BAC Information

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BAC

Clone NameB6Ng01-168O22
Chromosome6 (Build37)
Map Location 9,578,028 - 9,709,647
singlet/doubletdoublet
Overlap genenone
Upstream geneIca1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168O22.bB6Ng01-168O22.g
ACCDH960042DH960043
length1,009471
definitionDH960042|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O22, 5' end.DH960043|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,708,648 - 9,709,647)(9,578,028 - 9,578,612)
sequence
gaattctgaggtgatgtcctataaaggaactgaatttctgggctttctta
cagaacacatgaacatgctggaaggaagccaagcaacaacaggcaaaggg
caagtgtgcttgtctggtcatcaccccagacaatgtgcaaatccatcatc
agccatttaaatgatgatcttcacatcatttcaatttcctagcttttggg
ttagtggagcagcagtaagctgcctatacattgctcctgctagatgttaa
ataaatcagaaaaagaattgtaatgttttaaaacaagaagtttgccaggc
agttgtggtgcacgcttttaatcccagcactcgggaggcagaagcaggca
gatttctgagttcgaggccagcctggtctacaaagtgagttccaggatag
ccagggctatacagagaaaccctgtcttgaaaaaccaaaataaaaacaaa
aaacaaaaacaaaaacaaaaaaaaacccaagaagttttaaagtaaattat
atataaggattagaacctttcatcaaggacaaatgaaaaatgactacata
atcggtagtgagctgcaatgaatatttgctgaaatatgggtattttatgt
taatgtttacaggtgattaattaaattaaattaatatctataatagcctg
tacatatttaaattatgagattttgtggggattctgccagatagaataag
taataaaaacaacaaattaatttctctcactctcaccactccttagttgc
ctatatatatatatatatatatatatatatatatatccaatatatatata
ttgcctatatatatattgcctattttttcattagctgtatatatatatat
atatatatatatatatatatatatatatatgtagcctatatatatattgc
ctatgtatatatatatatatatatatatatatattgcatatataaataga
ctatttttttcattagctgtatatatatgtaggcctaaaatatagtattt
acctatata

aaaaaggtcaacaatagacaaacaaaagacaaaaaagataatttctttca
aattatgaaaattatggtttttttatactcaactaaactggcatcataag
acatcttggaaatgttattttgatgaaacaatttagccattagattcatg
aagaaatttttttttgggggaggggtgaagaaagttagcaggaaattgga
ttttaaaagtcttttagtctttattcttttgtcaacatgatgctttctct
accctctagcttaaattctgatcaagtgaaaacagaatcagtcattgttc
tttggcataacatttctctttctctttctctttctctttctctttctctt
tctctttctctttctctttctctttctctttctctttctctttctctctc
tctctctctctctctctctctctctctctctctctctctctctctctctc
tctccctcactttctctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9708648_9709647
seq2: B6Ng01-168O22.b_48_1056 (reverse)

seq1  TATATAGGTAA----TATATATATAGG-CTACATATATATACAGCTAATG  45
      |||||||||||    ||||| | |||| ||||||||||||||||||||||
seq2  TATATAGGTAAATACTATAT-TTTAGGCCTACATATATATACAGCTAATG  49

seq1  -AAAAAATAGTCTATATATATATGCAATATATATATATATATATATATAT  94
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAGTCTATTTATATATGCAATATATATATATATATATATATAT  99

seq1  ATATACATAGGCAATATATATATAGGCTAC--ATATATATATATATATAT  142
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  ATATACATAGGCAATATATATATAGGCTACATATATATATATATATATAT  149

seq1  ATATATATATATATATATATATACAGCTAATGAAAAAATAGGCAATATAT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATACAGCTAATGAAAAAATAGGCAATATAT  199

seq1  ATATAGGCAATATATATATATTGG--ATATATATATATATATATATATAT  240
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  ATATAGGCAATATATATATATTGGATATATATATATATATATATATATAT  249

seq1  ATATATATAGGCAACTAAGGAGTGGTGAGAGTGAGAGAAATTAATTTGTT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAGGCAACTAAGGAGTGGTGAGAGTGAGAGAAATTAATTTGTT  299

seq1  GTTTTTATTACTTATTCTATCTGGCAGAATCCCCACAAAATCTCATAATT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTACTTATTCTATCTGGCAGAATCCCCACAAAATCTCATAATT  349

seq1  TAAATATGTACAGGCTATTATAGATATTAATTTAATTTAATTAATCACCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGTACAGGCTATTATAGATATTAATTTAATTTAATTAATCACCT  399

seq1  GTAAACATTAACATAAAATACCCATATTTCAGCAAATATTCATTGCAGCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATTAACATAAAATACCCATATTTCAGCAAATATTCATTGCAGCT  449

seq1  CACTACCGATTATGTAGTCATTTTTCATTTGTCCTTGATGAAAGGTTCTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCGATTATGTAGTCATTTTTCATTTGTCCTTGATGAAAGGTTCTA  499

seq1  ATCCTTATATATAATTTACTTTAAAACTTCTTGGGTTTTTTTTTGTTTTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATATATAATTTACTTTAAAACTTCTTGGGTTTTTTTTTGTTTTT  549

seq1  GTTTTTGTTTTTTGTTTTTATTTTGGTTTTTCAAGACAGGGTTTCTCTGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTTGTTTTTATTTTGGTTTTTCAAGACAGGGTTTCTCTGT  599

seq1  ATAGCCCTGGCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAA  649

seq1  CTCAGAAATCTGCCTGCTTCTGCCTCCCGAGTGCTGGGATTAAAAGCGTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCTGCCTGCTTCTGCCTCCCGAGTGCTGGGATTAAAAGCGTG  699

seq1  CACCACAACTGCCTGGCAAACTTCTTGTTTTAAAACATTACAATTCTTTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAACTGCCTGGCAAACTTCTTGTTTTAAAACATTACAATTCTTTT  749

seq1  TCTGATTTATTTAACATCTAGCAGGAGCAATGTATAGGCAGCTTACTGCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTATTTAACATCTAGCAGGAGCAATGTATAGGCAGCTTACTGCT  799

seq1  GCTCCACTAACCCAAAAGCTAGGAAATTGAAATGATGTGAAGATCATCAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACTAACCCAAAAGCTAGGAAATTGAAATGATGTGAAGATCATCAT  849

seq1  TTAAATGGCTGATGATGGATTTGCACATTGTCTGGGGTGATGACCAGACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGCTGATGATGGATTTGCACATTGTCTGGGGTGATGACCAGACA  899

seq1  AGCACACTTGCCCTTTGCCTGTTGTTGCTTGGCTTCCTTCCAGCATGTTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTTGCCCTTTGCCTGTTGTTGCTTGGCTTCCTTCCAGCATGTTC  949

seq1  ATGTGTTCTGTAAGAAAGCCCAGAAATTCAGTTCCTTTATAGGACATCAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCTGTAAGAAAGCCCAGAAATTCAGTTCCTTTATAGGACATCAC  999

seq1  CTCAGAATTC  1000
      ||||||||||
seq2  CTCAGAATTC  1009


seq1: chr6_9578028_9578612
seq2: B6Ng01-168O22.g_70_546

seq1  GAATTCAAAAAGGTCAACAATAGACAAACAAAAGACAAAAAAGATAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAGGTCAACAATAGACAAACAAAAGACAAAAAAGATAATTT  50

seq1  CTTTCAAATTATGAAAATTATGGTTTTTTTATACTCAACTAAACTGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATTATGAAAATTATGGTTTTTTTATACTCAACTAAACTGGCAT  100

seq1  CATAAGACATCTTGGAAATGTTATTTTGATGAAACAATTTAGCCATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACATCTTGGAAATGTTATTTTGATGAAACAATTTAGCCATTAGA  150

seq1  TTCATGAAGAAATTTTTTTTTGGGGGAGGGGTGAAGAAAGTTAGCAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAGAAATTTTTTTTTGGGGGAGGGGTGAAGAAAGTTAGCAGGAA  200

seq1  ATTGGATTTTAAAAGTCTTTTAGTCTTTATTCTTTTGTCAACATGATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTTTAAAAGTCTTTTAGTCTTTATTCTTTTGTCAACATGATGCT  250

seq1  TTCTCTACCCTCTAGCTTAAATTCTGATCAAGTGAAAACAGAATCAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACCCTCTAGCTTAAATTCTGATCAAGTGAAAACAGAATCAGTCA  300

seq1  TTGTTCTTTGGCATAACATTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTGGCATAACATTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTT  350

seq1  TCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTC  400

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  450

seq1  TCGCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTC  500
      || ||||||||||| |  ||||  |||                       
seq2  TCTCTCTCTCCCTCACTTTCTCTTTCT-----------------------  477

seq1  TCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTC  550
                                                        
seq2  --------------------------------------------------  477

seq1  CCTCTCTTTCTCTTTCTCTTTCACTTTCTCTTTCT  585
                                         
seq2  -----------------------------------  477


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