BAC Information

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BAC

Clone NameB6Ng01-164C05
Chromosome6 (Build37)
Map Location 60,215,864 - 60,347,152
singlet/doubletdoublet
Overlap geneLOC100041706, LOC100041717, A530053G22Rik
Upstream geneGprin3, EG634166, EG627108, EG434019, LOC671300, EG627178
Downstream geneLOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164C05.bB6Ng01-164C05.g
ACCDH956547DH956548
length930990
definitionDH956547|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C05, 5' end.DH956548|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,215,864 - 60,217,011)(60,346,621 - 60,347,152)
sequence
gaattcatggcacatatctaaacataataaaaacaatatattacaaacta
ttagccaacgtaaaattaaatgaaagaaacttgaagcaattccactaaaa
tcatgaataagacaatgctatccattctctccctatctatttaatataat
atgtgatgttttacactctagttcctcataatattctttacctacaactt
catttgctatatcaggtataaataattataagggcagtctttgtctttct
cttattttacataaattacattctatgttacacatacatcatcatggctt
atgggcttatcattaatggctcttgtagcatagagggttgattaaactcc
ataatatttattcaaagcttcaatcctgaggtagtgttcaattttattaa
gacaaaataattttaaaaaattagtttttaagaaagtttggcccaaacga
atttattatatttttattatattaaaatatatattatactatggtatatt
atattatcacaaaacagttaaaatggaggaattcctcagcattcattgag
atataattatatctatcaaattatctcatcagcttttttataaacataca
taaataaaggccatctcaagatacattgttatagtacttatcaaaaaata
gaaaaaaatacatgttggaaatgaaatcactgttactcactacaaaacaa
tgttcatgagacccatcatagtgttcgatcttgatctcatcagctgtctc
cagaagtctatggtggatactaaatgcagactctatttattattttccag
gaaccagtgtaagcaaatctgtcccagtgaaggttttttttttttgtttt
gttttgttttttgttttgtttttaaagaaagatgtacagagaacagtctg
atcttcactctctgtttcactaattgggtc
gaattcatcaggagacattatcaaagtcacattcttcacctgatcataca
tgggaatattttttgtatttcaaaatttaatagctacaattgtataaaac
tcttaaagatatcaggtatttcaattacttttcttttgttgtaatgtttc
tttcaggacatttccaaaaataccttaatgaggcttgttgaaggctagat
atgtctgtttgggataaactgaattgaggccttggagctagcattttacc
actcagcagactagctctgagggagaaaaccagaacttcctttgacttac
aagagtctacttgaatactttgagggctataaagaaggcagaaggaagtt
aacagggaaaataataacacatacacacacacacacacacacagagtcag
tgaatgaagcaagcaatctacaaaaattctaattttccttccattacata
tatatttcagaaaaatctctcaggtagcataaacattacaatgtgattgt
attatagtttctttttatgaatgattattttaaaaagtattttctctaat
acctctacttgaaaaaacaacatatatattacatatatgaaaaataaaac
aaatcattcctacaaacccacacacattcccaaataagccacttgttata
gattaggaaagtatgtgaatgacatgtaattttctcagccattttctttt
tactagatagtttgcaatttgtggttaataaagataggattaattattta
tggtttatcataaaatgtaacctcatataaatcttaaaataataaaaaat
ctaaacatttatataaaaaaatctatcagtcattagaacgttaaatcctt
agtgtgctcatctaccgatcaccattgtttttattgaatcatatcttgaa
gatctgggcataacagctacagaaattaatcatcaccttgatcacatgcc
cagttctagaaggaatccctgaaaaggtagttgctggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_60215864_60217011
seq2: B6Ng01-164C05.b_46_1176

seq1  GAATTCATGGCACATATCTAAACATAATAAAAACAATATATTACAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCACATATCTAAACATAATAAAAACAATATATTACAAACTA  50

seq1  TTAGCCAACGTAAAATTAAATGAAAGAAACTTGAAGCAATTCCACTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAACGTAAAATTAAATGAAAGAAACTTGAAGCAATTCCACTAAAA  100

seq1  TCATGAATAAGACAATGCTATCCATTCTCTCCCTATCTATTTAATATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATAAGACAATGCTATCCATTCTCTCCCTATCTATTTAATATAAT  150

seq1  ATGTGATGTTTTACACTCTAGTTCCTCATAATATTCTTTACCTACAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGTTTTACACTCTAGTTCCTCATAATATTCTTTACCTACAACTT  200

seq1  CATTTGCTATATCAGGTATAAATAATTATAAGGGCAGTCTTTGTCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTATATCAGGTATAAATAATTATAAGGGCAGTCTTTGTCTTTCT  250

seq1  CTTATTTTACATAAATTACATTCTATGTTACACATACATCATCATGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTACATAAATTACATTCTATGTTACACATACATCATCATGGCTT  300

seq1  ATGGGCTTATCATTAATGGCTCTTGTAGCATAGAGGGTTGATTAAACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTATCATTAATGGCTCTTGTAGCATAGAGGGTTGATTAAACTCC  350

seq1  ATAATATTTATTCAAAGCTTCAATCCTGAGGTAGTGTTCAATTTTATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTATTCAAAGCTTCAATCCTGAGGTAGTGTTCAATTTTATTAA  400

seq1  GACAAAATAATTTTAAAAAATTAGTTTTTAAGAAAGTTTGGCCCAAACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATAATTTTAAAAAATTAGTTTTTAAGAAAGTTTGGCCCAAACGA  450

seq1  ATTTATTATATTTTTATTATATTAAAATATATATTATACTATGGTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATATTTTTATTATATTAAAATATATATTATACTATGGTATATT  500

seq1  ATATTATCACAAAACAGTTAAAATGGAGGAATTCCTCAGCATTCATTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCACAAAACAGTTAAAATGGAGGAATTCCTCAGCATTCATTGAG  550

seq1  ATATAATTATATCTATCAAATTATCTCATCAGCTTTTTTATAAACATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTATATCTATCAAATTATCTCATCAGCTTTTTTATAAACATACA  600

seq1  TAAATAAAGGCCATCTCAAGATACATTGTTATAGTACTTATCAAAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGGCCATCTCAAGATACATTGTTATAGTACTTATCAAAAAATA  650

seq1  GAAAAAAATACATGTTGGAAATGAAATCACTGTTACTCACTACAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATACATGTTGGAAATGAAATCACTGTTACTCACTACAAAACAA  700

seq1  TGTTCATGAGACCCATCATAGTGTTCGATCTTGATCTCATCAGCTGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGAGACCCATCATAGTGTTCGATCTTGATCTCATCAGCTGTCTC  750

seq1  CAGAAGTCTATGGTGGATACTAAATGCAGACTCTATTTATTATTTTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCTATGGTGGATACTAAATGCAGACTCTATTTATTATTTTCCAG  800

seq1  GAACCAGTGTAAGCAAATCTGTCCCAGTGAAGGTTTTTTTTTTTTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGTGTAAGCAAATCTGTCCCAGTGAAGGTTTTTTTTTTTTGTTTT  850

seq1  GTTTTGTTTTTTGTTTTGTTTTTTAAAGAAAGATGTACAGAGAACAGTCT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTGTTTTG-TTTTTAAAGAAAGATGTACAGAGAACAGTCT  899

seq1  GATCTTCACTCTCTGTTTCACTAATTGGGTCAGAAAAATAAACAAATATT  950
      |||||||||||||||||||||||||||||||                 ||
seq2  GATCTTCACTCTCTGTTTCACTAATTGGGTCNNNNNNNNNNNNNNNNNTT  949

seq1  CATGAGACACACCCTGTTGTTCTGCCATTTGCGCTGAATATAATAGGTCA  1000
      |||||||||||||||||   ||||||||||||||||||||||||| ||||
seq2  CATGAGACACACCCTGT--GTCTGCCATTTGCGCTGAATATAATA-GTCA  996

seq1  ATTTTAAGTTAAGATTCTCTTCAAACTTACCTCTTCTGTAAATGTCCCAG  1050
      |||||||| ||||||||||||||||||   ||||||||| ||||| ||||
seq2  ATTTTAAG-TAAGATTCTCTTCAAACT--ACTCTTCTGT-AATGT-CCAG  1041

seq1  CTCCTACATCAGCCCTTCTCTGCCAACCAGAATATGATATGCAGAGAAGG  1100
      || ||||||||||||||||||||||  ||| ||||||||||||||||| |
seq2  CT-CTACATCAGCCCTTCTCTGCCA--CAG-ATATGATATGCAGAGAA-G  1086

seq1  TGCTAGCTTGGGGACACAGTGTAGAATGTCTTAATTGTTTTCATGACA  1148
      |||||||||||||| |||| |||||||||| |||||| ||||||||||
seq2  TGCTAGCTTGGGGAAACAG-GTAGAATGTC-TAATTG-TTTCATGACA  1131

seq1: chr6_60346621_60347152
seq2: B6Ng01-164C05.g_68_599 (reverse)

seq1  TAAAATAATCATTCATAAAAAGAAACTATAATACAATCACATTGTAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATCATTCATAAAAAGAAACTATAATACAATCACATTGTAATGT  50

seq1  TTATGCTACCTGAGAGATTTTTCTGAAATATATATGTAATGGAAGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTACCTGAGAGATTTTTCTGAAATATATATGTAATGGAAGGAAAA  100

seq1  TTAGAATTTTTGTAGATTGCTTGCTTCATTCACTGACTCTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTTTGTAGATTGCTTGCTTCATTCACTGACTCTGTGTGTGTGT  150

seq1  GTGTGTGTGTATGTGTTATTATTTTCCCTGTTAACTTCCTTCTGCCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTATGTGTTATTATTTTCCCTGTTAACTTCCTTCTGCCTTCT  200

seq1  TTATAGCCCTCAAAGTATTCAAGTAGACTCTTGTAAGTCAAAGGAAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCCCTCAAAGTATTCAAGTAGACTCTTGTAAGTCAAAGGAAGTTC  250

seq1  TGGTTTTCTCCCTCAGAGCTAGTCTGCTGAGTGGTAAAATGCTAGCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCTCCCTCAGAGCTAGTCTGCTGAGTGGTAAAATGCTAGCTCCA  300

seq1  AGGCCTCAATTCAGTTTATCCCAAACAGACATATCTAGCCTTCAACAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCAATTCAGTTTATCCCAAACAGACATATCTAGCCTTCAACAAGC  350

seq1  CTCATTAAGGTATTTTTGGAAATGTCCTGAAAGAAACATTACAACAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAGGTATTTTTGGAAATGTCCTGAAAGAAACATTACAACAAAAG  400

seq1  AAAAGTAATTGAAATACCTGATATCTTTAAGAGTTTTATACAATTGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAATTGAAATACCTGATATCTTTAAGAGTTTTATACAATTGTAGC  450

seq1  TATTAAATTTTGAAATACAAAAAATATTCCCATGTATGATCAGGTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTTTGAAATACAAAAAATATTCCCATGTATGATCAGGTGAAGA  500

seq1  ATGTGACTTTGATAATGTCTCCTGATGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  ATGTGACTTTGATAATGTCTCCTGATGAATTC  532