BAC Information

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BAC

Clone NameB6Ng01-169A17
Chromosome6 (Build37)6 (Build37)
Map Location 18,835,448 - 18,835,96844,633,737 - 44,634,697
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169A17.bB6Ng01-169A17.g
ACCDH960126DH960127
length978961
definitionDH960126|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A17, 5' end.DH960127|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,448 - 18,835,968)(44,633,737 - 44,634,697)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgacaacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagttagagtcacgcccagatattttatattat
ttgtgactattgagaaggtgttgtttcc
gaattcctcagctctagcttcctttaaaatagcatttccgatcttgtgtt
agttactgaaaaaaacacaaggatttgtttgtttgtttgtttttcactat
aacaatgcaattctgtttggaaggcgtctatttgtttatttaattttaca
tcttggtgggacaggttgatgcctcaggtaaaggggagttgcttaaagat
gaattgcatatttgtgaagctacctatgtatatgatgtgatatatttcaa
tgtagtttggatatatttggagcaactggggaagcttcatgtgctgattg
atcttatgaacaaaaaaaggagtaatggaatctctttcatgtgtcatttg
acaattttaaagttcatttataaccttacctgattcaaactagagatggt
atcacagctttgatgtaaaattatatgcttcatgaaagtgtggtttgttg
ggaggctggtaatggatttctcacctttctgcatgctttgtgagtacagg
cacttgcttcttttgatccaggccatatttctgtggatgcttgcagaata
aaatcctctggaagacagaggttagcactttcctttgagcagggggcagg
tctgtttacttgctacaataaagcaagccaaatgttcctatcgcatggaa
aggtcaaacaggattttgtgctgtgcattataaagaactctggttttctg
aacttggcattccctggaggccatgcaaatgtgctgcccatgagactgcc
aaagggcagtctgtgtctcaagagtaaacagtacaaatttgctggagtcc
atgaaggtgtggcaggctcacttcttaatctgcagagtaaaagtttcagg
cctttgcagttgctgacaagcctcacgcacacagtctgcaatagaaatgt
ggaatatgaatgctggctaatgtggtcattgtgaaattagtggggttttg
tttggtggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835448_18835968
seq2: B6Ng01-169A17.b_51_572 (reverse)

seq1  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  50

seq1  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100

seq1  GGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGT  150
      ||||||| || |||||||||||| |||||||||||||||||||||| |||
seq2  GGTTGTTGTCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGT  150

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250

seq1  GAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAG  299
       ||||||||| ||||||||||||||||||||||| |||||||| || | |
seq2  CAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCG  300

seq1  AGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  350

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  400

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  450

seq1  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGG  499
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGG  500

seq1  CTCAGAACTGAACAAAGAATTC  521
      ||||||||||||||||||||||
seq2  CTCAGAACTGAACAAAGAATTC  522

seq1: chr6_44633737_44634697
seq2: B6Ng01-169A17.g_64_1024

seq1  GAATTCCTCAGCTCTAGCTTCCTTTAAAATAGCATTTCCGATCTTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGCTCTAGCTTCCTTTAAAATAGCATTTCCGATCTTGTGTT  50

seq1  AGTTACTGAAAAAAACACAAGGATTTGTTTGTTTGTTTGTTTTTCACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGAAAAAAACACAAGGATTTGTTTGTTTGTTTGTTTTTCACTAT  100

seq1  AACAATGCAATTCTGTTTGGAAGGCGTCTATTTGTTTATTTAATTTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCAATTCTGTTTGGAAGGCGTCTATTTGTTTATTTAATTTTACA  150

seq1  TCTTGGTGGGACAGGTTGATGCCTCAGGTAAAGGGGAGTTGCTTAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGGGACAGGTTGATGCCTCAGGTAAAGGGGAGTTGCTTAAAGAT  200

seq1  GAATTGCATATTTGTGAAGCTACCTATGTATATGATGTGATATATTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCATATTTGTGAAGCTACCTATGTATATGATGTGATATATTTCAA  250

seq1  TGTAGTTTGGATATATTTGGAGCAACTGGGGAAGCTTCATGTGCTGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTGGATATATTTGGAGCAACTGGGGAAGCTTCATGTGCTGATTG  300

seq1  ATCTTATGAACAAAAAAAGGAGTAATGGAATCTCTTTCATGTGTCATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATGAACAAAAAAAGGAGTAATGGAATCTCTTTCATGTGTCATTTG  350

seq1  ACAATTTTAAAGTTCATTTATAACCTTACCTGATTCAAACTAGAGATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTAAAGTTCATTTATAACCTTACCTGATTCAAACTAGAGATGGT  400

seq1  ATCACAGCTTTGATGTAAAATTATATGCTTCATGAAAGTGTGGTTTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCTTTGATGTAAAATTATATGCTTCATGAAAGTGTGGTTTGTTG  450

seq1  GGAGGCTGGTAATGGATTTCTCACCTTTCTGCATGCTTTGTGAGTACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGGTAATGGATTTCTCACCTTTCTGCATGCTTTGTGAGTACAGG  500

seq1  CACTTGCTTCTTTTGATCCAGGCCATATTTCTGTGGATGCTTGCAGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCTTCTTTTGATCCAGGCCATATTTCTGTGGATGCTTGCAGAATA  550

seq1  AAATCCTCTGGAAGACAGAGGTTAGCACTTTCCTTTGAGCAGGGGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCTGGAAGACAGAGGTTAGCACTTTCCTTTGAGCAGGGGGCAGG  600

seq1  TCTGTTTACTTGCTACAATAAAGCAAGCCAAATGTTCCTATCGCATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTACTTGCTACAATAAAGCAAGCCAAATGTTCCTATCGCATGGAA  650

seq1  AGGTCAAACAGGATTTTGTGCTGTGCATTATAAAGAACTCTGGTTTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAACAGGATTTTGTGCTGTGCATTATAAAGAACTCTGGTTTTCTG  700

seq1  AACTTGGCATTCCCTGGAGGCCATGCAAATGTGCTGCCCATGAGACTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCATTCCCTGGAGGCCATGCAAATGTGCTGCCCATGAGACTGCC  750

seq1  AAAGGGCAGTCTGTGTCTCAAGAGTAAACAGTACAAATTTGCTGGAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAGTCTGTGTCTCAAGAGTAAACAGTACAAATTTGCTGGAGTCC  800

seq1  ATGAAGGTGTGGCAGGCTCACTTCTTAATCTGCAGAGTAAAAGTTTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTGTGGCAGGCTCACTTCTTAATCTGCAGAGTAAAAGTTTCAGG  850

seq1  CCTTTGCAGTTGCTGACAAGCCTCAGGCACACAGTCTGCAATAGAAATGT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTTTGCAGTTGCTGACAAGCCTCACGCACACAGTCTGCAATAGAAATGT  900

seq1  GGAATATGAATGCTGGCTAATGTGGTCATTGTGAAATTAGTGGGGTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATGAATGCTGGCTAATGTGGTCATTGTGAAATTAGTGGGGTTTTG  950

seq1  TTTGGTGGTGT  961
      |||||||||||
seq2  TTTGGTGGTGT  961