BAC Information

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BAC

Clone NameB6Ng01-168H22
Chromosome11 (Build37)6 (Build37)
Map Location 108,694,649 - 108,695,763102,572,099 - 102,572,881
singlet/doubletsingletsinglet
Overlap geneCcdc46
Upstream geneCacng5, Prkca, Apoh, LOC100041381, Olfr1397-ps1, LOC629945
Downstream geneAxin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168H22.bB6Ng01-168H22.g
ACCDH959719DH959720
length1,1271,007
definitionDH959719|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H22, 5' end.DH959720|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,694,649 - 108,695,763)(102,572,099 - 102,572,881)
sequence
gattcagtgtggtgaggcacggggcttcgttccctgggtgacccgattca
taatcctgaagtaggacctactgaattttcattaattttaacgtaactta
tgttttaaaggatcttactgaattttcaatgaagcttgctgaagtttgac
tgaccaatgtaagaactgtattggttaaatgtttttgcctctttttcttc
cctttctctttggtactagagagcaaacccttgtactcttgcatgcttca
accactgagctacaaccccagccctgtggtggtcagttaccactccctct
tcacaacttcgacatttaggaaaatctgaatttcagggaaggcgaggtca
agctgaagcctgaagaacacatccagtgttataaacttggcactttttgg
aattcagcttctaaacgcgtgatacttcatgataaaacagtttacagtta
tgtataaaatactgccacaaatcgaaacctcctgggtatatcagctatga
ggaattttgaaaatcacaatcactacaaaacaaacagaaaaaaagcaaga
cagcagtatgttgctgtcctgcctatgagagagccctgctgtgatggcca
tgcctctgctagcatctaatgaaagtacattttgaaatggacagaatgca
aaaggtttggattcctcttttaagtatcagtgttccttaaagaacgtggc
accacactagctggagaaatgtgtgctcttgaaccagagaaaccacttac
agttactaagtacctactgtgtgcctgttctagaacctctgaagggtggt
gacatggaggaggctcttctaaagtgagcttgcactgtgctcctgacaca
gagtgtcctgggtgtccctttcagaagctccctctaaccatctctattgc
tgtagacctgtctgccctctgccctctgttccccacctctccagctgttc
attctctctgcttgctgatgtcatctagtctccttggctgagctgccatg
atcaagtcatgtagccctaaccttagctctcatggcaggatgatcagcac
atccaaagcgtgctctttccctgcaatgacaacagcactacttagtgctc
agtctgtactccgaatcaagtcgaatt
gaattctccctgtggggattcatggaattggcaactccagtcccatgaga
tctggtgttctctactgctttcctcttgtactgcatgcatgtgatttgca
tacatgcacatacactaaacacccttccatgttgctctaatgaatgaata
ataatgtttacagagaaaaggtaggggaaaggatttaaaggtttatctga
gttcaaatagtttatgatatgttaggggtgggggaccctgtcatgagctt
gtaaacaaagcactggggatgcaaagaaaggcagatcttcagggcacagt
ggctagcaaccataccattctgattgaattccggagtagtgaaagaacct
atcacaaagaattaaggtctgaggatcatctgatattattttctgggtac
cctttaatgcatgagctcacacatgtgattccccagcccatagtcacgtg
gtcatcaggtaactaagagaagtggagagttattatcgaagtctaacttg
ttggttttaaacactatggtcacaatattctatttttaaaattattttga
ttcccacatgttaaatacttggtttggctctctatttgctaagaagacgt
ggattgacaactgagattgtaattgctcttatattaaaagaaaaatattg
tagaactcagcattctagacccaaagatgtttatttacaggatatattca
taagcagaaaaaaaggaagtaaaacatagatgaacaattatcaattaaaa
atactgggaagaatttattaaatatctattatgtattaatattctacatt
gacttcttaaaccccaaaacaggtcttggtagtgtcatctccatgggaag
actaagatacctgaagtcttacagtaaagtatggttgaacctgaaatcta
ttcaggtgtttgatctggagttagaccactatcattgctcttggtataag
agcagatgatagaagagttgctacgaatgaatggtagagagttgctacaa
attggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_108694649_108695763
seq2: B6Ng01-168H22.b_61_1164

seq1  GCTTCATTCCCTGAGTGACCAGATTCATAATCCTGAAGTAGGACCTACTG  50
      ||||| ||||||| |||||| |||||||||||||||||||||||||||||
seq2  GCTTCGTTCCCTGGGTGACCCGATTCATAATCCTGAAGTAGGACCTACTG  50

seq1  AATTTTCATTAATTTTAACGTAACTTATGTTTTAAAGGATCTTACTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATTAATTTTAACGTAACTTATGTTTTAAAGGATCTTACTGAAT  100

seq1  TTTCAATGAAGCTTGCTGAAGTTTGACTGACCAATGTAAGAACTGTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGAAGCTTGCTGAAGTTTGACTGACCAATGTAAGAACTGTATTG  150

seq1  GTTAAATGTTTTTGCCTCTTTTTCTTCCCTTTCTCTTTGGTACTAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGTTTTTGCCTCTTTTTCTTCCCTTTCTCTTTGGTACTAGAGAG  200

seq1  CAAACCCTTGTACTCTTGCATGCTTCAACCACTGAGCTACAACCCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTTGTACTCTTGCATGCTTCAACCACTGAGCTACAACCCCAGCC  250

seq1  CTGTGGTGGTCAGTTACCACTCCCTCTTCACAACTTCGACATTTAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGGTCAGTTACCACTCCCTCTTCACAACTTCGACATTTAGGAAA  300

seq1  ATCTGAATTTCAGGGAAGGCGAGGTCAAGCTGAAGCCTGAAGAACACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATTTCAGGGAAGGCGAGGTCAAGCTGAAGCCTGAAGAACACATC  350

seq1  CAGTGTTATAAACTTGGCACTTTTTGGAATTCAGCTTCTAAACGCGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTATAAACTTGGCACTTTTTGGAATTCAGCTTCTAAACGCGTGAT  400

seq1  ACTTCATGATAAAACAGTTTACAGTTATGTATAAAATACTGCCACAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGATAAAACAGTTTACAGTTATGTATAAAATACTGCCACAAATC  450

seq1  GAAACCTCCTGGGTATATCAGCTATGAGGAATTTTGAAAATCACAATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCCTGGGTATATCAGCTATGAGGAATTTTGAAAATCACAATCAC  500

seq1  TACAAAACAAACAGAAAAAAAGCAAGACAGCAGTATGTTGCTGTCCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACAAACAGAAAAAAAGCAAGACAGCAGTATGTTGCTGTCCTGCC  550

seq1  TATGAGAGAGCCCTGCTGTGATGGCCATGCCTCTGCTAGCATCTAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGAGCCCTGCTGTGATGGCCATGCCTCTGCTAGCATCTAATGAA  600

seq1  AGTACATTTTGAAATGGACAGAATGCAAAAGGTTTGGATTCCTCTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTTTGAAATGGACAGAATGCAAAAGGTTTGGATTCCTCTTTTAA  650

seq1  GTATCAGTGTTCCTTAAAGAACGTGGCACCACACTAGCTGGAGAAATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGTGTTCCTTAAAGAACGTGGCACCACACTAGCTGGAGAAATGTG  700

seq1  TGCTCTTGAACCAGAGAAACCACTTACAGTTACTAAGTACCTACTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGAACCAGAGAAACCACTTACAGTTACTAAGTACCTACTGTGTG  750

seq1  CCTGTTCTAGAACCTCTGAAGGGTGGTGACATGGAGGAGGCTCTTCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTAGAACCTCTGAAGGGTGGTGACATGGAGGAGGCTCTTCTAAA  800

seq1  GTGAGCTTGCACTGTGCTCCTGACACAGAGTGTCCTGGGTGTCCCTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTTGCACTGTGCTCCTGACACAGAGTGTCCTGGGTGTCCCTTTCA  850

seq1  GAAGCTCCCTCTAACCATCTCTATTGCTGTAGACCTGTCTGCCCTCTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCCTCTAACCATCTCTATTGCTGTAGACCTGTCTGCCCTCTGCC  900

seq1  CTCTGTTCCCCACCTCTCCCAGCTGTTCATTCTCTCTGCCTTGCTGATGT  950
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CTCTGTTCCCCACCTCT-CCAGCTGTTCATTCTCTCTG-CTTGCTGATGT  948

seq1  CATCTAGTCTCCTTGGCTGAGCTGCCATGATCCAAGTCATGTTAGCCCCT  1000
      ||||||||||||||||||||||||||||||| ||||||||| ||||||  
seq2  CATCTAGTCTCCTTGGCTGAGCTGCCATGAT-CAAGTCATG-TAGCCC--  994

seq1  TAACCTTAGCTCTCATGGCCAGGATGATCAGCACATCCCAAGCCGTGCCT  1050
      |||||||||||||||||| ||||||||||||||||||| ||| |||| ||
seq2  TAACCTTAGCTCTCATGG-CAGGATGATCAGCACATCCAAAG-CGTG-CT  1041

seq1  CTTTCCCTGCCACTGACACCAGCACTAC-TAGTGCTCAGTCTGGTACTTC  1099
      ||||||||| || ||||| ||||||||| ||||||||||||| |||| ||
seq2  CTTTCCCTG-CAATGACAACAGCACTACTTAGTGCTCAGTCT-GTAC-TC  1088

seq1  AGATTCAAGTCGAATT  1115
       || ||||||||||||
seq2  CGAATCAAGTCGAATT  1104

seq1: chr6_102572099_102572881
seq2: B6Ng01-168H22.g_297_1072

seq1  GGGACCCTGTCATGAGCTTGTAAACAAAGCACTGGGGATGCAAAGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCTGTCATGAGCTTGTAAACAAAGCACTGGGGATGCAAAGAAAGG  50

seq1  CAGATCTTCAGGGCACAGTGGCTAGCAACCATACCATTCTGATTGAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTCAGGGCACAGTGGCTAGCAACCATACCATTCTGATTGAATTC  100

seq1  CAGAGTAGTGAAAGAACCTATCACAAAGAATTAAGGTCTGAGGATCATCT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTAGTGAAAGAACCTATCACAAAGAATTAAGGTCTGAGGATCATCT  150

seq1  GATATTATTTTCTGGGTACCCTTTAATGCATGAGCTCACACATGTGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATTTTCTGGGTACCCTTTAATGCATGAGCTCACACATGTGATTC  200

seq1  CCCAGCCCATAGTCACGTGGTCATCAGGTAACTAAGAGAAGTGGAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCATAGTCACGTGGTCATCAGGTAACTAAGAGAAGTGGAGAGTT  250

seq1  ATTATCGAAGTCTAACTTGTTGGTTTTAAACACTATGGTCACAATATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCGAAGTCTAACTTGTTGGTTTTAAACACTATGGTCACAATATTCT  300

seq1  ATTTTTAAAATTATTTTGATTCCCACATGTTAAATACTTGGTTTGGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAATTATTTTGATTCCCACATGTTAAATACTTGGTTTGGCTCT  350

seq1  CTATTTGCTAAGAAGACGTGGATTGACAACTGAGATTGTAATTGCTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCTAAGAAGACGTGGATTGACAACTGAGATTGTAATTGCTCTTA  400

seq1  TATTAAAAGAAAAATATTGTAGAACTCAGCATTCTAGACCCAAAGATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAGAAAAATATTGTAGAACTCAGCATTCTAGACCCAAAGATGTT  450

seq1  TATTTACAGGATATATTCATAAGCAGAAAAAAAGGAAGT-AAACATAGAT  499
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATTTACAGGATATATTCATAAGCAGAAAAAAAGGAAGTAAAACATAGAT  500

seq1  GAACAATTATCAAATTAAAAATACTGGGAAGAATTTATTAAATATCTATT  549
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAACAATTATC-AATTAAAAATACTGGGAAGAATTTATTAAATATCTATT  549

seq1  ATGTATTAATATTCTACATTGACTTCTTAAACCCCAAAACAGGTCTTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTAATATTCTACATTGACTTCTTAAACCCCAAAACAGGTCTTGGT  599

seq1  AGTGTCATCTCCATGGGAAGACTAAGATACCTGAAGTCTTACAGTTAAAG  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTGTCATCTCCATGGGAAGACTAAGATACCTGAAGTCTTACAG-TAAAG  648

seq1  TATGGTTGAACCTGAAATCTATTCAGGGTGTTTGATTCTGGAGTTAGACC  699
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TATGGTTGAACCTGAAATCTATTCA-GGTGTTTGA-TCTGGAGTTAGACC  696

seq1  ACTATCATTTGCTCTTGGTATAAGAGCAAATGATAGAAGAGTTGCTACAA  749
      ||||||| |||||||||||||||||||| |||||||||||||||||||  
seq2  ACTATCA-TTGCTCTTGGTATAAGAGCAGATGATAGAAGAGTTGCTAC-G  744

seq1  AATGAATGGTAGAAGAGTTGCTACAAAATTGGCA  783
      |||||||||||| ||||||||||| |||||||||
seq2  AATGAATGGTAG-AGAGTTGCTAC-AAATTGGCA  776