BAC Information

Click to search

BAC

Clone NameB6Ng01-168D18
Chromosome6 (Build37)14 (Build37)
Map Location 77,387,087 - 77,388,072118,926,121 - 118,926,799
singlet/doubletsingletsinglet
Overlap geneCtnna2
Upstream geneLOC668153, EG668155, LOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168D18.bB6Ng01-168D18.g
ACCDH959526DH959527
length1,038678
definitionDH959526|Mus musculus domesticus DNA, BAC clone: B6Ng01-168D18, 5' end.DH959527|Mus musculus domesticus DNA, BAC clone: B6Ng01-168D18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,387,087 - 77,388,072)(118,926,121 - 118,926,799)
sequence
gaattcttggactgcgggggtctggtttgctgaggctccgccctggacgc
ccttgggaccccactaccctgacttgtatgggtatgtttttaccctggca
tatacgcatctgggtttgggaggattatggacctatgtacaattttgtgg
agttctctatggagcccgggctttgagttccttgtattttgtttcttctg
gataacagctggatgtctcacaggctcttgcacccgggttccttgttctg
cctctgcggaacgcaatcatcaaaaaaatgaatgaagtaaaagaaaagga
gtgtttacagagttgatgtatgtaaagacctacgcatgtatgttgcacta
cagagggacaaatataattccttcttcggccaataatatggctcagcata
tataactgcttactgccaagcagactgacttgagtgtgatcctcagaatc
catgtattagaagaagagaactgacttcaacaagttgtcctcagatatct
gcacatgctttatagcacatgaatgtacacatatgtacatacatacatac
acacacacacaaataaatataagaacagcatttaaattctctccctctat
aagaggaacctagttttgttgtaaactacaagaccccacagaaattgatt
cttctgtgctgaattgaagtatttaagaaagttatatgttcaactgtcat
aacaaactaattagaaagtgaacagggagtcattatagaaccatgtcaat
ttgaatcaaagttcttggtcagagacgtgagcatctaggcatctcccttg
caatatatagtgctttcctcggaaaacagctacaaggcagagtaaaatga
gtctgattaagatcaagcaactgggctttaaatctaactccatttgactg
aggactctgaacaggtctagccaattcctttaacaaagtccctagcttta
atctttgaaggcaatatgaaattcaaaatggaatggaaagtattttctca
tggctagacatttcttgatgtgaatatagtatagtaaa
gaattcagtattttaaggtgttggtttacttaatagctctccccactccc
ccgcttctacccgctcgtcgcctgtttttatcctcgtctcccatgctagg
aggataaggcacggggcccggggctactgctgttcctcccagaaaaggca
accttccgtccccaacgtgtttctctgacgtctttggttgtagcattgcc
tcatcgctcaactgacatgtctaatgttccctcttaaaaatatttactcc
tgcgtatgactcaaacagtcactgcgatatactggatttctgaccctctc
tctgtatgtggattatccttctgtagcaagagattattgatgagagggca
taaactcttgattttacaacccccccttttttaattggatagttttttta
catttcaaatattatcccctttcctggtttcccctccaaaaactccctat
cccaccccctcatccccttcttctatgagggtgctcccttacccacccat
acccacttccgtgtcctggcattcccctacactggagcatcgagcctttc
taggaccacattgatgcccagtaaggccatcctatgctacatatgtggct
ggagccatgggtccctccatgtgtactcttgggttggtgctttagtccct
ggaagctctgggggagcggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77387087_77388072
seq2: B6Ng01-168D18.b_113_1079 (reverse)

seq1  TTTACCTATACTATATTCACATCAAGAAATTGTCTAGCCATGAGAAAATA  50
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTA-CTATACTATATTCACATCAAGAAA-TGTCTAGCCATGAGAAAATA  48

seq1  CTTTCCATATCCATTTTGAATTTCATATTTGCCTTCAAGAATTAAAGCTA  100
      |||||||| |||||||||||||||||| ||||||||||  ||||||||||
seq2  CTTTCCAT-TCCATTTTGAATTTCATA-TTGCCTTCAAAGATTAAAGCTA  96

seq1  GGGACTTTGTTAAAGGAATTGGCTAGACCTGTTCAGAGTCCTCAGTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTTGTTAAAGGAATTGGCTAGACCTGTTCAGAGTCCTCAGTCAAA  146

seq1  TGGAGTTAGA-TTAAAGCCCAGTTGCTTGATCTTAATTCAGACTCATTTT  199
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TGGAGTTAGATTTAAAGCCCAGTTGCTTGATCTTAA-TCAGACTCATTTT  195

seq1  ACTCTGCCTTTGTAGCTGTTTTCCGAGG-AAGCACTATATATTGCAAGGG  248
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  ACTCTGCC-TTGTAGCTGTTTTCCGAGGAAAGCACTATATATTGCAAGGG  244

seq1  AGATGCCTAGATGCTCACGTCTCTGACCAAGAACTTTGATTCAAATTGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTAGATGCTCACGTCTCTGACCAAGAACTTTGATTCAAATTGAC  294

seq1  ATGGTTCTATAATGACTCCCTGTTCACTTTCTAATTAGTTTGTTATGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTATAATGACTCCCTGTTCACTTTCTAATTAGTTTGTTATGACA  344

seq1  GTTGAACATATAACTTTCTTAAATACTTCAATTCAGCACAGAAGAATCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACATATAACTTTCTTAAATACTTCAATTCAGCACAGAAGAATCAA  394

seq1  TTTCTGTGGGGTCTTGTAGTTTACAACAAAACTAGGTTCCTCTTATAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGGGTCTTGTAGTTTACAACAAAACTAGGTTCCTCTTATAGAG  444

seq1  GGAGAGAATTTAAATGCTGTTCTTATATTTATTTGTGTGTGTGTGTATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAATTTAAATGCTGTTCTTATATTTATTTGTGTGTGTGTGTATGT  494

seq1  ATGTATGTACATATGTGTACATTCATGTGCTATAAAGCATGTGCAGATAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTACATATGTGTACATTCATGTGCTATAAAGCATGTGCAGATAT  544

seq1  CTGAGGACAACTTGTTGAAGTCAGTTCTCTTCTTCTAATACATGGATTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACAACTTGTTGAAGTCAGTTCTCTTCTTCTAATACATGGATTCT  594

seq1  GAGGATCACACTCAAGTCAGTCTGCTTGGCAGTAAGCAGTTATATATGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCACACTCAAGTCAGTCTGCTTGGCAGTAAGCAGTTATATATGCT  644

seq1  GAGCCATATTATTGGCCGAAGAAGGAATTATATTTGTCCCTCTGTAGTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATATTATTGGCCGAAGAAGGAATTATATTTGTCCCTCTGTAGTGC  694

seq1  AACATACATGTGTAGGTATATATAGATATTGCTTCTGTAAACACTTACTT  748
      |||||||||| |||||| | || | | ||    ||||||||||| | |||
seq2  AACATACATGCGTAGGTCTTTACATACATCAACTCTGTAAACAC-TCCTT  743

seq1  TTCTTTTAATTCATTCATTTCTTTGATGATTGCTTTTGGCAGATGTCTAT  798
      |||||||| ||||||||||| |||||||||||| ||  ||||| |   | 
seq2  TTCTTTTACTTCATTCATTTTTTTGATGATTGCGTTCCGCAGAGGCAGAA  793

seq1  GAACGTGCACTGGTGCAAGAGCCTGTGAGACATCCAGCTGTTATCCACTT  848
       || |  | | ||||||||||||||||||||||||||||||||||||   
seq2  CAAGGAACCCGGGTGCAAGAGCCTGTGAGACATCCAGCTGTTATCCA-GA  842

seq1  TTTAAGTAAATACTACTTTGTCAGACTGAGAGATCACTCAAATGCCTTAC  898
         ||  |||||| |     ||| |    | | ||  |  |   |   ||
seq2  AGAAACAAAATACAAGGAACTCAAAGCCCGGGCTCCATAGAGAACTCCAC  892

seq1  ATTATTTGAGATGAGTTTTAGGAACCTATGAA----AGATGTAGAGTTAT  944
      |  |||  | || || |  |  | |||   ||    |||||      |||
seq2  AAAATTGTACAT-AGGTCCATAATCCTCCCAAACCCAGATG----CGTAT  937

seq1  TGATTTGAAGTT--AAACATACCCACACTTATAGATATACAAGT  986
        ||   | | |  ||||||||||            ||||||||
seq2  --ATGCCAGGGTAAAAACATACCC------------ATACAAGT  967

seq1: chr14_118926121_118926799
seq2: B6Ng01-168D18.g_69_746 (reverse)

seq1  CCCCCCCCCCCGCTCCCCCAGAGCTTCCAGGGACTAAAGCACCAACCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCGCTCCCCCAGAGCTTCCAGGGACTAAAGCACCAACCCAA  50

seq1  GAGTACACATGGAGGGACCCATGGCTCCAGCCACATATGTAGCATAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACATGGAGGGACCCATGGCTCCAGCCACATATGTAGCATAGGAT  100

seq1  GGCCTTACTGGGCATCAATGTGGTCCTAGAAAGGCTCGATGCTCCAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTACTGGGCATCAATGTGGTCCTAGAAAGGCTCGATGCTCCAGTGT  150

seq1  AGGGGAATGCCAGGACACGGAAGTGGGTATGGGTGGGTAAGGGAGCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATGCCAGGACACGGAAGTGGGTATGGGTGGGTAAGGGAGCACCC  200

seq1  TCATAGAAGAAGGGGATGAGGGGGTGGGATAGGGAGTTTTTGGAGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAGAAGGGGATGAGGGGGTGGGATAGGGAGTTTTTGGAGGGGAA  250

seq1  ACCAGGAAAGGGGATAATATTTGAAATGTAAAAAAACTATCCAATTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAAGGGGATAATATTTGAAATGTAAAAAAACTATCCAATTAAAA  300

seq1  AAGGGGGGGTTGTAAAATCAAGAGTTTATGCCCTCTCATCAATAATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGGGTTGTAAAATCAAGAGTTTATGCCCTCTCATCAATAATCTCT  350

seq1  TGCTACAGAAGGATACTCACTATCGTGTGAGAGGGGACGAATGGCAGTAT  400
      ||||||||||||||| ||   ||   | |||||||   |||   ||||||
seq2  TGCTACAGAAGGATAATCCACATACAGAGAGAGGGTCAGAAATCCAGTAT  400

seq1  CTCACAGTGACTGTTTCTGTCATTAGCAGGAGTAAATATTTTGAAGAGGG  450
       || ||||||||||||  |||||  ||||||||||||||||| |||||||
seq2  ATCGCAGTGACTGTTTGAGTCATACGCAGGAGTAAATATTTTTAAGAGGG  450

seq1  AACAGTCCGCATGTTGACTAAACCTTCTGCCATTGCTACAGCCAGCTACC  500
      |||| |   |||||    | | |  |  | || ||||||| |||   || 
seq2  AACATTAGACATGTCAGTTGAGCGATGAGGCAATGCTACAACCAAAGACG  500

seq1  TCCGAGAAACACCTTCGGGATGGAAGCTTGCCTTACCAGGGAGGAACAGC  550
      || ||||||||| || |||| ||||| |||||||  | ||||||||||||
seq2  TCAGAGAAACACGTTGGGGACGGAAGGTTGCCTTTTCTGGGAGGAACAGC  550

seq1  AGTGACCCCGGGCCCCCTGCCTTCTACTCCTAGCATGGGAGATGAGGCTA  600
      |||  ||||||||||| |||||| | |||||||||||||||| |||| ||
seq2  AGTAGCCCCGGGCCCCGTGCCTTATCCTCCTAGCATGGGAGACGAGGATA  600

seq1  AAAACTGGTGACGAGCGGGTAGAAGTGGGGGAGTGGGGAGAGCTATTAAT  650
      ||||| || |||||||||||||||| ||||||||||||||||||||||| 
seq2  AAAACAGGCGACGAGCGGGTAGAAGCGGGGGAGTGGGGAGAGCTATTAAG  650

seq1  TAAACCAACAACCTCAAAATACTGAATTC  679
      ||||||||| |||| ||||||||||||||
seq2  TAAACCAAC-ACCTTAAAATACTGAATTC  678