BAC Information

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BAC

Clone NameB6Ng01-166O20
Chromosome6 (Build37)X (Build37)
Map Location 56,261,691 - 56,262,326125,720,273 - 125,720,328
singlet/doubletsingletsinglet
Overlap genePde1c
Upstream geneAqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166O20.bB6Ng01-166O20.g
ACCDH958564DH958565
length1,084825
definitionDH958564|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O20, 5' end.DH958565|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,261,691 - 56,262,326)(125,720,273 - 125,720,328)
sequence
gaattctccgttcctaaaaaccaccaacaaaggaaagcttctgcaaatgt
agaaggccagactgtcccccaaccgagcaaccaaacttggtggcattgtc
caggagctactgcttttatcctttaatgaggaggatacaattaagagtca
ctgaggccttgagagaccaatgtgtaaagttgtgtaagtgaagcctgatt
atgttggagaccccaaaatattggacatgctagttgtatacgacattttc
tagcctacgagaaaaaagtaggttgcaggcagcaaagctgggagagtgaa
gccatctatgccctttgacatcagacttggaactagagcatttgtacttt
gacctgttgggtttccgtcttgctttggtccagtattttctcactatgtc
tctattcctcccttttagaagtgccattgcatgttagaagtatggaattt
gctttttaattttacaggaagcacaattaagtgattgccttgagtctcag
aagagactttggaattttaaactgtgttgatgctgtggaagactggatag
actgttgaagttggactaaatgtattttacattatgatactgacatgagt
ctatgagggctagggagtaggtgtgatggtttgaaggatgcttcctgtag
gctcatgtatttgaatatttggtgctagttggtggaactgtttgagaaag
atgaagaagtatagccttgttgaaggaggtgtgtcactgcggttgatctg
tgaagtttcaaaacattcatatgattctcagtgttctttttgtgtcttat
ggttgtggatcaagatgtgagcactcacaattctttctctctgtcataga
cctccagaaactgtaagccatattatgcattttcttttataaattacctt
ggttgctgcatgttatcacagcagtataaatgtaatcatgatagatttga
ttatattcaagcacatacagaagaacaaaactagtgaatataaaattctg
aatgccataaacacaattaactctactgaagatccatgggagcaattgga
tggcaaggtgttaaggagttgggggtggggggag
gaattctggggacttttcagagggtatataaatgctaggtccccaagagg
tagtgggggttgttgcttggttgttgttggtcatagtttgacaagtagtc
atgagcaaagaagaaacaacaagaagaaattagatatcctgttggtaaag
accaagcttgccccaaggaacgtgacacccttaatcagcaggaagtagtc
aaaggataacatctagcccctgactttagtcaggggtctctttctttttc
tgtctcttttgctctcttgcctagtgttagggggttgaaagagtgggtga
aaagacgtagataatggtgcaagaaagaagaacccacaaagtagctaaag
gccagctacaaggaattggcaaatgggatcaagtgaagttaaaatgattt
tataaagaagaaaaaaaacctgccatgaaaaatatttgtccactaaatgt
cagacagtgggttaatatataaaatacacaaagaactgcctaaattaaat
accaggaaaacatcccagatgtccctcaaacagaggaatgactagagaaa
atgtacatttacacaatggagtactactcagctattaaaagcaatgactt
catgaaagtcttaggcaaatggatggaactagaaaatatcatcctgagtg
aggtaacccagtcacaaaagaatacacaaggtatgtactcactgatacat
ggatattaagaaaaaagcttggaatacccacgatacaactcacagaccat
aaaaagctcaagaagaagaaagaccaaagtgtggatgcttcagtcctact
tagaagggggaacaaaataatcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56261691_56262326
seq2: B6Ng01-166O20.b_490_1130

seq1  GGAATTTGCTTTTTAATTTTACAGGAAGCACAATTAAGTGATTGCCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGCTTTTTAATTTTACAGGAAGCACAATTAAGTGATTGCCTTGA  50

seq1  GTCTCAGAAGAGACTTTGGAATTTTAAACTGTGTTGATGCTGTGGAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAAGAGACTTTGGAATTTTAAACTGTGTTGATGCTGTGGAAGAC  100

seq1  TGGATAGACTGTTGAAGTTGGACTAAATGTATTTTACATTATGATACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGACTGTTGAAGTTGGACTAAATGTATTTTACATTATGATACTGA  150

seq1  CATGAGTCTATGAGGGCTAGGGAGTAGGTGTGATGGTTTGAAGGATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTCTATGAGGGCTAGGGAGTAGGTGTGATGGTTTGAAGGATGCTT  200

seq1  CCTGTAGGCTCATGTATTTGAATATTTGGTGCTAGTTGGTGGAACTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGGCTCATGTATTTGAATATTTGGTGCTAGTTGGTGGAACTGTTT  250

seq1  GAGAAAGATGAAGAAGTATAGCCTTGTTGAAGGAGGTGTGTCACTGCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGATGAAGAAGTATAGCCTTGTTGAAGGAGGTGTGTCACTGCGGT  300

seq1  TGATCTGTGAAGTTTCAAAACATTCATATGATTCTCAGTGTTCTTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTGAAGTTTCAAAACATTCATATGATTCTCAGTGTTCTTTTTGT  350

seq1  GTCTTATGGTTGTGGATCAAGATGTGAGCACTCACAATTCTTTCTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGGTTGTGGATCAAGATGTGAGCACTCACAATTCTTTCTCTCTG  400

seq1  TCATAGACCTCCAGAAACTGTAAGCCATATTATGCATTTTCTTTTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGACCTCCAGAAACTGTAAGCCATATTATGCATTTTCTTTTATAAA  450

seq1  TTACCTTGGTTGCTGCATGTTATCACAGCAGTATAAATGTAATCATGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTGGTTGCTGCATGTTATCACAGCAGTATAAATGTAATCATGATA  500

seq1  GATTTGATTATATTCAAGCACATACAGAAGAACAAAACTAGTGAATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGATTATATTCAAGCACATACAGAAGAACAAAACTAGTGAATATAA  550

seq1  AATTCTGAATGCCATAAACAACAATTAACTCTACTG-AGATCCAT-GGAG  598
      ||||||||||||||||||| |||||||||||||||| |||||||| ||||
seq2  AATTCTGAATGCCATAAAC-ACAATTAACTCTACTGAAGATCCATGGGAG  599

seq1  CAATTGGATGGC-AGGTGTT-AGGAGTT--GGGTGGGGGCAG  636
      |||||||||||| ||||||| |||||||  ||||||||| ||
seq2  CAATTGGATGGCAAGGTGTTAAGGAGTTGGGGGTGGGGGGAG  641

seq1: chrX_125720273_125720328
seq2: B6Ng01-166O20.g_836_891

seq1  AAGACCAAAGTGTGGATGTTTCAGTCCTTCTTAGAAAGGGAAACAAAATA  50
      |||||||||||||||||| ||||||||| ||||||| ||| |||||||||
seq2  AAGACCAAAGTGTGGATGCTTCAGTCCTACTTAGAAGGGGGAACAAAATA  50

seq1  CTCATG  56
       |||||
seq2  ATCATG  56