BAC Information

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BAC

Clone NameB6Ng01-164B01
Chromosome6 (Build37)
Map Location 144,550,901 - 144,791,209
singlet/doubletdoublet
Overlap gene4933425H06Rik, EG665149
Upstream geneSox5
Downstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164B01.bB6Ng01-164B01.g
ACCDH956491DH956492
length323777
definitionDH956491|Mus musculus domesticus DNA, BAC clone: B6Ng01-164B01, 5' end.DH956492|Mus musculus domesticus DNA, BAC clone: B6Ng01-164B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,550,901 - 144,551,223)(144,790,440 - 144,791,209)
sequence
actggaaagacacagagggtgattgcatctgagggggtgaggagagcagg
acacaggctcatacaggaatttgggggctggggagttccagggtagagat
ttccacagtggggattggtgagatttcaagccaagcccagggactgccgg
attttgtgctcagggattggtgggtttagtaaggttttttacccggaagc
gggctcagaccttttatcatatatttttgttggggggagtgagtgttctg
gggcggtggaaggacaacctcaggcataatggttcacctctatctttttt
tgactcagtttctgcttgccatt
gaattccagtttctggtggtccattgtttcaatcatagtctgatagccaa
agacagggggtggggcggtaccttctggatatttccatccctgccaagcc
ggcggtagtatttgttgaagctccgacacgaatgtgactttttctagtag
agattgtagcagaaggaccaaatgtgacagaaagattgtgcatcgggatt
tcagatgccagcaaaccaatggtttgagtttatatacactacaaaaacat
gtgcatattggaaaaaaattaaaatacacaggaatgcttagacaagaaga
gaactccatcactcctccacccaatcacctcgcctgctctccaaggcctt
tccacatctctttctcaggggaaccccggctaacactgtgtgcaaaccct
ttccgttggtatgcgtgtgtttgtctgtgctcacgcacatggatagttaa
atgaagatagtcttcctcctagaaacggtaatgctactctgcaatttgac
tttcttccccaccaggggttcattaaatgtcagaacatggagattctctt
tcctgatgcaataggggaactcagctggcacgctgcgtttctcactgtaa
gtgtgcagctgcttgcttgagtgtccctctttatatgaataatttgtgtg
ccttcttaccattgtgcactttgttttttatgttgggtatgaccactttt
gtactttcatatctgggtacaaatttaagtgtcctttttgtacaataaat
taaaaaagtaaaatgcttaggtttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_144550901_144551223
seq2: B6Ng01-164B01.b_50_372

seq1  ACTGGAAAGACACAGAGGGTGATTGCATCTGAGGGGGTGAGGAGAGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAGACACAGAGGGTGATTGCATCTGAGGGGGTGAGGAGAGCAGG  50

seq1  ACACAGGCTCATACAGGAATTTGGGGGCTGGGGAGTTCCAGGGTAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCTCATACAGGAATTTGGGGGCTGGGGAGTTCCAGGGTAGAGAT  100

seq1  TTCCACAGTGGGGATTGGTGAGATTTCAAGCCAAGCCCAGGGACTGCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGTGGGGATTGGTGAGATTTCAAGCCAAGCCCAGGGACTGCCGG  150

seq1  ATTTTGTGCTCAGGGATTGGTGGGTTTAGTAAGGTTTTTTACCCGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGCTCAGGGATTGGTGGGTTTAGTAAGGTTTTTTACCCGGAAGC  200

seq1  GGGCTCAGACCTTTTATCATATATTTTTGTTGGGGGGAGTGAGTGTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGACCTTTTATCATATATTTTTGTTGGGGGGAGTGAGTGTTCTG  250

seq1  GGGCGGTGGAAGGACAACCTCAGGCAGCATGGCTCACCTCCATCTTTCTT  300
      ||||||||||||||||||||||||||  |||| ||||||| |||||| ||
seq2  GGGCGGTGGAAGGACAACCTCAGGCATAATGGTTCACCTCTATCTTTTTT  300

seq1  TGACTCAGTCTCTGCTTGCCATT  323
      ||||||||| |||||||||||||
seq2  TGACTCAGTTTCTGCTTGCCATT  323

seq1: chr6_144790440_144791209
seq2: B6Ng01-164B01.g_68_844 (reverse)

seq1  TTAAAACCTAAGCATTTTAC-TTTTTAAATTATTGTAC-AAAAGGACACT  48
      || ||||||||||||||||| ||||||| ||||||||| |||||||||||
seq2  TTTAAACCTAAGCATTTTACTTTTTTAATTTATTGTACAAAAAGGACACT  50

seq1  TAAATTTGTACCCAGATATG-AAGTACAAACGTGGTCATA-CCAACATAA  96
      |||||||||||||||||||| ||||||||| ||||||||| |||||||||
seq2  TAAATTTGTACCCAGATATGAAAGTACAAAAGTGGTCATACCCAACATAA  100

seq1  AAA--CAAGTGCACAATGGTAAGAAGGCACAC-AATTATTCATATAAAGA  143
      |||   |||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAACAAAGTGCACAATGGTAAGAAGGCACACAAATTATTCATATAAAGA  150

seq1  GGGACACTCAAGCAAGCAGCTGCACACTTACAGTGAGAAACGCAGCGTGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTCAAGCAAGCAGCTGCACACTTACAGTGAGAAACGCAGCGTGC  200

seq1  CAGCTGAGTTCCCCTATTGCATCAGGAAAGAGAATCTCCATGTTCTGACA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGTTCCCCTATTGCATCAGGAAAGAGAATCTCCATGTTCTGACA  250

seq1  TTTAATGAACCCCTGGTGGGGAAGAAAGTCAAATTGCAGAGTAGCATTAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAACCCCTGGTGGGGAAGAAAGTCAAATTGCAGAGTAGCATTAC  300

seq1  CGTTTCTAGGAGGAAGACTATCTTCATTTAACTATCCATGTGCGTGAGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTAGGAGGAAGACTATCTTCATTTAACTATCCATGTGCGTGAGCA  350

seq1  CAGACAAACACACGCATACCAACGGAAAGGGTTTGCACACAGTGTTAGCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAACACACGCATACCAACGGAAAGGGTTTGCACACAGTGTTAGCC  400

seq1  GGGGTTCCCCTGAGAAAGAGATGTGGAAAGGCCTTGGAGAGCAGGCGAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCCCCTGAGAAAGAGATGTGGAAAGGCCTTGGAGAGCAGGCGAGG  450

seq1  TGATTGGGTGGAGGAGTGATGGAGTTCTCTTCTTGTCTAAGCATTCCTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGGTGGAGGAGTGATGGAGTTCTCTTCTTGTCTAAGCATTCCTGT  500

seq1  GTATTTTAATTTTTTTCCAATATGCACATGTTTTTGTAGTGTATATAAAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAATTTTTTTCCAATATGCACATGTTTTTGTAGTGTATATAAAC  550

seq1  TCAAACCATTGGTTTGCTGGCATCTGAAATCCCGATGCACAATCTTTCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCATTGGTTTGCTGGCATCTGAAATCCCGATGCACAATCTTTCTG  600

seq1  TCACATTTGGTCCTTCTGCTACAATCTCTACTAGAAAAAGTCACATTCGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTGGTCCTTCTGCTACAATCTCTACTAGAAAAAGTCACATTCGT  650

seq1  GTCGGAGCTTCAACAAATACTACCGCCGGCTTGGCAGGGATGGAAATATC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGAGCTTCAACAAATACTACCGCCGGCTTGGCAGGGATGGAAATATC  700

seq1  CAGAAGGTACCGCCCCACCCCCTGTCTTTGGCTATCAGACTATGATTGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTACCGCCCCACCCCCTGTCTTTGGCTATCAGACTATGATTGAA  750

seq1  ACAATGGACCACCAGAAACTGGAATTC  770
      |||||||||||||||||||||||||||
seq2  ACAATGGACCACCAGAAACTGGAATTC  777