BAC Information

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BAC

Clone NameB6Ng01-169D07
Chromosome6 (Build37)
Map Location 73,197,312 - 73,305,200
singlet/doubletdoublet
Overlap geneSuclg1
Upstream geneSftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6
Downstream geneOlfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169D07.bB6Ng01-169D07.g
ACCDH960245DH960246
length1,2721,107
definitionDH960245|Mus musculus domesticus DNA, BAC clone: B6Ng01-169D07, 5' end.DH960246|Mus musculus domesticus DNA, BAC clone: B6Ng01-169D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,197,312 - 73,198,603)(73,304,062 - 73,305,200)
sequence
gaattcaaactggctgctatccactactcacttggtccaatcagcataat
gttgtcaatatagtgtacacacacacatatttacaatctatactatatgt
tatatatactatgtattacacattttgttaaataaatgaaacaaaatgct
taattattaagtaaagattcagtgaaaaatttcctccttaaaaccattgt
tcgcgggctggagagatggctcagaggttaagaacactggttgttctttc
agaggtccatgagttcaattcccagccaccacatggtggctcacaaccaa
gtgtaatgagatctggtgccctcttctggctcacagacatactgcagaca
gaacactgtacataataagtaaataaataaatctttaaaaaaatgttcac
actggacctatttggaaagcactgatatttaactttaccacaagggcagg
atctacaagacaagtacacatgagaatggtgcgaattataatgacgacct
tactgagctaaaataactttattgattatactgataaggaatcttaggaa
cgcggttttagacaagaaacgtggtgctttggctcaaggacttgctaagg
ttttaaaagagtggagtgaataatttgttccaattgggcacaaatcctat
ttgatctcgagttgtagtccttaggattttagaaagaggcataattagca
ttagtaaataattagcattagtcgaaggcagtgcgccagtttgtttaata
aagagattcctgcttcaggaaactgtcagctaaggggctttttaatttta
agtatttggtcacttttccttttttcttttgccggccactagtgcggata
atttccggaaccgtacagggaggacaagaggagtacaatcttctctgtaa
caggtcagaaaaaacaaagtgcaggatcacggtctggcacatagcattgc
tgccggcgcctcccctcagcgtttgtcacggcttttcctgggcgcccacg
ccggagtttaaatcgcttcaacccctccctttcagcacgctgcttactcg
gaaaaaaaatacatttcccacacaccacgcgccggccgggcctctcatgg
gctgtcccacacattggcggttatgttatggttaccaaggcccactctat
taaagaaacgagccatgttttgcttttccacggtcactctctgtcgtcac
attacgttactgtgagaagactcgagagcgttaagtattcaggctactct
ctctagaaactttctgcccgag
gaattccatggttatgaaaactacctctcactcacagttccttaataagg
tgctgaaaattgtggtctgctgaacttagtatggaaactaaagaagagga
tggtgggaagtaggagccaagatggacatcctatggtagagacaaagaga
agagtcaggaaagtggacagttcagcatttccagcctggccatataggag
caggaggatagagaactcccagaaggacatttctaagaacaatgaaaaag
caatgcttttgcctggaaaaaaaaaaaaacatgccagtagggatggacag
tttgaaaacagtgttaagacataggccaagaagaaggtgggaggggaaaa
ctaattattaatttctggaagcaacacatttttattgaaaatcattttca
tacaatgtatttggatcacagtttcccctcccagatcttcccagatcctc
cccacatctgtccccattacaactctatgcctaccatctttctcccctga
aagtaatacatctgagtaaaaatgtaatcacaaaatgctagtaggatggt
ctattggcaaacattctcaatactttcaataaaaattgggtgcaatttca
catggaaaacgggcaatgatgagacaaaaaatgatgtattatgtaagaat
tttaactttcctttttgtgataagaagccaccaaaaaagtgagaaaatga
taaaatgtcaagaatgttgaggtagggtcttatcttaggaaaatggccct
agggaaatacagttaggcctccagctctgctgagcagttgttatccttcc
catcagcctttgcagtctttgttaggctaacttaagcgcagtgctcacaa
accaggccaggatcatctgttgtccaggcacgagatgatatgaagataaa
gccatggttcttcaccataagataccttagggcttaaatccatacacatt
tcatatgcatagactccaaactcaagttcatttctgaaatgagactcatc
gcttcagtcattctccactgcgtggctgggtagcacagttctacagatgg
taaaccacataaaatgggaaaacagaaatgggctgccagagtagcctact
tggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_73197312_73198603
seq2: B6Ng01-169D07.b_46_1317

seq1  GAATTCAAACTGGCTGCTATCCACTACTCACTTGGTCCAATCAGCATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGGCTGCTATCCACTACTCACTTGGTCCAATCAGCATAAT  50

seq1  GTTGTCAATATAGTGTACACACACACATATTTACAATCTATACTATATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAATATAGTGTACACACACACATATTTACAATCTATACTATATGT  100

seq1  TATATATACTATGTATTACACATTTTGTTAAATAAATGAAACAAAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACTATGTATTACACATTTTGTTAAATAAATGAAACAAAATGCT  150

seq1  TAATTATTAAGTAAAGATTCAGTGAAAAATTTCCTCCTTAAAACCATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTAAGTAAAGATTCAGTGAAAAATTTCCTCCTTAAAACCATTGT  200

seq1  TCGCGGGCTGGAGAGATGGCTCAGAGGTTAAGAACACTGGTTGTTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGGGCTGGAGAGATGGCTCAGAGGTTAAGAACACTGGTTGTTCTTTC  250

seq1  AGAGGTCCATGAGTTCAATTCCCAGCCACCACATGGTGGCTCACAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCATGAGTTCAATTCCCAGCCACCACATGGTGGCTCACAACCAA  300

seq1  GTGTAATGAGATCTGGTGCCCTCTTCTGGCTCACAGACATACTGCAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGAGATCTGGTGCCCTCTTCTGGCTCACAGACATACTGCAGACA  350

seq1  GAACACTGTACATAATAAGTAAATAAATAAATCTTTAAAAAAATGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGTACATAATAAGTAAATAAATAAATCTTTAAAAAAATGTTCAC  400

seq1  ACTGGACCTATTTGGAAAGCACTGATATTTAACTTTACCACAAGGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACCTATTTGGAAAGCACTGATATTTAACTTTACCACAAGGGCAGG  450

seq1  ATCTACAAGACAAGTACACATGAGAATGGTGCGAATTATAATGACGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAGACAAGTACACATGAGAATGGTGCGAATTATAATGACGACCT  500

seq1  TACTGAGCTAAAATAACTTTATTGATTATACTGATAAGGAATCTTAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCTAAAATAACTTTATTGATTATACTGATAAGGAATCTTAGGAA  550

seq1  CGCGGTTTTAGACAAGAAACGTGGTGCTTTGGCTCAAGGACTTGCTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGTTTTAGACAAGAAACGTGGTGCTTTGGCTCAAGGACTTGCTAAGG  600

seq1  TTTTAAAAGAGTGGAGTGAATAATTTGTTCCAATTGGGCACAAATCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGAGTGGAGTGAATAATTTGTTCCAATTGGGCACAAATCCTAT  650

seq1  TTGATCTCGAGTTGTAGTCCTTAGGATTTTAGAAAGAGGCATAATTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCGAGTTGTAGTCCTTAGGATTTTAGAAAGAGGCATAATTAGCA  700

seq1  TTAGTAAATAATTAGCATTAGTCGAAGGCAGTGCGCCAGTTTGTTTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAATAATTAGCATTAGTCGAAGGCAGTGCGCCAGTTTGTTTAATA  750

seq1  AAGAGATTCCTGCTTCAGGAAACTGTCAGCTAAGGGGCTTTTTAATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTCCTGCTTCAGGAAACTGTCAGCTAAGGGGCTTTTTAATTTTA  800

seq1  AGTATTTGGTCACTTTTCCTTTTTTCTTTTGCCGGCCACTAGTGCGGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGGTCACTTTTCCTTTTTTCTTTTGCCGGCCACTAGTGCGGATA  850

seq1  ATTTCCGGAACCGTACAGGGAGGACAAGAGGAGTACAATCTTCTCTGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGGAACCGTACAGGGAGGACAAGAGGAGTACAATCTTCTCTGTAA  900

seq1  CAGGTCAGAAAAAAACAAAGTGCAGGATCACGGTCTGGCACATAGCATTG  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAG-AAAAAACAAAGTGCAGGATCACGGTCTGGCACATAGCATTG  949

seq1  CTGCCGGCGCCTCCCCTCAGCGTTTGTCACGGCTTTTCCTGGGCGCCCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGGCGCCTCCCCTCAGCGTTTGTCACGGCTTTTCCTGGGCGCCCAC  999

seq1  GCCGGAGTTTAAATCGCTTCCAACCCCTTCCCTTTCAGCACGCTGCTTAC  1050
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  GCCGGAGTTTAAATCGCTT-CAACCCC-TCCCTTTCAGCACGCTGCTTAC  1047

seq1  TCGGAAAAAAAATACATTTCCCACAACACCACGCGCCGGCCGGGCCTCTC  1100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCGGAAAAAAAATACATTTCCCAC-ACACCACGCGCCGGCCGGGCCTCTC  1096

seq1  ATGGGCTGTCCCACACATT-GCCGTTATGTTTATGGTTACCCAAGCCCAC  1149
      ||||||||||||||||||| || |||||| ||||||||||| | ||||||
seq2  ATGGGCTGTCCCACACATTGGCGGTTATG-TTATGGTTACCAAGGCCCAC  1145

seq1  ATCTACTAAAGAACAGAGCTATTGTTTGCTTTTCAAACGTCATCCTTCTT  1199
       |||| |||||||  |||| ||  |||||||||| |  ||||    ||| 
seq2  -TCTATTAAAGAAACGAGCCATGTTTTGCTTTTCCACGGTCA---CTCTC  1191

seq1  GTTCTTTTCCACTTGTAACGTTCACTGTTTGAGAAGAGACTCCGAGGAGC  1249
        || |   |||   | ||||| ||||  |||||  ||||| ||| ||||
seq2  TGTCGT---CAC--ATTACGTT-ACTG--TGAGA--AGACT-CGA-GAGC  1229

seq1  GTAAGATATTCAGGCTACTC-CTCTAGACACCTTTCTGCGCGAG  1292
      || |  |||||||||||||| ||||||| | |||||||| ||||
seq2  GTTAAGTATTCAGGCTACTCTCTCTAGA-AACTTTCTGCCCGAG  1272

seq1: chr6_73304062_73305200
seq2: B6Ng01-169D07.g_68_1174 (reverse)

seq1  TTTTCCTATGTAGGCTACTTCCTTTGCCAGCCCCATTTTCTCTGTTTTCC  50
      |||||| | ||||||||    || || ||| ||||||   ||||||||||
seq2  TTTTCC-AAGTAGGCTA----CTCTGGCAG-CCCATT---TCTGTTTTCC  41

seq1  CATTTTTTAATGTGGTCTACCATCTGTAGAACTGTGCTACCCAGGCTCAC  100
      ||||||   ||||||| |||||||||||||||||||||||||||   |||
seq2  CATTTT---ATGTGGTTTACCATCTGTAGAACTGTGCTACCCAG--CCAC  86

seq1  GGCCAGTGGAGAATGGACCTGGAAGCGGATGGAGTCCTTCCAATTTCAGA  150
      |  ||||||||||| |||   ||||| ||| |||||  ||  ||||||||
seq2  G--CAGTGGAGAAT-GAC--TGAAGC-GAT-GAGTC--TC--ATTTCAGA  125

seq1  AATTGGAACTTGAGTTTGGGGTTCTATTGCATATTGAAATGTGTATGGAT  200
      |||  |||||||||||||| | |||| |||||| ||||||||||||||||
seq2  AAT--GAACTTGAGTTTGGAG-TCTA-TGCATA-TGAAATGTGTATGGAT  170

seq1  TTAAGCCCTAAGGTATCTTTATGGTGAAGAACCATGGCTTTATCTTCATA  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAAGCCCTAAGGTATC-TTATGGTGAAGAACCATGGCTTTATCTTCATA  219

seq1  TCATCTCGTGCCTGGACAACAGATGATCCTGGCCTGGTTTGTGAGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCATCTCGTGCCTGGACAACAGATGATCCTGGCCTGGTTTGTGAGCA-CT  268

seq1  GCGCTTAAGTTAGCCTAACAAAGACTGCAAAGGCTGATGGGAAGGATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTAAGTTAGCCTAACAAAGACTGCAAAGGCTGATGGGAAGGATAAC  318

seq1  AACTGCTCAGCAGAGCTGGAGGCCTAACTGTATTTCCCTAGGGCCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCAGCAGAGCTGGAGGCCTAACTGTATTTCCCTAGGGCCATTTT  368

seq1  CCTAAGATAAGACCCTACCTCAACATTCTTGACATTTTATCATTTTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATAAGACCCTACCTCAACATTCTTGACATTTTATCATTTTCTCA  418

seq1  CTTTTTTGGTGGCTTCTTATCACAAAAAGGAAAGTTAAAATTCTTACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGGTGGCTTCTTATCACAAAAAGGAAAGTTAAAATTCTTACATA  468

seq1  ATACATCATTTTTTGTCTCATCATTGCCCGTTTTCCATGTGAAATTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCATTTTTTGTCTCATCATTGCCCGTTTTCCATGTGAAATTGCAC  518

seq1  CCAATTTTTATTGAAAGTATTGAGAATGTTTGCCAATAGACCATCCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTATTGAAAGTATTGAGAATGTTTGCCAATAGACCATCCTACT  568

seq1  AGCATTTTGTGATTACATTTTTACTCAGATGTATTACTTTCAGGGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTGTGATTACATTTTTACTCAGATGTATTACTTTCAGGGGAGAA  618

seq1  AGATGGTAGGCATAGAGTTGTAATGGGGACAGATGTGGGGAGGATCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTAGGCATAGAGTTGTAATGGGGACAGATGTGGGGAGGATCTGGG  668

seq1  AAGATCTGGGAGGGGAAACTGTGATCCAAATACATTGTATGAAAATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGGGAGGGGAAACTGTGATCCAAATACATTGTATGAAAATGATT  718

seq1  TTCAATAAAAATGTGTTGCTTCCAGAAATTAATAATTAGTTTTCCCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAAAATGTGTTGCTTCCAGAAATTAATAATTAGTTTTCCCCTCC  768

seq1  CACCTTCTTCTTGGCCTATGTCTTAACACTGTTTTCAAACTGTCCATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTTCTTGGCCTATGTCTTAACACTGTTTTCAAACTGTCCATCCC  818

seq1  TACTGGCATGTTTTTTTTTTTTTCCAGGCAAAAGCATTGCTTTTTCATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCATGTTTTTTTTTTTTTCCAGGCAAAAGCATTGCTTTTTCATTG  868

seq1  TTCTTAGAAATGTCCTTCTGGGAGTTCTCTATCCTCCTGCTCCTATATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAAATGTCCTTCTGGGAGTTCTCTATCCTCCTGCTCCTATATGG  918

seq1  CCAGGCTGGAAATGCTGAACTGTCCACTTTCCTGACTCTTCTCTTTGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGAAATGCTGAACTGTCCACTTTCCTGACTCTTCTCTTTGTCT  968

seq1  CTACCATAGGATGTCCATCTTGGCTCCTACTTCCCACCATCCTCTTCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATAGGATGTCCATCTTGGCTCCTACTTCCCACCATCCTCTTCTTT  1018

seq1  AGTTTCCATACTAAGTTCAGCAGACCACAATTTTCAGCACCTTATTAAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATACTAAGTTCAGCAGACCACAATTTTCAGCACCTTATTAAGG  1068

seq1  AACTGTGAGTGAGAGGTAGTTTTCATAACCATGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAGTGAGAGGTAGTTTTCATAACCATGGAATTC  1107