BAC Information

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BAC

Clone NameB6Ng01-164H13
Chromosome6 (Build37)12 (Build37)
Map Location 18,835,442 - 18,835,96894,622,858 - 94,623,885
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164H13.bB6Ng01-164H13.g
ACCDH956787DH956788
length9841,021
definitionDH956787|Mus musculus domesticus DNA, BAC clone: B6Ng01-164H13, 5' end.DH956788|Mus musculus domesticus DNA, BAC clone: B6Ng01-164H13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(94,622,858 - 94,623,885)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacacgataacaaccagttgtgcctgcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttacaattgctct
gtagtaaagctttaggtcaggcatggtgattccaccagaggttcttttat
ccttgagaagagtttttgctatcctaggttttttgttattccagatgaat
ttgcaaattgctccttctaattcgttgaagaattgagttgtaattttgat
ggggattgcattgaatctgtagattgcttttggcaagatagccattttta
caatgttgatcctgccaatccatgagcatgggagatctttccatcttctg
agatcttctttaatttctttcttcagggacttgaagttttatcatacaga
tctttcacttccttagtagagtcacgccgagatatttatattattgtgac
tattgagaaggtgttgtttccctatttcttctca
gaattctcttgggccttgcctatagagcaaatctattgcagaatataaac
ggaagcagagcatctcaggaagagcacttgttagttattagcttgtccta
agatggctcctgaactgtaactatcaatgaagtagtatttagtgatataa
ttacattctcctaaatcaacttcaagtagttaacaatgcagccattaaaa
acattctctaattaaatctgttaaaaataacaaaaatactggttctattt
aagtatatggcctgctcatgactgccctggaatcagatgggcataatcat
atccaaatgaatcctcaactaagaaaggagaatcctgctaatggaaaatt
acaaagaattagctcattaaaaatgaataataacaatttagaaaacattt
atacataaccctagaaaaacaagtgctgaagtttggtttctcaattgcta
acaatttggcaaaggtttacttaaacaggaaaaagtgaaattctttttca
ggctttgaagctaagtcaacccatacttaatgaagtgaacattttttggt
aatttttagacaattatgtataatttgaattactactaatttctttccaa
agtctactgaataattttgtgtgcatttttattatttttggattgttggt
atatctggaaataaagtaggtgctaatggtaccaaggggacctgtgaata
tattcaaatatcaatcacatagtttgaaaaccaacaagagattaaaaaaa
aattaatgacctcttttgctaacactccatggtaccttcctgtatcaaag
atgcaggggtgaaggttttctgtagacaccaagtcaacatctccgtgttc
catgaactgggtaggtgatgtcttcagcaatggggcctcactgtcaattt
gtagagagcaactttcagattttcacatccagtttgttgtggatttccat
gtgtccatcttggccaagaagtcatttggagtactcaaacctaataaagg
agttttttagagaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-164H13.b_51_578 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCAGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGTGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr12_94622858_94623885
seq2: B6Ng01-164H13.g_66_1086 (reverse)

seq1  TTTTTTTTTCTCTAAAAAAACTCCTTTATTAGGTTTGAGTTACTTCCAAA  50
      ||||||||||||| ||||||||||||||||||||||||| ||| ||||||
seq2  TTTTTTTTTCTCT-AAAAAACTCCTTTATTAGGTTTGAG-TAC-TCCAAA  47

seq1  TGACTTCTTGGCCAAGATGGACACATGGAAATCCACAAACAAACCTGGAT  100
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  TGACTTCTTGGCCAAGATGGACACATGGAAATCCAC-AACAAA-CTGGAT  95

seq1  GTTGAAAATCCTGAAAGTTGCTCTCTACAAATTGACAGTGAGGCCCCATT  150
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  G-TGAAAAT-CTGAAAGTTGCTCTCTACAAATTGACAGTGAGGCCCCATT  143

seq1  GCTGAAGACATCACCTACCCAGTTCATGGAACACGGAGATGTTGACTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGACATCACCTACCCAGTTCATGGAACACGGAGATGTTGACTTGG  193

seq1  TGTCTACAGAAAACCTTCACCCCTGCATCTTTGATACAGGAAGGTACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACAGAAAACCTTCACCCCTGCATCTTTGATACAGGAAGGTACCAT  243

seq1  GGAGTGTTAGCAAAAGAGGTCATTAATTTTTTTTTAATCTCTTGTTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTAGCAAAAGAGGTCATTAATTTTTTTTTAATCTCTTGTTGGTT  293

seq1  TTCAAACTATGTGATTGATATTTGAATATATTCACAGGTCCCCTTGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTATGTGATTGATATTTGAATATATTCACAGGTCCCCTTGGTAC  343

seq1  CATTAGCACCTACTTTATTTCCAGATATACCAACAATCCAAAAATAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCACCTACTTTATTTCCAGATATACCAACAATCCAAAAATAATAA  393

seq1  AAATGCACACAAAATTATTCAGTAGACTTTGGAAAGAAATTAGTAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACACAAAATTATTCAGTAGACTTTGGAAAGAAATTAGTAGTAAT  443

seq1  TCAAATTATACATAATTGTCTAAAAATTACCAAAAAATGTTCACTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATACATAATTGTCTAAAAATTACCAAAAAATGTTCACTTCATT  493

seq1  AAGTATGGGTTGACTTAGCTTCAAAGCCTGAAAAAGAATTTCACTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGGTTGACTTAGCTTCAAAGCCTGAAAAAGAATTTCACTTTTTC  543

seq1  CTGTTTAAGTAAACCTTTGCCAAATTGTTAGCAATTGAGAAACCAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAGTAAACCTTTGCCAAATTGTTAGCAATTGAGAAACCAAACTT  593

seq1  CAGCACTTGTTTTTCTAGGGTTATGTATAAATGTTTTCTAAATTGTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGTTTTTCTAGGGTTATGTATAAATGTTTTCTAAATTGTTATT  643

seq1  ATTCATTTTTAATGAGCTAATTCTTTGTAATTTTCCATTAGCAGGATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTAATGAGCTAATTCTTTGTAATTTTCCATTAGCAGGATTCT  693

seq1  CCTTTCTTAGTTGAGGATTCATTTGGATATGATTATGCCCATCTGATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTAGTTGAGGATTCATTTGGATATGATTATGCCCATCTGATTCC  743

seq1  AGGGCAGTCATGAGCAGGCCATATACTTAAATAGAACCAGTATTTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGTCATGAGCAGGCCATATACTTAAATAGAACCAGTATTTTTGTT  793

seq1  ATTTTTAACAGATTTAATTAGAGAATGTTTTTAATGGCTGCATTGTTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAACAGATTTAATTAGAGAATGTTTTTAATGGCTGCATTGTTAAC  843

seq1  TACTTGAAGTTGATTTAGGAGAATGTAATTATATCACTAAATACTACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAGTTGATTTAGGAGAATGTAATTATATCACTAAATACTACTTC  893

seq1  ATTGATAGTTACAGTTCAGGAGCCATCTTAGGACAAGCTAATAACTAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAGTTACAGTTCAGGAGCCATCTTAGGACAAGCTAATAACTAACA  943

seq1  AGTGCTCTTCCTGAGATGCTCTGCTTCCGTTTATATTCTGCAATAGATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTTCCTGAGATGCTCTGCTTCCGTTTATATTCTGCAATAGATTT  993

seq1  GCTCTATAGGCAAGGCCCAAGAGAATTC  1028
      ||||||||||||||||||||||||||||
seq2  GCTCTATAGGCAAGGCCCAAGAGAATTC  1021