BAC Information

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BAC

Clone NameB6Ng01-167A12
Chromosome6 (Build37)
Map Location 32,446,320 - 32,569,183
singlet/doubletdoublet
Overlap genePlxna4
Upstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167A12.bB6Ng01-167A12.g
ACCDH958638DH958639
length1,1291,179
definitionDH958638|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A12, 5' end.DH958639|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,568,031 - 32,569,183)(32,446,320 - 32,447,510)
sequence
gaattcataataaagtccaaaagtgatcattggggacaaccaaggatgct
tcctgacacaaggaatctaggtactatttatcttgctctgctgtcataga
gaagaacgttactccaaatgttactttctggtctatagccactggagctc
tgtccattatatacataccacacaaagcaggacacagaaagggaagaaga
catccctcctgccttcacacttttaagttgacttgccattatcattggta
tatccttgaccaaatgttaattgctttattttgtacattaagccaaaatg
agagacttattagtaaggggacagaaaagaatgcgagaatcagtttttta
aaactatactatctgtaggggttggttctgatgcatggtcctgattccca
attggttcttgttttgtcagtaaagaaagccatggatcaattgcttgaca
gacggtataggtggtacttctgggtccctgttagaaaagaagctgcaagg
acagagaacagagattgccatgctttggagagaagaaaattgggcaacca
tgtgagatctcaaaatggagtggccacacaggccactcttataggtgggt
gatcagggaagattagcaactgaagtttagaacaagtgggtaagacttag
ataagatattaataagggcatgcttttccaggtggtagattgtagcacct
atcaattgtgccaagaaggcaagtgaaattgaacaactgtgtgtctgtgt
cttttatctgctgattcaaagaaaactggaggaggactggtagtgtggtc
tcttcccagagctaaaggtgggtagagtataaaattacatgcaacagcta
tcaacaacgaattattagaagtgtctgaagatatatttttgttttgttct
ctgattcaaatatttctagataattcccggaggctccttatagagcaaag
gatatatctatttgtatttaaattgtggtaatatctaagcattacttggt
ctctcattgtatgtacatagttggataaatggatagatagtctgtcaatc
taggtgttacccttcatccctttattcatgatattgatttaaaaaccctt
ctgtatctacattgtgctatttcggacat
gaattccagatggatgcaccggcccataagggctggaacaagaggaacag
gcacagccctcccccagtccaccttctccagccacctcgacttaatagag
cccttgcctaagggcacaaggccaagtagaatagactacaccatttggat
ccacctagcatggctgggctaacaattctcacgtgcatgccagctctagg
gaagggtaaatcaatccactcatgcagcctgattcgcacaacagcctaca
actgaaggcagagaaaggacatgcaactgtcatcacctccacaacagcgt
atctcctcagctcgagccaggcccatgacagtgaaataccgtgggggact
gactgtctccacaataactaaaacagtggcatctcactcctaccttcttc
agcttgccacttttggtgcccacgaaggccagtgagtggttcttgtagac
ataggcgatgacagaagtcatgcggtccctgtcttctgtgaagactggaa
tgccacgcaccatttcggaaactcccagaggagcattcatatccaggcca
cagaagttgtcatcaatagtaaggagctgaaaagtaaatgagagaaaagt
tagaaaagaacaacgtgggaaactgcaccagtgtgaagccagagaagtcc
agagccagaagactccttagcaatggactattgattctgattccttcggg
ttttaattttttgttttcttctgtcttgcatgagaagctcagctgtagag
aaggtctaaattcctccaagtagacagctgcaaggccatagcagcagcac
aggtccttggaggtgcctctcaccttgcatcagagcatctcctccgaccc
tgctgaatgccatcctgatgggtttgactgtccatcttcactgccacatg
gaaaagtctgagttagcgcccttcagggcccaaacacctggggtctggtg
tcaggagaagtgacctccgagactgtgtctacacactggcattgagccga
tgtgcgaatgagagcccaagggatagaatggcatctggacccttaaagtg
tggccagcaggatcagcgagaacatgtagatgatcagcaaagaagggttt
aaaggttggactgctcatgctgtggctgttccagtttcctgttctcagag
acacagtaagagagggcagctaagagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_32568031_32569183
seq2: B6Ng01-167A12.b_46_1174 (reverse)

seq1  ATGTCCTGAAATTAGCACATATGTAGTATACAGAAGGGTTTTTTTTTAAA  50
      |||||| |||| ||||||| |||||| |||||||||||    ||||||||
seq2  ATGTCC-GAAA-TAGCACA-ATGTAG-ATACAGAAGGG----TTTTTAAA  42

seq1  TCAAATATTCATTGAATAAAGGGATGAAGTGTAAACACCCTAAGATTTGA  100
      || |||| ||| ||||||||||||||||| || ||||||   ||| ||||
seq2  TC-AATA-TCA-TGAATAAAGGGATGAAGGGT-AACACC--TAGA-TTGA  85

seq1  CAGACTATCTTATCCATTTTAATCCAACTATGTACATTACAATGAGAGAC  150
      ||||||||| |||||||||  ||||||||||||||| |||||||||||| 
seq2  CAGACTATC-TATCCATTT--ATCCAACTATGTACA-TACAATGAGAGA-  130

seq1  CCAAGTAATGCTTAGAATATTTACCAACAATTTAAATACAAATAGATATA  200
      ||||||||||||||| ||| ||||| ||||||||||||||||||||||||
seq2  CCAAGTAATGCTTAG-ATA-TTACC-ACAATTTAAATACAAATAGATATA  177

seq1  TCCTTTGCTCTATTAAGGAGCCTCCGGGAATTATCTAGAAATATTTGAAT  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCTCTA-TAAGGAGCCTCCGGGAATTATCTAGAAATATTTGAAT  226

seq1  CAGAGAACAAAACAAAAATATATCTTCAGACACTTCTAATAATTCGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACAAAACAAAAATATATCTTCAGACACTTCTAATAATTCGTTGT  276

seq1  TGATAGCTGTTGCATGTAATTTTATACTCTACCCACCTTTAGCTCTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTGTTGCATGTAATTTTATACTCTACCCACCTTTAGCTCTGGGA  326

seq1  AGAGACCACACTACCAGTCCTCCTCCAGTTTTCTTTGAATCAGCAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCACACTACCAGTCCTCCTCCAGTTTTCTTTGAATCAGCAGATAA  376

seq1  AAGACACAGACACACAGTTGTTCAATTTCACTTGCCTTCTTGGCACAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACAGACACACAGTTGTTCAATTTCACTTGCCTTCTTGGCACAATT  426

seq1  GATAGGTGCTACAATCTACCACCTGGAAAAGCATGCCCTTATTAATATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTGCTACAATCTACCACCTGGAAAAGCATGCCCTTATTAATATCT  476

seq1  TATCTAAGTCTTACCCACTTGTTCTAAACTTCAGTTGCTAATCTTCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGTCTTACCCACTTGTTCTAAACTTCAGTTGCTAATCTTCCCTG  526

seq1  ATCACCCACCTATAAGAGTGGCCTGTGTGGCCACTCCATTTTGAGATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCACCTATAAGAGTGGCCTGTGTGGCCACTCCATTTTGAGATCTC  576

seq1  ACATGGTTGCCCAATTTTCTTCTCTCCAAAGCATGGCAATCTCTGTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTGCCCAATTTTCTTCTCTCCAAAGCATGGCAATCTCTGTTCTC  626

seq1  TGTCCTTGCAGCTTCTTTTCTAACAGGGACCCAGAAGTACCACCTATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGCAGCTTCTTTTCTAACAGGGACCCAGAAGTACCACCTATACC  676

seq1  GTCTGTCAAGCAATTGATCCATGGCTTTCTTTACTGACAAAACAAGAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCAAGCAATTGATCCATGGCTTTCTTTACTGACAAAACAAGAACC  726

seq1  AATTGGGAATCAGGACCATGCATCAGAACCAACCCCTACAGATAGTATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGAATCAGGACCATGCATCAGAACCAACCCCTACAGATAGTATAG  776

seq1  TTTTAAAAAACTGATTCTCGCATTCTTTTCTGTCCCCTTACTAATAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAACTGATTCTCGCATTCTTTTCTGTCCCCTTACTAATAAGTC  826

seq1  TCTCATTTTGGCTTAATGTACAAAATAAAGCAATTAACATTTGGTCAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTGGCTTAATGTACAAAATAAAGCAATTAACATTTGGTCAAGG  876

seq1  ATATACCAATGATAATGGCAAGTCAACTTAAAAGTGTGAAGGCAGGAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCAATGATAATGGCAAGTCAACTTAAAAGTGTGAAGGCAGGAGGG  926

seq1  ATGTCTTCTTCCCTTTCTGTGTCCTGCTTTGTGTGGTATGTATATAATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCTTCCCTTTCTGTGTCCTGCTTTGTGTGGTATGTATATAATGG  976

seq1  ACAGAGCTCCAGTGGCTATAGACCAGAAAGTAACATTTGGAGTAACGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTCCAGTGGCTATAGACCAGAAAGTAACATTTGGAGTAACGTTC  1026

seq1  TTCTCTATGACAGCAGAGCAAGATAAATAGTACCTAGATTCCTTGTGTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATGACAGCAGAGCAAGATAAATAGTACCTAGATTCCTTGTGTCA  1076

seq1  GGAAGCATCCTTGGTTGTCCCCAATGATCACTTTTGGACTTTATTATGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATCCTTGGTTGTCCCCAATGATCACTTTTGGACTTTATTATGAA  1126

seq1  TTC  1153
      |||
seq2  TTC  1129

seq1: chr6_32446320_32447510
seq2: B6Ng01-167A12.g_67_1245

seq1  GAATTCCAGATGGATGCACCGGCCCATAAGGGCTGGAACAAGAGGAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGGATGCACCGGCCCATAAGGGCTGGAACAAGAGGAACAG  50

seq1  GCACAGCCCTCCCCCAGTCCACCTTCTCCAGCCACCTCGACTTAATAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCCTCCCCCAGTCCACCTTCTCCAGCCACCTCGACTTAATAGAG  100

seq1  CCCTTGCCTAAGGGCACAAGGCCAAGTAGAATAGACTACACCATTTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCCTAAGGGCACAAGGCCAAGTAGAATAGACTACACCATTTGGAT  150

seq1  CCACCTAGCATGGCTGGGCTAACAATTCTCACGTGCATGCCAGCTCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAGCATGGCTGGGCTAACAATTCTCACGTGCATGCCAGCTCTAGG  200

seq1  GAAGGGTAAATCAATCCACTCATGCAGCCTGATTCGCACAACAGCCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTAAATCAATCCACTCATGCAGCCTGATTCGCACAACAGCCTACA  250

seq1  ACTGAAGGCAGAGAAAGGACATGCAACTGTCATCACCTCCACAACAGCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGCAGAGAAAGGACATGCAACTGTCATCACCTCCACAACAGCGT  300

seq1  ATCTCCTCAGCTCGAGCCAGGCCCATGACAGTGAAATACCGTGGGGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCAGCTCGAGCCAGGCCCATGACAGTGAAATACCGTGGGGGACT  350

seq1  GACTGTCTCCACAATAACTAAAACAGTGGCATCTCACTCCTACCTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCTCCACAATAACTAAAACAGTGGCATCTCACTCCTACCTTCTTC  400

seq1  AGCTTGCCACTTTTGGTGCCCACGAAGGCCAGTGAGTGGTTCTTGTAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCCACTTTTGGTGCCCACGAAGGCCAGTGAGTGGTTCTTGTAGAC  450

seq1  ATAGGCGATGACAGAAGTCATGCGGTCCCTGTCTTCTGTGAAGACTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCGATGACAGAAGTCATGCGGTCCCTGTCTTCTGTGAAGACTGGAA  500

seq1  TGCCACGCACCATTTCGGAAACTCCCAGAGGAGCATTCATATCCAGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACGCACCATTTCGGAAACTCCCAGAGGAGCATTCATATCCAGGCCA  550

seq1  CAGAAGTTGTCATCAATAGTAAGGAGCTGAAAAGTAAATGAGAGAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTGTCATCAATAGTAAGGAGCTGAAAAGTAAATGAGAGAAAAGT  600

seq1  TAGAAAAGAACAACGTGGGAAACTGCACCAGTGTGAAGCCAGAGAAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGAACAACGTGGGAAACTGCACCAGTGTGAAGCCAGAGAAGTCC  650

seq1  AGAGCCAGAAGACTCCTTAGCAATGGACTATTGATTCTGATTCCTTCGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGAAGACTCCTTAGCAATGGACTATTGATTCTGATTCCTTCGGG  700

seq1  TTTTAATTTTTTGTTTTCTTCTGTCTTGCATGAGAAGCTCAGCTGTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTTTGTTTTCTTCTGTCTTGCATGAGAAGCTCAGCTGTAGAG  750

seq1  AAGGTCTAAATTCCTCCAAGTAGACAGCTGCAAGGCCATAGCAGCAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTAAATTCCTCCAAGTAGACAGCTGCAAGGCCATAGCAGCAGCAC  800

seq1  AGGTCCTTGGAGGTGCCTCTCACCTTGCATCAGAGCATCTCCTCCGACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTTGGAGGTGCCTCTCACCTTGCATCAGAGCATCTCCTCCGACCC  850

seq1  TGCTGAATGCCATCCTGATGGGTTTGACTGTCCATCTTCACTGCCACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATGCCATCCTGATGGGTTTGACTGTCCATCTTCACTGCCACATG  900

seq1  GAAAAGGTCTGAGTTAGCGCCCTTCAGGGGCCCCAAACACCTGGGGTCTG  950
      ||||| |||||||||||||||||||||||  |||||||||||||||||||
seq2  GAAAA-GTCTGAGTTAGCGCCCTTCAGGG--CCCAAACACCTGGGGTCTG  947

seq1  GTGTCAGGGAGAAGTGACCTCCGAGACTGTGTCTACACACTGGCATTGGA  1000
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGTCA-GGAGAAGTGACCTCCGAGACTGTGTCTACACACTGGCATT-GA  995

seq1  GCCGATGTGCGAATGAGAGCTCAAAGGGATAGAATGGCATCTGGACACTT  1050
      |||||||||||||||||||| | ||||||||||||||||||||||| |||
seq2  GCCGATGTGCGAATGAGAGC-CCAAGGGATAGAATGGCATCTGGACCCTT  1044

seq1  AAAGTGTGGCCAGCAGGATCAGCGAG-ACATGGCCAGATGATCAGCAAAG  1099
      |||||||||||||||||||||||||| |||||   |||||||||||||||
seq2  AAAGTGTGGCCAGCAGGATCAGCGAGAACATG--TAGATGATCAGCAAAG  1092

seq1  AAGGAGGTTTCAAAGGTTTGAACCTGCTCATGCTGTTGCTGT--CAGTTT  1147
      |||  ||||| ||||||| ||  ||||||||||||| |||||  ||| ||
seq2  AAG--GGTTT-AAAGGTTGGA--CTGCTCATGCTGTGGCTGTTCCAG-TT  1136

seq1  TCCTGTCTCCCAGAG-CACAGTAAAGAG-GGGCAGCTAGAGAGTTG  1191
      |||||| || ||||| |||||| ||||| ||||||||| |||||||
seq2  TCCTGT-TCTCAGAGACACAGT-AAGAGAGGGCAGCTA-AGAGTTG  1179