BAC Information

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BAC

Clone NameB6Ng01-165N09
Chromosome6 (Build37)
Map Location 4,774,045 - 4,932,034
singlet/doubletdoublet
Overlap geneLOC100040018, Ppp1r9a
Upstream geneLOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2, Casd1, Sgce, Peg10
Downstream genePon1, Pon3, Pon2, Asb4, Pdk4, Dync1i1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165N09.bB6Ng01-165N09.g
ACCDH957784DH957785
length1,1411,150
definitionDH957784|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N09, 5' end.DH957785|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,930,894 - 4,932,034)(4,774,045 - 4,775,195)
sequence
gaattccaaaaaggccctgtgatgatctctcagggctctaaatttacaag
gcaggaaagaatgaaatacaaactctggaagcttattctaaagtctaaat
aaatgaaaataaatgacattaaaagtgcactcggtggagagaactcatgg
aaagccataaaacgcacaggaagcaaagacaagtgaaactcttttatatg
acacagctgaacctacaatttctcaaaaacaaaacaaaatatttgaaata
ttttcatttgtctatgtcttaagactcaatttgaagtagtcaaatgagtt
cggatcatatccagccaagaagccatccttaccatcatacctgtcccctg
catgctggttctaaatctctactgtcaacataactggattctgtcattat
gactggattcagagtcacctaagaaaccacatctgagcatattcgtgaag
cctttccagagaaggttaaccaacggggaaagccccatcctagtgtggag
agagtaccttcccattaggatgaggttttgggttaaaattataaaaagat
ggtaagaggaggcaccagctaagcatcaatctctgtctctgcttcctgac
tccaaacaaaatgcaaccagcagacgcatgttcatgccgtcacagctaga
gcctctctctgccactccttccccaggatggaccatctacccaattagtg
atccacaacaagcccttccttccctctgccttctgctgcttctatcagta
tctcgacaatccacctcgcaaagtggctagtgcatcttttataatccatt
ctctacccccagagctacacaaaactgtccagctttatgccactgaagaa
ttctttagattttctagagctatgcctaagtagtatgttcaacacacgtt
cctttgtggggagtttcatttaaatgcatttgggattgatggatgaggct
tacttctttttgttgtgagattggaccaccgatagataggaacactgcta
tcacctcccttcatgatgaccttggggtttttccaggttttgactactac
aaataaaggatgtgtgtgaatattaccatctatgtgggtacactctcttg
ttccctccttatgtcccacacaggaatggaattgccttgga
gaattcaagtaatttgtagagtgtttgggagagtgttttacagctgtctg
tagccaggagaagaaagcatctgcctcctctcctctaatctggacccgat
ttgcttctgagaaatagagagcagaaaggaagagagcaggaaggctgagc
aatggataaacctagctcgatgagcgagcgctgcatcagtgagggactga
ggccaacatccacagagttgagccatattaacctcatggccactggatga
taacaacttcttactccgcaatcttccttccaaaaccccataatcccact
gtagccactgggaaactgccaggcaaatgccacgaaggtccattccacag
agcacacgacaggtgtccttggacagtattcaaggtcacccaaaccaagg
taatcctgacaaatctcaacagccaaccgaagagacatatggctaccaaa
caactaaataatttgctgtcctggctgacatcttatatcagtaaaaggac
atcggacaaagcaagaaaatttgaattgtgtgtggcattcagctaatgct
catcaccactagtcagccattatttgtcataaatgtgtcaaacaaaagta
ggaatccacttgagagactgaatgtcagatgcaagagaacgctactgcat
ctcaacttttcaggtctatagctgtttgtaaaaggtggggatttttgttg
agtgatttaaaagtataaacaacaaaggtggcttgcttggcattgtgtat
atgcactatcacaaatttaaggacaacctagccatatgcctttttacttc
ttattattctctttttaatatataaaggtgactgtattcatctgatacat
gattctaagtttcttactttcggcttccagggaagaatgtccacatgtgc
ctctcaaaatgttctcttggaacctcttgtgcaatatttttatataaatt
ctttggggaagcaatacattcaagttggtgctttcaatttattgagtgca
agacctcatgtctcttttgtatacctcaagtctacacctttataattgaa
ctgcaagtctcatatatttttatgttttctcagagaacggatatccggta
ttaagcagaacaggacaactacttggaacaccaattgtcagatcttgagg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4930894_4932034
seq2: B6Ng01-165N09.b_46_1186 (reverse)

seq1  TCCAAGGCATATTCCATTCCTGGTTGTGGACATAA-GAGGG-ACA--AGA  46
      ||||||||| ||||||||||||  || |||||||| ||||| |||  |||
seq2  TCCAAGGCA-ATTCCATTCCTGTGTG-GGACATAAGGAGGGAACAAGAGA  48

seq1  GTGTACCCACATAGAT-GTGATATTCACACACATCTTTTATTTGTAGTAG  95
      |||||||||||||||| || ||||||||||||||| ||||||||||||||
seq2  GTGTACCCACATAGATGGTAATATTCACACACATCCTTTATTTGTAGTAG  98

seq1  TCAAAA-CTGGAAACAACCCAAGTGTCATCATGAAGGGAGTGGATAGCAG  144
      |||||| ||||||| | |||||| ||||||||||||||||  ||||||||
seq2  TCAAAACCTGGAAAAACCCCAAG-GTCATCATGAAGGGAGGTGATAGCAG  147

seq1  TGTT-CTATCTATTCGGTGGTCCAATTCTCAACAACAAAAAGAAGTAAGC  193
      |||| ||||||| |||||||||||| |||| |||||||||||||||||||
seq2  TGTTCCTATCTA-TCGGTGGTCCAA-TCTC-ACAACAAAAAGAAGTAAGC  194

seq1  CTCATCCATCAATCCCAAATTGCATTTAAATGAAACTCCCCACAAAGGAA  243
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCATCCATCAATCCCAAA-TGCATTTAAATGAAACTCCCCACAAAGGAA  243

seq1  CGTGTGTTGAACATACTACTTAGGCATAGCTCTAGAAAATCTAAAGAATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTTGAACATACTACTTAGGCATAGCTCTAGAAAATCTAAAGAATT  293

seq1  CTTCAGTGGCATAAAGCTGGACAGTTTTGTGTAGCTCTGGGGGTAGAGAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGGCATAAAGCTGGACAGTTTTGTGTAGCTCTGGGGGTAGAGAA  343

seq1  TGGATTATAAAAGATGCACTAGCCACTTTGCGAGGTGGATTGTCGAGATA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATAAAAGATGCACTAGCCACTTTGCGAGGTGGATTGTCGAGATA  393

seq1  CTGATAGAAGCAGCAGAAGGCAGAGGGAAGGAAGGGCTTGTTGTGGATCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAAGCAGCAGAAGGCAGAGGGAAGGAAGGGCTTGTTGTGGATCA  443

seq1  CTAATTGGGTAGATGGTCCATCCTGGGGAAGGAGTGGCAGAGAGAGGCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGGGTAGATGGTCCATCCTGGGGAAGGAGTGGCAGAGAGAGGCTC  493

seq1  TAGCTGTGACGGCATGAACATGCGTCTGCTGGTTGCATTTTGTTTGGAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGACGGCATGAACATGCGTCTGCTGGTTGCATTTTGTTTGGAGT  543

seq1  CAGGAAGCAGAGACAGAGATTGATGCTTAGCTGGTGCCTCCTCTTACCAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCAGAGACAGAGATTGATGCTTAGCTGGTGCCTCCTCTTACCAT  593

seq1  CTTTTTATAATTTTAACCCAAAACCTCATCCTAATGGGAAGGTACTCTCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATAATTTTAACCCAAAACCTCATCCTAATGGGAAGGTACTCTCT  643

seq1  CCACACTAGGATGGGGCTTTCCCCGTTGGTTAACCTTCTCTGGAAAGGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTAGGATGGGGCTTTCCCCGTTGGTTAACCTTCTCTGGAAAGGCT  693

seq1  TCACGAATATGCTCAGATGTGGTTTCTTAGGTGACTCTGAATCCAGTCAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAATATGCTCAGATGTGGTTTCTTAGGTGACTCTGAATCCAGTCAT  743

seq1  AATGACAGAATCCAGTTATGTTGACAGTAGAGATTTAGAACCAGCATGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGAATCCAGTTATGTTGACAGTAGAGATTTAGAACCAGCATGCA  793

seq1  GGGGACAGGTATGATGGTAAGGATGGCTTCTTGGCTGGATATGATCCGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGGTATGATGGTAAGGATGGCTTCTTGGCTGGATATGATCCGAA  843

seq1  CTCATTTGACTACTTCAAATTGAGTCTTAAGACATAGACAAATGAAAATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGACTACTTCAAATTGAGTCTTAAGACATAGACAAATGAAAATA  893

seq1  TTTCAAATATTTTGTTTTGTTTTTGAGAAATTGTAGGTTCAGCTGTGTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATATTTTGTTTTGTTTTTGAGAAATTGTAGGTTCAGCTGTGTCA  943

seq1  TATAAAAGAGTTTCACTTGTCTTTGCTTCCTGTGCGTTTTATGGCTTTCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGAGTTTCACTTGTCTTTGCTTCCTGTGCGTTTTATGGCTTTCC  993

seq1  ATGAGTTCTCTCCACCGAGTGCACTTTTAATGTCATTTATTTTCATTTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCTCTCCACCGAGTGCACTTTTAATGTCATTTATTTTCATTTAT  1043

seq1  TTAGACTTTAGAATAAGCTTCCAGAGTTTGTATTTCATTCTTTCCTGCCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTTAGAATAAGCTTCCAGAGTTTGTATTTCATTCTTTCCTGCCT  1093

seq1  TGTAAATTTAGAGCCCTGAGAGATCATCACAGGGCCTTTTTGGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTTAGAGCCCTGAGAGATCATCACAGGGCCTTTTTGGAATTC  1141

seq1: chr6_4774045_4775195
seq2: B6Ng01-165N09.g_68_1217

seq1  GAATTCAAGTAATTTGTAGAGTGTTTGGGAGAGTGTTTTACAGCTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAATTTGTAGAGTGTTTGGGAGAGTGTTTTACAGCTGTCTG  50

seq1  TAGCCAGGAGAAGAAAGCATCTGCCTCCTCTCCTCTAATCTGGACCCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGAGAAGAAAGCATCTGCCTCCTCTCCTCTAATCTGGACCCGAT  100

seq1  TTGCTTCTGAGAAATAGAGAGCAGAAAGGAAGAGAGCAGGAAGGCTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTGAGAAATAGAGAGCAGAAAGGAAGAGAGCAGGAAGGCTGAGC  150

seq1  AATGGATAAACCTAGCTCGATGAGCGAGCGCTGCATCAGTGAGGGACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAAACCTAGCTCGATGAGCGAGCGCTGCATCAGTGAGGGACTGA  200

seq1  GGCCAACATCCACAGAGTTGAGCCATATTAACCTCATGGCCACTGGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACATCCACAGAGTTGAGCCATATTAACCTCATGGCCACTGGATGA  250

seq1  TAACAACTTCTTACTCCGCAATCTTCCTTCCAAAACCCCATAATCCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTTCTTACTCCGCAATCTTCCTTCCAAAACCCCATAATCCCACT  300

seq1  GTAGCCACTGGGAAACTGCCAGGCAAATGCCACGAAGGTCCATTCCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCACTGGGAAACTGCCAGGCAAATGCCACGAAGGTCCATTCCACAG  350

seq1  AGCACACGACAGGTGTCCTTGGACAGTATTCAAGGTCACCCAAACCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACGACAGGTGTCCTTGGACAGTATTCAAGGTCACCCAAACCAAGG  400

seq1  TAATCCTGACAAATCTCAACAGCCAACCGAAGAGACATATGGCTACCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGACAAATCTCAACAGCCAACCGAAGAGACATATGGCTACCAAA  450

seq1  CAACTAAATAATTTGCTGTCCTGGCTGACATCTTATATCAGTAAAAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAATAATTTGCTGTCCTGGCTGACATCTTATATCAGTAAAAGGAC  500

seq1  ATCGGACAAAGCAAGAAAATTTGAATTGTGTGTGGCATTCAGCTAATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGACAAAGCAAGAAAATTTGAATTGTGTGTGGCATTCAGCTAATGCT  550

seq1  CATCACCACTAGTCAGCCATTATTTGTCATAAATGTGTCAAACAAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCACTAGTCAGCCATTATTTGTCATAAATGTGTCAAACAAAAGTA  600

seq1  GGAATCCACTTGAGAGACTGAATGTCAGATGCAAGAGAACGCTACTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCACTTGAGAGACTGAATGTCAGATGCAAGAGAACGCTACTGCAT  650

seq1  CTCAACTTTTCAGGTCTATAGCTGTTTGTAAAAGGTGGGGATTTTTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTTTCAGGTCTATAGCTGTTTGTAAAAGGTGGGGATTTTTGTTG  700

seq1  AGTGATTTAAAAGTATAAACAACAAAGGTGGCTTGCTTGGCATTGTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTAAAAGTATAAACAACAAAGGTGGCTTGCTTGGCATTGTGTAT  750

seq1  ATGCACTATCACAAATTTAAGGACAACCTAGCCATATGCCATTTTTACTT  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGCACTATCACAAATTTAAGGACAACCTAGCCATATGCC-TTTTTACTT  799

seq1  CTTTATTATTCTCTTTTTAATATATAAAGGTGACTGTATTCATCTGATAA  850
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  C-TTATTATTCTCTTTTTAATATATAAAGGTGACTGTATTCATCTGAT-A  847

seq1  CATGATTCTAAGTTTCTTACTTTCGGTCTTCCAGGGAAGAATGTCCACAT  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATGATTCTAAGTTTCTTACTTTCGG-CTTCCAGGGAAGAATGTCCACAT  896

seq1  GTGCCTCTCAAAATGTTCTCCTGGAACCTCTTGTTGCAATATTTTTAATA  950
      |||||||||||||||||||| |||||||||||| |||||||||||| |||
seq2  GTGCCTCTCAAAATGTTCTCTTGGAACCTCTTG-TGCAATATTTTT-ATA  944

seq1  TAAATTCTTTGGGGAAGCAATACATTCCAGGTTGTGCTTTCAATTTATTG  1000
      ||||||||||||||||||||||||||| || | |||||||||||||||||
seq2  TAAATTCTTTGGGGAAGCAATACATTCAAGTTGGTGCTTTCAATTTATTG  994

seq1  AGTGCAAGACCTCATGTCTTCTTTTGTATA-CTCAAGTCTACAACCTTAT  1049
      |||||||||||||||||| ||||||||||| |||||||||||| | ||||
seq2  AGTGCAAGACCTCATGTC-TCTTTTGTATACCTCAAGTCTACACCTTTAT  1043

seq1  ATTTGAACTGCAAGTCTCATATA-TTTTATGTTTTCTCAGA-AAGGGAAA  1097
      | ||||||||||||||||||||| ||||||||||||||||| || ||| |
seq2  AATTGAACTGCAAGTCTCATATATTTTTATGTTTTCTCAGAGAACGGATA  1093

seq1  TCAGATTATAAGCAGAACAGGACAACTACAT-GAACACC-ATTG-CAGAT  1144
      || | |  ||||||||||||||||||||| | ||||||| |||| |||||
seq2  TCCGGTATTAAGCAGAACAGGACAACTACTTGGAACACCAATTGTCAGAT  1143

seq1  CTTGAGG  1151
      |||||||
seq2  CTTGAGG  1150