BAC Information

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BAC

Clone NameB6Ng01-169N06
Chromosome6 (Build37)
Map Location 139,796,116 - 139,914,720
singlet/doubletdoublet
Overlap genePik3c2g
Upstream geneEG668196, EG632971, LOC100043898
Downstream genePlcz1, Capza3, LOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169N06.bB6Ng01-169N06.g
ACCDH960699DH960700
length1,1661,074
definitionDH960699|Mus musculus domesticus DNA, BAC clone: B6Ng01-169N06, 5' end.DH960700|Mus musculus domesticus DNA, BAC clone: B6Ng01-169N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,796,116 - 139,797,298)(139,913,641 - 139,914,720)
sequence
gaattctttaaagatataaagacttgccatcttcctctgaacccggcact
gtgcataaaaggaattgatcgggatgtaagccaatttacttaattgttga
ataggccatttcatttttcattctttagttcatcaaatatgttacacact
aactcaaaaatgaatattgcaactactttaagaaaaataatttaacccca
ttcacacagaagagtaaacactaatcctgtagtataatttgttggtttag
aaataaacacagtttattaaaatataaaagagaacaaaggtctttctcac
actgaagggatctgttttactactttgggagcttgaattggtgactccat
atgtgaaacttttccatagccctgtgagttaataagggacagaccagctg
gcagagctggttacaatttcgtgcctattaataatctgtgtataacatgt
gtattacattaatatatttagctagccatctcccattttgattcaattta
atattcatcagtgtccagatatcagtatgttatattatatattttgtgat
ttttaaccatgtctgtaaagcctttcctagtatttccaaactcaggactt
cctgatcctctgtcacgtggtacttcctcaatcgatcacctctctgactt
agaatctctttctcctttgttccaaccaaactttattattcaccttctca
gaaatgctagagtagaaagacactaatagggaaaatgattgatgagtgag
atttaaaagtgaagaggttaagcaatcatgcattagcagtaaatgatact
gaagtcaagtcatgagacaacaaacacaatggttagagaaaatccgtcta
gtagcagtataaatggaaatggattgctaaagacttggacaccataatct
ctatgactttgctactctcaaggcccttacaaactttttctgacatgctt
cacaacatatgtggggtagggaggaatacaagacactaagtagtcctata
aattgacatgtatcatatgggataaaatttgaaacattactaatgcttta
aattgtgtgttttcagtgtggtggcattaattgatcaatgatagctagaa
ccatgatgttaaagtgttccagtagatgaaaaaatgaatgacacagatct
tacattttgcctcctc
gaattcctcccctgtcccacagagaagacagacgacagagctttcaaaat
gatacccaggaggaggagagtggcacactttcaagatgtgggtcctggaa
aggtctggctcaggaactctgtgaattgcaccaatcaattccaaaaggaa
gattttcaacaaaacacatcaataacttatattcacattcacgcggatct
gtcttcgcctgtgagcctttgcatgttgggaataagaatgctaacctata
gcatcgtgaaaaggaattagtgagagactaattcaagctttatgccgaat
attcaacactcataaatcaactttaaatattcatcaaatacacaaatagg
ggatgttttttgcacttggctgaggaatacgcttcctgacaaaagcgatt
tcctcaagcacccagaaagtaggaagtctcaggaagtcactttgaaattt
attattattttcctgtggcaaatgtaaacattaggatttctaaacctgtg
ttccttggtagatttttaacctgttcttgaataatgcaaatgattttctt
aaagtgaccaaagctaaaatattggtgttatatagctcttaattgttctg
tgcacctatagtgattaaaaacaaaaaaaaccaaaaaaacaaaaaccaaa
aaaaaccaaaaaaactcctttaccatgcaacaagtagttgttgggtcatg
ctggagaagaagataggtagatgtattctttgtggtgttttcatcaaatg
acataatatgtctttatataagtagaataaggaatatttctcttaattaa
gtttatagtgtattcatccatttttaccgataagcgtgaggcaaattttc
agtcagcctgacacatgcagaatttgtggggcttgggaattggcacctca
aatagaaagacttgagttgtaatgactatctataactcacacataggcat
tcactggacattattgacacaggggctaataaataagctaaagtacattt
catgattgcagtggggagagtatagcagagatcagcgagtctgtggtggt
gggaagcatattatgcggggtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_139796116_139797298
seq2: B6Ng01-169N06.b_48_1213

seq1  GAATTCTTTAAAGATATAAAGACTTGCCATCTTCCTCTGAACCCGGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAGATATAAAGACTTGCCATCTTCCTCTGAACCCGGCACT  50

seq1  GTGCATAAAAGGAATTGATCGGGATGTAAGCCAATTTACTTAATTGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAAAAGGAATTGATCGGGATGTAAGCCAATTTACTTAATTGTTGA  100

seq1  ATAGGCCATTTCATTTTTCATTCTTTAGTTCATCAAATATGTTACACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCATTTCATTTTTCATTCTTTAGTTCATCAAATATGTTACACACT  150

seq1  AACTCAAAAATGAATATTGCAACTACTTTAAGAAAAATAATTTAACCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAAATGAATATTGCAACTACTTTAAGAAAAATAATTTAACCCCA  200

seq1  TTCACACAGAAGAGTAAACACTAATCCTGTAGTATAATTTGTTGGTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAGAAGAGTAAACACTAATCCTGTAGTATAATTTGTTGGTTTAG  250

seq1  AAATAAACACAGTTTATTAAAATATAAAAGAGAACAAAGGTCTTTCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACACAGTTTATTAAAATATAAAAGAGAACAAAGGTCTTTCTCAC  300

seq1  ACTGAAGGGATCTGTTTTACTACTTTGGGAGCTTGAATTGGTGACTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGGATCTGTTTTACTACTTTGGGAGCTTGAATTGGTGACTCCAT  350

seq1  ATGTGAAACTTTTCCATAGCCCTGTGAGTTAATAAGGGACAGACCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAACTTTTCCATAGCCCTGTGAGTTAATAAGGGACAGACCAGCTG  400

seq1  GCAGAGCTGGTTACAATTTCGTGCCTATTAATAATCTGTGTATAACATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTGGTTACAATTTCGTGCCTATTAATAATCTGTGTATAACATGT  450

seq1  GTATTACATTAATATATTTAGCTAGCCATCTCCCATTTTGATTCAATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACATTAATATATTTAGCTAGCCATCTCCCATTTTGATTCAATTTA  500

seq1  ATATTCATCAGTGTCCAGATATCAGTATGTTATATTATATATTTTGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATCAGTGTCCAGATATCAGTATGTTATATTATATATTTTGTGAT  550

seq1  TTTTAACCATGTCTGTAAAGCCTTTCCTAGTATTTCCAAACTCAGGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCATGTCTGTAAAGCCTTTCCTAGTATTTCCAAACTCAGGACTT  600

seq1  CCTGATCCTCTGTCACGTGGTACTTCCTCAATCGATCACCTCTCTGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCCTCTGTCACGTGGTACTTCCTCAATCGATCACCTCTCTGACTT  650

seq1  AGAATCTCTTTCTCCTTTGTTCCAACCAAACTTTATTATTCACCTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTTTCTCCTTTGTTCCAACCAAACTTTATTATTCACCTTCTCA  700

seq1  GAAATGCTAGAGTAGAAAGACACTAATAGGGAAAATGATTGATGAGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTAGAGTAGAAAGACACTAATAGGGAAAATGATTGATGAGTGAG  750

seq1  ATTTAAAAGTGAAGAGGTTAAGCAATCATGCATTAGCAGTAAATGATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAGTGAAGAGGTTAAGCAATCATGCATTAGCAGTAAATGATACT  800

seq1  GAAGTCAAGTCATGAGACAACAAACACAATGGTTAGAGAAAATCCGTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAAGTCATGAGACAACAAACACAATGGTTAGAGAAAATCCGTCTA  850

seq1  GTAGCAGTATAAATGGAAATGGATTGCTAAAGACTTGGACACCATAATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGTATAAATGGAAATGGATTGCTAAAGACTTGGACACCATAATCT  900

seq1  CTATGACTTTGCTACTCTCAAGGCCCCTTACAAAC-TTTTCTGACATGCT  949
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  CTATGACTTTGCTACTCTCAAGG-CCCTTACAAACTTTTTCTGACATGCT  949

seq1  TCACAAACATATGTGGGGGTAGGGAGGAATAACAAGACACTAAGTAAGTC  999
      |||| ||||||||| ||||||||||||||| |||||||||||||| ||||
seq2  TCAC-AACATATGT-GGGGTAGGGAGGAAT-ACAAGACACTAAGT-AGTC  995

seq1  CTATAAATTGACATGTATCCATATGGGATAAAATTTGAAACATTACTAAT  1049
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTATAAATTGACATGTAT-CATATGGGATAAAATTTGAAACATTACTAAT  1044

seq1  GCTTTAAAAATTGTGTGTTTTCAAGTGTTGGGTGCATTTATTGATCAATG  1099
      |||||  ||||||||||||||| |||| |||  ||||| |||||||||||
seq2  GCTTT--AAATTGTGTGTTTTC-AGTG-TGGTGGCATTAATTGATCAATG  1090

seq1  TATAGCTAGAAGCTATGAATGTTAGAGGTGTTTACAGTAGAAAGAAAAAT  1149
       |||||||||| | ||| |||||| | ||| || |||||||   ||||||
seq2  -ATAGCTAGAA-CCATG-ATGTTA-AAGTG-TTCCAGTAGATGAAAAAAT  1135

seq1  AGAAATGACGACAGATCTTACATTTTGCTTCCTC  1183
         |||||| |||||||||||||||||| |||||
seq2  --GAATGAC-ACAGATCTTACATTTTGCCTCCTC  1166

seq1: chr6_139913641_139914720
seq2: B6Ng01-169N06.g_67_1140 (reverse)

seq1  CTCACCCCGCCCTTAATATGCTTCCCACCACCACAGACTCGCTGATCTCC  50
      |||||||||  | ||||||||||||||||||||||||||||||||||| |
seq2  CTCACCCCG--CATAATATGCTTCCCACCACCACAGACTCGCTGATCT-C  47

seq1  TGCTTATTACTCT-CCCACTGCAATCATGAAAATGTACTTTAGCCTTATT  99
      ||||   |||||| ||||||||||||||| ||||||||||||| ||||||
seq2  TGCT--ATACTCTCCCCACTGCAATCATG-AAATGTACTTTAG-CTTATT  93

seq1  TATTAGCCCCTTGTGTCAAATAATGTCCAGTGAATGCCTATGTGTGAGTT  149
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TATTAGCCCC-TGTGTC-AATAATGTCCAGTGAATGCCTATGTGTGAGTT  141

seq1  AATAGATAGTCATTAC-ACTCAAGTCTTTCTATTTGAGGTGCCAATT-CC  197
       ||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  -ATAGATAGTCATTACAACTCAAGTCTTTCTATTTGAGGTGCCAATTCCC  190

seq1  AAG-CCCACAAATTCTGCATGTGTCAGGCTGACTGAAGATTTGCCTCACG  246
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGCCCCACAAATTCTGCATGTGTCAGGCTGACTGAAAATTTGCCTCACG  240

seq1  CTTATCGGTAAAAATGGATGAATACACTATAAACTTAATTAAGAGAAATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCGGTAAAAATGGATGAATACACTATAAACTTAATTAAGAGAAATA  290

seq1  TTCCTTATTCTACTTATATAAAGACATATTATGTCATTTGATGAAAACAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATTCTACTTATATAAAGACATATTATGTCATTTGATGAAAACAC  340

seq1  CACAAAGAATACATCTACCTATCTTCTTCTCCAGCATGACCCAACAACTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAATACATCTACCTATCTTCTTCTCCAGCATGACCCAACAACTA  390

seq1  CTTGTTGCATGGTAAAGGAGTTTTTTTGGTTTTTTTTGGTTTTTGTTTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGCATGGTAAAGGAGTTTTTTTGGTTTTTTTTGGTTTTTGTTTTT  440

seq1  TTGGTTTTTTTTGTTTTTAATCACTATAGGTGCACAGAACAATTAAGAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTTTGTTTTTAATCACTATAGGTGCACAGAACAATTAAGAGC  490

seq1  TATATAACACCAATATTTTAGCTTTGGTCACTTTAAGAAAATCATTTGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACACCAATATTTTAGCTTTGGTCACTTTAAGAAAATCATTTGCA  540

seq1  TTATTCAAGAACAGGTTAAAAATCTACCAAGGAACACAGGTTTAGAAATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAGAACAGGTTAAAAATCTACCAAGGAACACAGGTTTAGAAATC  590

seq1  CTAATGTTTACATTTGCCACAGGAAAATAATAATAAATTTCAAAGTGACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTTACATTTGCCACAGGAAAATAATAATAAATTTCAAAGTGACT  640

seq1  TCCTGAGACTTCCTACTTTCTGGGTGCTTGAGGAAATCGCTTTTGTCAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGACTTCCTACTTTCTGGGTGCTTGAGGAAATCGCTTTTGTCAGG  690

seq1  AAGCGTATTCCTCAGCCAAGTGCAAAAAACATCCCCTATTTGTGTATTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTATTCCTCAGCCAAGTGCAAAAAACATCCCCTATTTGTGTATTTG  740

seq1  ATGAATATTTAAAGTTGATTTATGAGTGTTGAATATTCGGCATAAAGCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATTTAAAGTTGATTTATGAGTGTTGAATATTCGGCATAAAGCTT  790

seq1  GAATTAGTCTCTCACTAATTCCTTTTCACGATGCTATAGGTTAGCATTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTCTCTCACTAATTCCTTTTCACGATGCTATAGGTTAGCATTCT  840

seq1  TATTCCCAACATGCAAAGGCTCACAGGCGAAGACAGATCCGCGTGAATGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCAACATGCAAAGGCTCACAGGCGAAGACAGATCCGCGTGAATGT  890

seq1  GAATATAAGTTATTGATGTGTTTTGTTGAAAATCTTCCTTTTGGAATTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAGTTATTGATGTGTTTTGTTGAAAATCTTCCTTTTGGAATTGA  940

seq1  TTGGTGCAATTCACAGAGTTCCTGAGCCAGACCTTTCCAGGACCCACATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCAATTCACAGAGTTCCTGAGCCAGACCTTTCCAGGACCCACATC  990

seq1  TTGAAAGTGTGCCACTCTCCTCCTCCTGGGTATCATTTTGAAAGCTCTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTGTGCCACTCTCCTCCTCCTGGGTATCATTTTGAAAGCTCTGT  1040

seq1  CGTCTGTCTTCTCTGTGGGACAGGGGAGGAATTC  1080
      ||||||||||||||||||||||||||||||||||
seq2  CGTCTGTCTTCTCTGTGGGACAGGGGAGGAATTC  1074