BAC Information

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BAC

Clone NameB6Ng01-164E21
Chromosome6 (Build37)
Map Location 41,016,607 - 41,017,780
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790
Downstream geneTcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164E21.bB6Ng01-164E21.g
ACCDH956667DH956668
length1,174491
definitionDH956667|Mus musculus domesticus DNA, BAC clone: B6Ng01-164E21, 5' end.DH956668|Mus musculus domesticus DNA, BAC clone: B6Ng01-164E21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgaggatactcatagggctacactgtagcatattgtgcccacg
atgactctctggtttctatccttatttattcttattaggtcatcctagca
tccctgagtgcagtacagactatgtcattgtggacttctcttccagtttg
ttaggaaccaaagccctagctttgaaggtactcagaaaattctcatctgc
atttacataagagtaattcttaaatttctcatgtcttttttatgtcctct
gtcttctccagaggaaatatggaatctggagtcacacaaacattcagtta
tgatgttacagacatgggacagaatgtcatttagagatataacacaattt
ctggtcattttgtcacattttcataccaacagacactaggaaaaggtgtg
gagtttctggcttcattctatgatacagttcatttggaaagggctgacgt
tttcagtactcaacagagatgcctgatggattgttctccactctgaagat
tcagcatgttcagccagagactccactatgtatgccagcagcttggccac
agccctacagaaaattttcctgtccctgcaaaaattgaatattctcccat
ctttccggaatgtcacctacctttcatgcctaaggaggtggagacagatg
atcaaggagaaaggcacatccaatggaagtaagaaagtccaatagccaga
ggccacctccagtagataggcatgacctccagtcaaaggatggggccacc
cacccatctcaaagattttaacacaaaaaggttcctgtgcaaaggaaaga
tggacaaaaatggagcagagactgaaggaaggaccatttgggaaccacca
cacccagtgatccatcctgtcttcagacaccaaaccccaacactattgct
gctgccaagaggcacttgctgagacgaacctggtgtggcggggttcctgg
gaggttctgccagaaattgatcaaatgcagatatggatatttgcagccaa
ctatctgactgagctcagagtccctgatgggggacctggcagaaggactg
gaagaacagaggggaatcccataggaagaacaatgttcagcttgcctgac
cactaatgctccaaggactagaacaaccagccaagaaagtatacattgtt
ccgaaactaatgtagcctaggatg
tctgtagaatttttggggtcacgtatatatactattatattattggcaaa
tagtgatattgtgacttcttcctttccagattgtatccctttgatctcct
tttgttgtcgaattgctctggctagaacttcaagtactatattgaatagg
tagggagagtgtgggcaggcttgtctagttcctgattttagtggcattgc
ttcaagtttctccatatttactttgattttgtctgctgctttgctgcata
ttgcttttactatgtttagatatgggtcttgaattcctgatctttccaaa
acttttcccatgaagggatgttgaattttatcaaatgctttttcaatatc
taatgagatgatcatgtgggtttttttgttgttgttgggtttgtttatat
agtggattacattgataggtttccacatattgaaccatccctgtatccct
ggcatgaagcctactttatcatggtgaatgatcattttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41016607_41017780
seq2: B6Ng01-164E21.b_46_1219

seq1  GAATTCTTGAGGATACTCATAGGGCTACACTGTAGCATATTGTGCCCACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGGATACTCATAGGGCTACACTGTAGCATATTGTGCCCACG  50

seq1  ATGACTCTCTGGTTTCTATCCTTATTTATTCTTATTAGGTCATCCTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTCTGGTTTCTATCCTTATTTATTCTTATTAGGTCATCCTAGCA  100

seq1  TCCCTGAGTGCAGTACAGACTATGTCATTGTGGACTTCTCTTCCAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGTGCAGTACAGACTATGTCATTGTGGACTTCTCTTCCAGTTTG  150

seq1  TTAGGAACCAAAGCCCTAGCTTTGAAGGTACTCAGAAAATTCTCATCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAACCAAAGCCCTAGCTTTGAAGGTACTCAGAAAATTCTCATCTGC  200

seq1  ATTTACATAAGAGTAATTCTTAAATTTCTCATGTCTTTTTTATGTCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATAAGAGTAATTCTTAAATTTCTCATGTCTTTTTTATGTCCTCT  250

seq1  GTCTTCTCCAGAGGAAATATGGAATCTGGAGTCACACAAACATTCAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCCAGAGGAAATATGGAATCTGGAGTCACACAAACATTCAGTTA  300

seq1  TGATGTTACAGACATGGGACAGAATGTCATTTAGAGATATAACACAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTACAGACATGGGACAGAATGTCATTTAGAGATATAACACAATTT  350

seq1  CTGGTCATTTTGTCACATTTTCATACCAACAGACACTAGGAAAAGGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATTTTGTCACATTTTCATACCAACAGACACTAGGAAAAGGTGTG  400

seq1  GAGTTTCTGGCTTCATTCTATGATACAGTTCATTTGGAAAGGGCTGACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTGGCTTCATTCTATGATACAGTTCATTTGGAAAGGGCTGACGT  450

seq1  TTTCAGTACTCAACAGAGATGCCTGATGGATTGTTCTCCACTCTGAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTACTCAACAGAGATGCCTGATGGATTGTTCTCCACTCTGAAGAT  500

seq1  TCAGCATGTTCAGCCAGAGACTCCACTATGTATGCCAGCAGCTTGGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGTTCAGCCAGAGACTCCACTATGTATGCCAGCAGCTTGGCCAC  550

seq1  AGCCCTACAGAAAATTTTCCTGTCCCTGCAAAAATTGAATATTCTCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTACAGAAAATTTTCCTGTCCCTGCAAAAATTGAATATTCTCCCAT  600

seq1  CTTTCCGGAATGTCACCTACCTTTCATGCCTAAGGAGGTGGAGACAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCGGAATGTCACCTACCTTTCATGCCTAAGGAGGTGGAGACAGATG  650

seq1  ATCAAGGAGAAAGGCACATCCAATGGAAGTAAGAAAGTCCAATAGCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAGAAAGGCACATCCAATGGAAGTAAGAAAGTCCAATAGCCAGA  700

seq1  GGCCACCTCCAGTAGATAGGCATGACCTCCAGTCAAAGGATGGGGCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCTCCAGTAGATAGGCATGACCTCCAGTCAAAGGATGGGGCCACC  750

seq1  CACCCATCTCAAAGATTTTAACACAAAAAGGTTCCTGTGCAAAGGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCTCAAAGATTTTAACACAAAAAGGTTCCTGTGCAAAGGAAAGA  800

seq1  TGGACAAAAATGGAGCAGAGACTGAAGGAAGGACCATTTGGGAACCACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAAATGGAGCAGAGACTGAAGGAAGGACCATTTGGGAACCACCA  850

seq1  CACCCAGTGATCCATCCTGTCTTCAGACACCAAACCCCAACACTATTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGATCCATCCTGTCTTCAGACACCAAACCCCAACACTATTGCT  900

seq1  GCTGCCAAGAGGCACTTGCTGAGACGAACCTGGTGTGGCGGGGTTCCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAAGAGGCACTTGCTGAGACGAACCTGGTGTGGCGGGGTTCCTGG  950

seq1  GAGGTTCTGCCAGAAATTGATCAAATGCAGATATGGATATTTGCAGCCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTGCCAGAAATTGATCAAATGCAGATATGGATATTTGCAGCCAA  1000

seq1  CTATCTGACTGAGCTCAGAGTCCCTGATGGGGGACCTGGCAGAAGGACTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGACTGAGCTCAGAGTCCCTGATGGGGGACCTGGCAGAAGGACTG  1050

seq1  GAAGAGCAGAGGGGAATCCCATAGGAAGAACAATG-TCAGCTGGCTGGAC  1099
      ||||| ||||||||||||||||||||||||||||| |||||| ||  |||
seq2  GAAGAACAGAGGGGAATCCCATAGGAAGAACAATGTTCAGCTTGCCTGAC  1100

seq1  CACCTAATGCTCCCAAGGACTAG-ACCACCAGCCAAG-AAGTATACATGG  1147
      || |||||||| ||||||||||| || |||||||||| |||||||||| |
seq2  CA-CTAATGCT-CCAAGGACTAGAACAACCAGCCAAGAAAGTATACATTG  1148

seq1  CTCCAGATACATATGTAGCCTAGGATG  1174
       ||| || ||  |||||||||||||||
seq2  TTCC-GAAACTAATGTAGCCTAGGATG  1174