BAC Information

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BAC

Clone NameB6Ng01-164N04
Chromosome6 (Build37)
Map Location 126,100,730 - 126,101,837
singlet/doubletsinglet
Overlap geneNtf3
Upstream geneA930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
Downstream geneLOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164N04.bB6Ng01-164N04.g
ACCDH957047DH957048
length1,107299
definitionDH957047|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N04, 5' end.DH957048|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacgtctaaggctcttcaggagcacacattcagcagtggatgtt
acacatccagctccagcatgcctgaaggcatccacaacagtatcttccac
agaggtgtaagagagaaacccagggattgcaaatagctccatatggttca
cttaacaaattgggaatatatggttggaaacaaattcgttcaggctttgt
tttttggtctctttccccaaacctctattccccatgcctcctgcaagccc
caggaaatacaaagtaacaagtacttcttcataggaaagactttggttaa
gtcatgggctcaggtgtgtctcttggaaggaacgtctcaaggctgatgct
tgggttgagccaccggtgtcagtaataggctaactgcagctatggctaag
ggcatcggactgcttttcctaggaaatctattaggaaaggtgatcctaaa
ctatttgcaataaaagtgcatgatgcaaactgtttgccctgagggatgct
ggaagaactgagataaaaaatgcctagataagcaataatgccttaaaaat
ggcgctctgctttctttttcttccctcgttaccccatttcaccttcagta
tcgctctcagtagttggaaagggttgtactttagaatctgccgagaacct
ggccaccttctaatttctaagacaaacactggataagtaaaaaggctcaa
accaaataagcctgacatccttaaactaatgagttctcaggcacaccagg
ggcggaaaaggtcagatgcccgacagagctacaggaaggccaggtgaggg
cccaattgctttttctataagctggtggtgcctaatcttaggctgcacag
cagcagcagctgatgatcttcacagactctaagcattcagggtttaactg
ggatggaataacaattgctgagcgagcaccaccagctagagttcacaggc
cctggagggtgagtgagaacgggctaggcagcgacatggagactctctgc
tgggcaaattctgagttgtcacttagatgtccaggattcggcctctcatt
gcttcacgaggaggttgtttgtcctcctccttctgagctgctggggtgac
atgccgg
ccttgactttgcttattccccttctccccctcttagactttccccttcct
aatcctttcctgttttcaaatcatacacatgaattactgtgaaaatatgt
aatagctgtctgagtctggcttatttattcttaacataatgaccttttta
gtttacctattttcctgaaatttcattctttcttatacctttgaaaagtt
ttgtgcgtgcgtgcgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgcgtgaaagacatttgtcttatatatagtttttttattttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126100730_126101837
seq2: B6Ng01-164N04.b_48_1154

seq1  GAATTCCACGTCTAAGGCTCTTCAGGAGCACACATTCAGCAGTGGATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGTCTAAGGCTCTTCAGGAGCACACATTCAGCAGTGGATGTT  50

seq1  ACACATCCAGCTCCAGCATGCCTGAAGGCATCCACAACAGTATCTTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCAGCTCCAGCATGCCTGAAGGCATCCACAACAGTATCTTCCAC  100

seq1  AGAGGTGTAAGAGAGAAACCCAGGGATTGCAAATAGCTCCATATGGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGTAAGAGAGAAACCCAGGGATTGCAAATAGCTCCATATGGTTCA  150

seq1  CTTAACAAATTGGGAATATATGGTTGGAAACAAATTCGTTCAGGCTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAAATTGGGAATATATGGTTGGAAACAAATTCGTTCAGGCTTTGT  200

seq1  TTTTTGGTCTCTTTCCCCAAACCTCTATTCCCCATGCCTCCTGCAAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTCTCTTTCCCCAAACCTCTATTCCCCATGCCTCCTGCAAGCCC  250

seq1  CAGGAAATACAAAGTAACAAGTACTTCTTCATAGGAAAGACTTTGGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATACAAAGTAACAAGTACTTCTTCATAGGAAAGACTTTGGTTAA  300

seq1  GTCATGGGCTCAGGTGTGTCTCTTGGAAGGAACGTCTCAAGGCTGATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGGCTCAGGTGTGTCTCTTGGAAGGAACGTCTCAAGGCTGATGCT  350

seq1  TGGGTTGAGCCACCGGTGTCAGTAATAGGCTAACTTCAGCTATGGCTAAG  400
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGTTGAGCCACCGGTGTCAGTAATAGGCTAACTGCAGCTATGGCTAAG  400

seq1  GGCATCGGACTGCTTTTCCTAGGAAATCTATTAGGAAAGGTGATCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCGGACTGCTTTTCCTAGGAAATCTATTAGGAAAGGTGATCCTAAA  450

seq1  CTATTTGCAATAAAAGTGCATGATGCAAACTGTTTGCCCTGAGGGATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCAATAAAAGTGCATGATGCAAACTGTTTGCCCTGAGGGATGCT  500

seq1  GGAAGAACTGAGATAAAAAATGCCTAGATAAGCAATAATGCCTTAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACTGAGATAAAAAATGCCTAGATAAGCAATAATGCCTTAAAAAT  550

seq1  GGCGCTCTGCTTTCTTTTTCTTCCCTCGTTACCCCATTTCACCTTCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTCTGCTTTCTTTTTCTTCCCTCGTTACCCCATTTCACCTTCAGTA  600

seq1  TCGCTCTCAGTAGTTGGAAAGGGTTGTACTTTAGAATCTGCCGAGAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCTCAGTAGTTGGAAAGGGTTGTACTTTAGAATCTGCCGAGAACCT  650

seq1  GGCCACCTTCTAATTTCTAAGACAAACACTGGATAAGTAAAAAGGCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCTTCTAATTTCTAAGACAAACACTGGATAAGTAAAAAGGCTCAA  700

seq1  ACCAAATAAGCCTGACATCCTTAAACTAATGAGTTCTCAGGCACACCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAAGCCTGACATCCTTAAACTAATGAGTTCTCAGGCACACCAGG  750

seq1  GGCGGAAAAGGTCAGATGCCCGACAGAGCTACAGGAAGGCCAGGTGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGAAAAGGTCAGATGCCCGACAGAGCTACAGGAAGGCCAGGTGAGGG  800

seq1  CCCAATTGCTTTTTTCTATAAGCTGGTGGTGCCTAA-CCTAGGCTGCACA  849
      ||||||||| |||||||||||||||||||||||||| | |||||||||||
seq2  CCCAATTGC-TTTTTCTATAAGCTGGTGGTGCCTAATCTTAGGCTGCACA  849

seq1  GCAGCAGCAGCTGATGATCTTCACAGACTCTAAGCATCCA-GGTTTAACT  898
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  GCAGCAGCAGCTGATGATCTTCACAGACTCTAAGCATTCAGGGTTTAACT  899

seq1  -GGATGGAATAACAA-TGCTGAGCGAGCACCACCAGCTAGAGTTCACAGG  946
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGATGGAATAACAATTGCTGAGCGAGCACCACCAGCTAGAGTTCACAGG  949

seq1  CCCTGGAGGGTGAGGTGAGAACGGGCTAGGCAGCGACATGGAGACTCTCT  996
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGGGTGA-GTGAGAACGGGCTAGGCAGCGACATGGAGACTCTCT  998

seq1  GCTGGGCAAAATCCTTGAAGATGTCAC-TAGATGTCCAAGATTCGG-CTC  1044
      |||||||||| ||  || || |||||| |||||||||| ||||||| |||
seq2  GCTGGGCAAATTC--TG-AGTTGTCACTTAGATGTCCAGGATTCGGCCTC  1045

seq1  TCACTGCCTTCACCGAGGAGGGTTGTTGTCCTCCCTCCTCTGAAGCTGCT  1094
      ||| || ||||| |||||||| |  |||||||||  | |||| |||||||
seq2  TCATTG-CTTCA-CGAGGAGGTTGTTTGTCCTCCTCCTTCTG-AGCTGCT  1092

seq1  -GGGTGACATGCCGG  1108
       ||||||||||||||
seq2  GGGGTGACATGCCGG  1107