BAC Information

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BAC

Clone NameB6Ng01-165A13
Chromosome6 (Build37)
Map Location 33,284,351 - 33,285,402
singlet/doubletsinglet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165A13.bB6Ng01-165A13.g
ACCDH957200DH957201
length1,2071,041
definitionDH957200|Mus musculus domesticus DNA, BAC clone: B6Ng01-165A13, 5' end.DH957201|Mus musculus domesticus DNA, BAC clone: B6Ng01-165A13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaagaatactgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccaccttacaccagtcagaatggctaagataaaaaattcaggtaacagc
agatgctggtgaggatgtggagaaagaggaacattcctccattgttggta
ggattgcaagtttgtacaaccactctggaaatcagtctggcagttcctca
gaaaatttgacatagtacttcccgaggatcccgcaatacctctcctgggc
atttatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagcgttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacagacaatgtggtacatttacacaatg
gagtactactcagctatgaaaaagaatgaatttatgaaattcctaggtaa
atggatggacctggagcatatcatcccaagtgagggaacacaatcacaaa
agaactcacatgatatgtactcactgataagtggatattagaccagaaac
ttagaatacccaagatacaagatacaaattgcaaaacacatgaaactcaa
gaagtctatgtctttttattggggaattgagtcaattgatgttaagagaa
attaaagaaaagtaattgttgcttcctgtcatttttgttgttaatgttgc
gatgctgttcttgcggctctctttttttagttttgttgaaggattacttt
cttgcttctagggtgtagtttccatccttgtgttggtgttttccttttat
tatcctttgaagggctggattcgtggaaagatattgtgtgaatttggttt
tgtcatggaatactttggtttctccatctatggtaattgagagtattgct
ggttatagtagcctggctggtatttctgttctcttaggtctgtataacat
cttgtccaggattttctggctttcctagtctcctggttgagaagtctggg
agtaatttctgaaataggcctgcttatatagggtactgaactttttccta
ctgctttaatatctgtcctaattaaggcaattgtggtcggatataatagg
cggtgagaattccttctcggtcaagccatcaaggaatcataagcttcctt
gagtagt
gaattcaacagccttattcaatctccatttccagcaaaataccacacaac
attaactctctttgcataagacaaatggaaagaggctgcaatgcatcaca
gccacaatgtatttaacaagatggagatgaacaatgaaacttctagggaa
acttacaacactgatgccttgcatttgcataaaaatgtcttagagtaagt
tatttctttagggtggggccagagaatgcgcacgcacgttgggaaaggat
ggagactgtgcttacgggaagcaggttcttgtatcacctgctatagcagc
ctggagggataaaagaacactgatggtggcactaataatgtcactgtgct
ttaactccctcttaaacagatattactaatatctcagacacagagaaacc
aggaatgcctcaaggagtaatttgataataccctttttaaagttccaagc
ctctggaagcaacaatgctagtcatctctgaatgactgtggttaactcag
gggaattaattcttgaggaataccagaggtcggctcagaattgtcattca
tttggaatctgggtccaagaatttagtgtttgatccagtaatatggttta
ccccaaattactgttttctctgtaatattttatttcataataaacagttt
tggccaaaaaaaaaaaaatgcagactttagcttttataaaatgggattat
gtcaaagaggaaaagaaaaaaacaaatgccaaaacatgaaccatttgttt
gcttaatagcccatgtaccgtgcctaccaaaccaaaaaaagaaagaaatg
aaaagaaaaatctttaaatactaaataaataagtaaacaaacacataaag
gaggagaaataaacaaagaaagaagagaagaaggagggaggaaaagtccc
tctactgctgactccttccttcagaagctatttagaattttctatgcagg
agctggctttctgcttctactgatgtaatctgcattcgtgattctggaac
agctgaggcaatacaagaaggagaggtccaatccttatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33284351_33285402
seq2: B6Ng01-165A13.g_70_1110 (reverse)

seq1  TTCATAGGATTTTGACCTCTTCCTCTTGTATTGCCTCAGCTGTTTCCAGA  50
      |||||| |  || ||||||| | ||||||||||||||||||| |||||||
seq2  TTCATAAGGATTGGACCTCTCCTTCTTGTATTGCCTCAGCTG-TTCCAGA  49

seq1  ATTCACGAATGCAGATTACATCAGTAGAAGCAGAAAGCCAGCTCCTTGCC  100
      | ||||||||||||||||||||||||||||||||||||||||||||   |
seq2  A-TCACGAATGCAGATTACATCAGTAGAAGCAGAAAGCCAGCTCCT--GC  96

seq1  TTAGAAAATTCTAAATAGCTTTCTGGAAGGAAGGAGTCAGCAGTAGAGGG  150
       |||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  ATAGAAAATTCTAAATAGC-TTCT-GAAGGAAGGAGTCAGCAGTAGAGGG  144

seq1  ACTTTTTCCTTCCTTCCTTTCTTCTCCTTCTTTCTTTGTTTATTTCTCCT  200
      || ||||||| |||  | ||||||| ||||||||||||||||||||||||
seq2  AC-TTTTCCTCCCT--CCTTCTTCT-CTTCTTTCTTTGTTTATTTCTCCT  190

seq1  CCTTTATGTGTTTGTTTACTTATTTATTTAGTATTTTAAAGATTTTTCTT  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTTTATGTGTTTGTTTACTTATTTATTTAGTA-TTTAAAGATTTTTCTT  239

seq1  TTCATTTCTTTCTTTTTTTGGTTTGGTAGGCACGGTACATGGGCTATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTTTCTTTTTTTGGTTTGGTAGGCACGGTACATGGGCTATTAA  289

seq1  GCAAACAAATGGTTCATGTTTTGGCATTTGTTTTTTTCTTTTCCTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAATGGTTCATGTTTTGGCATTTGTTTTTTTCTTTTCCTCTTTG  339

seq1  ACATAATCCCATTTTATAAAAGCTAAAGTCTGCATTTTTTTTTTTTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATCCCATTTTATAAAAGCTAAAGTCTGCATTTTTTTTTTTTTGGC  389

seq1  CAAAACTGTTTATTATGAAATAAAATATTACAGAGAAAACAGTAATTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGTTTATTATGAAATAAAATATTACAGAGAAAACAGTAATTTGG  439

seq1  GGTAAACCATATTACTGGATCAAACACTAAATTCTTGGACCCAGATTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACCATATTACTGGATCAAACACTAAATTCTTGGACCCAGATTCCA  489

seq1  AATGAATGACAATTCTGAGCCGACCTCTGGTATTCCTCAAGAATTAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGACAATTCTGAGCCGACCTCTGGTATTCCTCAAGAATTAATTC  539

seq1  CCCTGAGTTAACCACAGTCATTCAGAGATGACTAGCATTGTTGCTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTTAACCACAGTCATTCAGAGATGACTAGCATTGTTGCTTCCAG  589

seq1  AGGCTTGGAACTTTAAAAAGGGTATTATCAAATTACTCCTTGAGGCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGAACTTTAAAAAGGGTATTATCAAATTACTCCTTGAGGCATTC  639

seq1  CTGGTTTCTCTGTGTCTGAGATATTAGTAATATCTGTTTAAGAGGGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCTCTGTGTCTGAGATATTAGTAATATCTGTTTAAGAGGGAGTT  689

seq1  AAAGCACAGTGACATTATTAGTGCCACCATCAGTGTTCTTTTATCCCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGTGACATTATTAGTGCCACCATCAGTGTTCTTTTATCCCTCC  739

seq1  AGGCTGCTATAGCAGGTGATACAAGAACCTGCTTCCCGTAAGCACAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTATAGCAGGTGATACAAGAACCTGCTTCCCGTAAGCACAGTCT  789

seq1  CCATCCTTTCCCAACGTGCGTGCGCATTCTCTGGCCCCACCCTAAAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTTCCCAACGTGCGTGCGCATTCTCTGGCCCCACCCTAAAGAAA  839

seq1  TAACTTACTCTAAGACATTTTTATGCAAATGCAAGGCATCAGTGTTGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACTCTAAGACATTTTTATGCAAATGCAAGGCATCAGTGTTGTAA  889

seq1  GTTTCCCTAGAAGTTTCATTGTTCATCTCCATCTTGTTAAATACATTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTAGAAGTTTCATTGTTCATCTCCATCTTGTTAAATACATTGTG  939

seq1  GCTGTGATGCATTGCAGCCTCTTTCCATTTGTCTTATGCAAAGAGAGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATGCATTGCAGCCTCTTTCCATTTGTCTTATGCAAAGAGAGTTA  989

seq1  ATGTTGTGTGGTATTTTGCTGGAAATGGAGATTGAATAAGGCTGTTGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGTGGTATTTTGCTGGAAATGGAGATTGAATAAGGCTGTTGAAT  1039

seq1  TC  1052
      ||
seq2  TC  1041