BAC Information

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BAC

Clone NameB6Ng01-168L19
Chromosome6 (Build37)
Map Location 52,820,894 - 52,970,118
singlet/doubletdoublet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik, Cpvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168L19.bB6Ng01-168L19.g
ACCDH959897DH959898
length8741,055
definitionDH959897|Mus musculus domesticus DNA, BAC clone: B6Ng01-168L19, 5' end.DH959898|Mus musculus domesticus DNA, BAC clone: B6Ng01-168L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,820,894 - 52,821,768)(52,969,065 - 52,970,118)
sequence
gaattcagtgcttttagaaaagaaagagtaatttacattatttaatttct
agctgtgctaggttaatgctcttggcagctctttactggggctttgcgat
ctggctgcagaggttggtttctatggcgcactttctgtactcagctaatt
agctttctggtgagtgttttcccaacagacatcatctccctaaagccttg
aacacgtcctggcttctaaaaacaaaattactagtggttttttttttttt
ttttatctgtttgtttgtttgtttttgagtttcaggcttctggagggttg
agaccaaatctgatatttgccccacaaatgccaatggttcttagagcctc
caggagtcagcccagtccccaaactcaagacgcaatttgactactttttt
atcattgattgtaaggtcaataaaggatttgtttttgtgagcctggggtg
ctcagactatgcagggccacagtaaagcatgaacttgacttaaaagttca
ggcttgggaggctgaaacaaagggggagggcccaacccaccaaggttata
aattcttctgagggagaaaaaaaagactccacgagggccatttgcatttc
caaccttttacatcagcatcatgcttgctgccttttagttactctaggtt
ccagacttacttaagcaatgagtccctctgctggttctcaggcagatgac
cttgttcaccagcactgctctgatggtggaggtgacgtcctggcacaaaa
ggacagtgaaagagagtctaggaagccttggggaaagtgctgaggacctt
caaggcttttctcaaggatcacactttgattctgccccgagagacaccac
aacaataatgtataataagggcag
gaattccaaggaagaaatgttttagccatgaagccactgatcacaggggc
agtatgatcaaaggtgttttatcaatgttttatgtgtcagtgtctgtccc
aaatgtcccaggtttgagaggttagtgctgtgaataagaagatctgtgcg
ttgacatttttaatgtcaaaagtcacatctagtttagggaccaaatatct
gcctgtcttccttgttgtctccagggaaaaaggaaagaaatgatatgtat
aattttaaaggaacttcttaaagattttaatgattatatactccagtttt
acttacatacagagagaaggtgaagtgtttggggaagagattgggagtca
tttatttctctaatcttgggtagtctcggagagctcattgtgtatattca
ggtggatgcatttagaagggttccaaccaaagcagagggtgagcttttta
agagccctgtctttgtgagtgtatacattactggcatgcagcactgtcgt
gctgtgctgaatgttcccagccttactgtaactgatagcttttataccct
gaacaattggacctcgagactaccatgatatgataggttctgacattttt
gtatggatttgaatgaaaaacttaaccactgtttgatttgaggactagga
gtctttattttctgaagagctcaccaggtaagggtcatgctgtgccctct
atgggaccatgccctgtcactctcaaaggacaaatttcctagcataccta
gcttcactattcccaacagtgagaggtctcaggtgtatatctctgttctt
tggctaacatccatgaattttgatattctttgtgatctcttgtgtttatg
agcacagggggtactgtggaagacaaaaagacagaggaaggtggagtgag
cctcattttcagaaatcactctaccaggctgacttctgttgactcctgag
tctgctttagagaatgcatagacttccatcatgtcctgttgcactgggcc
ctaacaaacccttaataccacgcacagtttgttctcagcatcttggtgtt
ccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52820894_52821768
seq2: B6Ng01-168L19.b_45_918

seq1  GAATTCAGTGCTTTTAGAAAAGAAAGAGTAATTTACATTATTTAATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTTTTAGAAAAGAAAGAGTAATTTACATTATTTAATTTCT  50

seq1  AGCTGTGCTAGGTTAATGCTCTTGGCAGCTCTTTACTGGGGCTTTGCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCTAGGTTAATGCTCTTGGCAGCTCTTTACTGGGGCTTTGCGAT  100

seq1  CTGGCTGCAGAGGTTGGTTTCTATGGCGCACTTTCTGTACTCAGCTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCAGAGGTTGGTTTCTATGGCGCACTTTCTGTACTCAGCTAATT  150

seq1  AGCTTTCTGGTGAGTGTTTTCCCAACAGACATCATCTCCCTAAAGCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTGGTGAGTGTTTTCCCAACAGACATCATCTCCCTAAAGCCTTG  200

seq1  AACACGTCCTGGCTTCTAAAAACGAAATTACTAGTGGTTTTTTTTTTTTT  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACACGTCCTGGCTTCTAAAAACAAAATTACTAGTGGTTTTTTTTTTTTT  250

seq1  TTTTATCTGTTTGTTTGTTTGTTTTTGAGTTTCAGGCTTCTGGAGGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTGTTTGTTTGTTTGTTTTTGAGTTTCAGGCTTCTGGAGGGTTG  300

seq1  AGACCAAATCTGAGATTTGTCGCACAAATGCCATTGGTTCTTAGAGCCTC  350
      ||||||||||||| ||||| | ||||||||||| ||||||||||||||||
seq2  AGACCAAATCTGATATTTGCCCCACAAATGCCAATGGTTCTTAGAGCCTC  350

seq1  CAGGAGTCAGCCCAGTCCCCAAACTCAAGACGCAATTTGACTACATTTTT  400
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGGAGTCAGCCCAGTCCCCAAACTCAAGACGCAATTTGACTACTTTTTT  400

seq1  ATCATTGATTGTAAGGTCAATAAAGGATTTGTTTTTGTGAGCCTGGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGATTGTAAGGTCAATAAAGGATTTGTTTTTGTGAGCCTGGGGTG  450

seq1  CTCAGACTATGCAGGGCCACAGTAAAGCATGAACTTGACTTAGAAGTTCA  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCAGACTATGCAGGGCCACAGTAAAGCATGAACTTGACTTAAAAGTTCA  500

seq1  GGCTTGGGAGGCTGAAACAAAGGGGGAGGGCCCAGCCCAGCAAGGTTAGA  550
      |||||||||||||||||||||||||||||||||| |||| |||||||| |
seq2  GGCTTGGGAGGCTGAAACAAAGGGGGAGGGCCCAACCCACCAAGGTTATA  550

seq1  GATTCTTCTGAGGGAGAAAAGAAAGACTCCAGGAGGTCCATTTGCATTTC  600
       ||||||||||||||||||| |||||||||| |||| |||||||||||||
seq2  AATTCTTCTGAGGGAGAAAAAAAAGACTCCACGAGGGCCATTTGCATTTC  600

seq1  GAACCTTTTACATCAGCATCATGCTTGCTGCCTTTTAGTTACTCTAGGTC  650
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAACCTTTTACATCAGCATCATGCTTGCTGCCTTTTAGTTACTCTAGGTT  650

seq1  CCAGACTTACTTAAGCAATGAGTCCCTCTGCTGGTTCTCAGGCAGATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTTACTTAAGCAATGAGTCCCTCTGCTGGTTCTCAGGCAGATGAC  700

seq1  CTTGTTCACCAGCACTGCTCTGATGGTGGGGGTGACGTCCTGGCATGAAG  750
      ||||||||||||||||||||||||||||| |||||||||||||||  || 
seq2  CTTGTTCACCAGCACTGCTCTGATGGTGGAGGTGACGTCCTGGCACAAAA  750

seq1  GGACAGTGAAAAGGGGTCCAGGAAGCCTTGGGGAAGGTGCTGAGGACCTT  800
      |||||||||||  | ||| |||||||||||||||| ||||||||||||||
seq2  GGACAGTGAAAGAGAGTCTAGGAAGCCTTGGGGAAAGTGCTGAGGACCTT  800

seq1  AAAGGCTTTTCTCAAGGATCAGACTTTGATTCTGCCCTGAGAGACACCAC  850
       |||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  CAAGGCTTTTCTCAAGGATCACACTTTGATTCTGCCCCGAGAGACACCAC  850

seq1  AGTGAATAATGTATAATAAGGGCAG  875
      |   |||||||||||||||||||||
seq2  A-ACAATAATGTATAATAAGGGCAG  874

seq1: chr6_52969065_52970118
seq2: B6Ng01-168L19.g_69_1123 (reverse)

seq1  GCTGGAACA-CAAGATGCTGAGGAACAAACTGTGCGTAGTATTAAGGGTT  49
      ||||||||| ||||||||||| ||||||||||||||| ||||||||||||
seq2  GCTGGAACACCAAGATGCTGA-GAACAAACTGTGCGTGGTATTAAGGGTT  49

seq1  TGGTTAGGGCCAAGTGCAACAGGACATGAATGAAGTCTATGCATTCTCTA  99
      | ||||||||| |||||||||||||||||  |||||||||||||||||||
seq2  T-GTTAGGGCCCAGTGCAACAGGACATGATGGAAGTCTATGCATTCTCTA  98

seq1  AAGCAGGACTCAGGAGTCAACAGAAGTCAGCCTGGTAGAGTGATTTCTGA  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCA-GACTCAGGAGTCAACAGAAGTCAGCCTGGTAGAGTGATTTCTGA  147

seq1  AAATGAGGCTCACTCACCCTTCCTCTGTCTTTTTGTCTTCCACAGTA-CC  198
      |||||||||||||||  |||||||||||||||||||||||||||||| ||
seq2  AAATGAGGCTCACTCCACCTTCCTCTGTCTTTTTGTCTTCCACAGTACCC  197

seq1  CCTGTGCTCATAAACACAAGAGATCACAAAGAATATC-AAATTCATGGAT  247
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTGTGCTCATAAACACAAGAGATCACAAAGAATATCAAAATTCATGGAT  247

seq1  GTTAGCCAAAGAACAGAGATATACACCTGAGACCTCTCACTGTTGGGAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCAAAGAACAGAGATATACACCTGAGACCTCTCACTGTTGGGAAT  297

seq1  AGTGAAGCTAGGTATGCTAGGAAATTTGTCCTTTGAGAGTGACAGGGCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGCTAGGTATGCTAGGAAATTTGTCCTTTGAGAGTGACAGGGCAT  347

seq1  GGTCCCATAGAGGGCACAGCATGACCCTTACCTGGTGAGCTCTTCAG-AA  396
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTCCCATAGAGGGCACAGCATGACCCTTACCTGGTGAGCTCTTCAGAAA  397

seq1  ATAAAGACTCCTAGTCCTCAAATCAAACAGTGGTTAAGTTTTTCATTCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACTCCTAGTCCTCAAATCAAACAGTGGTTAAGTTTTTCATTCAA  447

seq1  ATCCATACAAAAATGTCAGAACCTATCATATCATGGTAGTCTCGAGGTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATACAAAAATGTCAGAACCTATCATATCATGGTAGTCTCGAGGTCC  497

seq1  AATTGTTCAGGGTATAAAAGCTATCAGTTACAGTAAGGCTGGGAACATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCAGGGTATAAAAGCTATCAGTTACAGTAAGGCTGGGAACATTC  547

seq1  AGCACAGCACGACAGTGCTGCATGCCAGTAATGTATACACTCACAAAGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCACGACAGTGCTGCATGCCAGTAATGTATACACTCACAAAGAC  597

seq1  AGGGCTCTTAAAAAGCTCACCCTCTGCTTTGGTTGGAACCCTTCTAAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTTAAAAAGCTCACCCTCTGCTTTGGTTGGAACCCTTCTAAATG  647

seq1  CATCCACCTGAATATACACAATGAGCTCTCCGAGACTACCCAAGATTAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCTGAATATACACAATGAGCTCTCCGAGACTACCCAAGATTAGA  697

seq1  GAAATAAATGACTCCCAATCTCTTCCCCAAACACTTCACCTTCTCTCTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATGACTCCCAATCTCTTCCCCAAACACTTCACCTTCTCTCTGT  747

seq1  ATGTAAGTAAAACTGGAGTATATAATCATTAAAATCTTTAAGAAGTTCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTAAAACTGGAGTATATAATCATTAAAATCTTTAAGAAGTTCCT  797

seq1  TTAAAATTATACATATCATTTCTTTCCTTTTTCCCTGGAGACAACAAGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTATACATATCATTTCTTTCCTTTTTCCCTGGAGACAACAAGGA  847

seq1  AGACAGGCAGATATTTGGTCCCTAAACTAGATGTGACTTTTGACATTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCAGATATTTGGTCCCTAAACTAGATGTGACTTTTGACATTAAA  897

seq1  AATGTCAACGCACAGATCTTCTTATTCACAGCACTAACCTCTCAAACCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAACGCACAGATCTTCTTATTCACAGCACTAACCTCTCAAACCTG  947

seq1  GGACATTTGGGACAGACACTGACACATAAAACATTGATAAAACACCTTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTGGGACAGACACTGACACATAAAACATTGATAAAACACCTTTG  997

seq1  ATCATACTGCCCCTGTGATCAGTGGCTTCATGGCTAAAACATTTCTTCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTGCCCCTGTGATCAGTGGCTTCATGGCTAAAACATTTCTTCCT  1047

seq1  TGGAATTC  1054
      ||||||||
seq2  TGGAATTC  1055