTCTCAATGACTTGAAGACCTCCCATG  998
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  GCCAAGATCTCATACAAA-GCACTTCTCAATGACTTG-AGACCTCCCATG  998

seq1  AGACTCCCCCCCTTAAAAGTTCCACCACCTCCCACAAGCAAGCATCTAAC  1048
      |||||||||||| |||||| ||||||||   |||||||| ||||||| ||
seq2  AGACTCCCCCCC-TAAAAG-TCCACCAC--TCCACAAGC-AGCATCT-AC  1042

seq1  ATCCAAACTCTAGGGGACTCATTCTGATTGGCATTGGCCATTCCTCTGCT  1098
      ||||  ||||   |||||||||||||||| ||||||| ||||||| || |
seq2  ATCC--ACTCCTAGGGACTCATTCTGATT-GCATTGG-CATTCCT-TG-T  1086

seq1  GCTGGAAATATTAACTCAGATTCCTC  1124
        | ||||||||||||| ||||||||
seq2  CGTTGAAATATTAACTCGGATTCCTC  1112

seq1: chr6_90436484_90437565
seq2: B6Ng01-164A04.g_68_1133 (reverse)

seq1  TCACACCGGAAGCTGTCCAGGATGCCAGCATGAGATGCCTGGGTAAGTAG  50
      |||||||||||||||||||||| |||||| || |||| |||||| |||||
seq2  TCACACCGGAAGCTGTCCAGGAAGCCAGC-TG-GATG-CTGGGT-AGTAG  46

seq1  TCTCGGGGGGAGGGGGGCAGAGCGCCCACTTCCGTAGGGCTCCTCCCTTA  100
      |||| || ||||||||||||||||||||||| ||||||||| |||||| |
seq2  TCTC-GGAGGAGGGGGGCAGAGCGCCCACTT-CGTAGGGCT-CTCCCTAA  93

seq1  CCCACCCCCATTTGCCCTTTTTGAATCAAGGGCTTTTGGGATCTTAGCTT  150
      |||| |||||||||||  ||||||||||| ||||||||||||||||||| 
seq2  CCCA-CCCCATTTGCC--TTTTGAATCAA-GGCTTTTGGGATCTTAGCT-  138

seq1  GTTTTGTACTGGGGTTTGTGAAATTGGGTTTGGGGATCAAAGTTAATGTT  200
        |||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  -GTTTGTACT-GGGTTTGTGAAATTGGG-TTGGGGATCAAAGTTAATGTT  185

seq1  TGCATGCAAGCTTGATAGAGATCAGTTCTGGAAACAATTGATTGTTGGTA  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCATGCAAGCTTGATAGAGATCAGTTCTGGAAACAATTGATTGTT-GTA  234

seq1  ATTTGTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCAAATAATGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCAAATAATGATC  284

seq1  AAATAACCAAAACCATAACATTTTTTGTACAAACCACTTTCCCACAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCAAAACCATAACATTTTTTGTACAAACCACTTTCCCACAACTG  334

seq1  TTTACTGAGTATTTGGCCAAGTTTATATATGCCCACTCTGTGCATGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAGTATTTGGCCAAGTTTATATATGCCCACTCTGTGCATGTGGT  384

seq1  GCCAGAAGAGCCCATCAGATCCTCTGGAGCTGGAGCTAACGATGACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGAGCCCATCAGATCCTCTGGAGCTGGAGCTAACGATGACTGAG  434

seq1  CCATCCAATGTGGGGTCTGGGGACCAGGCTCAGGTCCTCCACAGGAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAATGTGGGGTCTGGGGACCAGGCTCAGGTCCTCCACAGGAGCAG  484

seq1  TGTGGGCTCTTAACTATCTTAACCACCAAGCCATCTCTCTATCCTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTCTTAACTATCTTAACCACCAAGCCATCTCTCTATCCTTTTCT  534

seq1  AAACCCCCTTGCTGGACATGAATTATAGTGTCCCCTCTCATTCTGTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCTTGCTGGACATGAATTATAGTGTCCCCTCTCATTCTGTGGGT  584

seq1  CTTTCATGGCCTTGATTGTTCGTCTTCTGGGGGAAAGATTTGGTTCCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGGCCTTGATTGTTCGTCTTCTGGGGGAAAGATTTGGTTCCATA  634

seq1  TGTTCACATATCCTACAATGACCTTGTCCATCTTCCTCCCCAGCTGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACATATCCTACAATGACCTTGTCCATCTTCCTCCCCAGCTGTGCC  684

seq1  TCCACCCCCAGTTCCTAGAAATTCTACTTATTCATAAGTTTCCATGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCCAGTTCCTAGAAATTCTACTTATTCATAAGTTTCCATGCATA  734

seq1  AGAGGAAACATACCAAATGTGTCCTTGTATCTGGATTATTTTGCTTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAACATACCAAATGTGTCCTTGTATCTGGATTATTTTGCTTATCA  784

seq1  TGTCCTTTCCAGTTCTTGCTTTTCCTGCAAGTGAATATTGCATTCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCCAGTTCTTGCTTTTCCTGCAAGTGAATATTGCATTCTTTTT  834

seq1  TGTGGCTGACTGCACTGATTGCTCTCAGCAGCCAGAATACTTAAGAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGACTGCACTGATTGCTCTCAGCAGCCAGAATACTTAAGAGAGG  884

seq1  AACTTAACTGATGAAGGGTTCTGTGTGGCTCAGAGGATTCAGTCCATCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTGATGAAGGGTTCTGTGTGGCTCAGAGGATTCAGTCCATCAT  934

seq1  AGCAGGGAAGTGGGACAAAGCAACTCAAATCATGGTGGACCGGAAGCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAAGTGGGACAAAGCAACTCAAATCATGGTGGACCGGAAGCAGA  984

seq1  GGAAGGAAGGGATTTCAGACCTGGTATGACCTTGCAAGGCATACATAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGGATTTCAGACCTGGTATGACCTTGCAAGGCATACATAAGT  1034

seq1  GACCCACATCTTCCAGCTAGGTTCCAGAATTC  1082
      ||||||||||||||||||||||||||||||||
seq2  GACCCACATCTTCCAGCTAGGTTCCAGAATTC  1066