BAC Information

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BAC

Clone NameB6Ng01-169P15
Chromosome6 (Build37)
Map Location 38,651,448 - 38,652,537
singlet/doubletsinglet
Overlap geneHipk2
Upstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180
Downstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169P15.bB6Ng01-169P15.g
ACCDH960808DH960809
length1,0781,176
definitionDH960808|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P15, 5' end.DH960809|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctcaggaggtgcctgggaattggtgtattgaacttcccaggag
tccagaggcatcctggtgccagtgaagcagactatgtttaggactcagtg
cccagactaagccagttagattctcagagctcagccaaaccctggacctt
tgaggacgagctatgaggtcaaacagaaagctgcacgtctaggctgtcag
cagagcttccctgtctctctaggcaccaggagcttgtgtgctggggttga
gctcctccctgcttggtgacagaccatcaacagatctctgctttagtcca
gcatcctagaaactttgtagggatgatgttagaagaacaatcagttcaag
ggattacagcttgtgcctgccaaatggcaatgttagaaagagcccagtgt
cctacctatggcattattgtggtgacaagataagctgatcaaactgtcag
agtggaagagcctggatgtaggaagggcctgaaggggtcaagagatccag
gtagtgatttctcttactggggtgaatgaggtggcaatgggcctgcaatg
agccttcactatcccaatgcagcttctgtgggcctgggggacagatgcgc
agtcatgcactgtgtgcatgcaaatgtgcttaggcacaggtaatctgtac
agcacaccctgagaggccactgagaacctctgtgctcttgcagttctttt
gtttggtaagcacagtagctacgtgtttctaggaacactacttatattag
agctataaccgtggggttcattccacatgcacaccgccttactgagcagc
tcagcagcctcatgttatttcttagtcaggcactgtgggcccacactctg
cttctcaccccgagtactgactctgaaaaccagcatcaactccccggact
gtgggcagctgggacatgaagatgagcagcagtgggtgcagggcagatgt
ctgaagagagtagctggggtgcctgaaagagcctgtgagcatacccaccc
cacatgggtcaccccagtcagacaatagggagaaggagttagccccttca
tttctcttctggcaggtgcctgagtaaa
gaattcctgacccttaggacctcagaatatgaccttgtttagaaagagag
ctttacggagattactgacttactggttccctctgtcaaaaattagccct
tcttggtgttcagaagtagcttccttagggtggaccatcagtatgacaga
ggtccttatcaacgggagaaatctaaacacatgtatatacagggaggaca
ggacacaaggaaaaagatagctatgtaaaagccaattggggaggcttgaa
agacctcattccctcccttcttggaccaagcctgaccatgcattgattgt
ggtcctctggcctgtagaactgtgagatgctattttgtcatcagccagcc
accagctgcagtgctttgttaaggaggtgtactggctggttttgggtgtc
aacttgacacaggctggagttatcaccaagaaaggagcttcagttgggga
aatgcctccatgagatccagctgtggggcattttctcaattaatgatcaa
gggggaaaggccccttgtgggttggaccatctctgggctgttagtcttgg
ttctataagagagaaggctgagcaagccaggggaagcaagccagtaaaga
acatccctccatggtctctgcatcagctcctgcttcctgccctgcttgag
ttccagtcctgacttcctttggtgatgaacagcaatgtggaagtgtaagc
tgaataaaccctttcctccccaacttgcttcttggtcatgatgtttgtgc
aggactagaaaccctgactaagaaaggagctgtaccagacgaatatgcct
atgttagcagccactggctttttgttagttggacaggcttggtgatccat
ccctgtaattctagaaaactgagagggaatttcgagtgtaggttatcctg
ggcacacagtgagatcctgtctcaagcaacacatgccattgttctgcatt
tgtttgttttcaataagtctcatcattgcactctagttgaaaggggtttt
ggagttgttttcacaaacttgtttcctttcctgttgctgcatattattgc
agagactgggaaactgtttctttctcagtatcatccgattgtctggtact
ctggatgatacttatcatattcagtgtctaacaatggtaggaagtgcctg
tcccctgcgtcatcttcccagtgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38651448_38652537
seq2: B6Ng01-169P15.b_46_1123

seq1  GAATTCTCTCAGGAGGTGCCTGGGAATTGGTGTATTGAACTTCCCAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGGAGGTGCCTGGGAATTGGTGTATTGAACTTCCCAGGAG  50

seq1  TCCAGAGGCATCCTGGTGCCAGTGAAGCAGACTATGTTTAGGACTCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGCATCCTGGTGCCAGTGAAGCAGACTATGTTTAGGACTCAGTG  100

seq1  CCCAGACTAAGCCAGTTAGATTCTCAGAGCTCAGCCAAACCCTGGACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTAAGCCAGTTAGATTCTCAGAGCTCAGCCAAACCCTGGACCTT  150

seq1  TGAGGACGAGCTATGAGGTCAAACAGAAAGCTGCACGTCTAGGCTGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACGAGCTATGAGGTCAAACAGAAAGCTGCACGTCTAGGCTGTCAG  200

seq1  CAGAGCTTCCCTGTCTCTCTAGGCACCAGGAGCTTGTGTGCTGGGGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTCCCTGTCTCTCTAGGCACCAGGAGCTTGTGTGCTGGGGTTGA  250

seq1  GCTCCTCCCTGCTTGGTGACAGACCATCAACAGATCTCTGCTTTAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCCTGCTTGGTGACAGACCATCAACAGATCTCTGCTTTAGTCCA  300

seq1  GCATCCTAGAAACTTTGTAGGGATGATGTTAGAAGAACAATCAGTTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTAGAAACTTTGTAGGGATGATGTTAGAAGAACAATCAGTTCAAG  350

seq1  GGATTACAGCTTGTGCCTGCCAAATGGCAATGTTAGAAAGAGCCCAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACAGCTTGTGCCTGCCAAATGGCAATGTTAGAAAGAGCCCAGTGT  400

seq1  CCTACCTATGGCATTATTGTGGTGACAAGATAAGCTGATCAAACTGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTATGGCATTATTGTGGTGACAAGATAAGCTGATCAAACTGTCAG  450

seq1  AGTGGAAGAGCCTGGATGTAGGAAGGGCCTGAAGGGGTCAAGAGATCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGAGCCTGGATGTAGGAAGGGCCTGAAGGGGTCAAGAGATCCAG  500

seq1  GTAGTGATTTCTCTTACTGGGGTGAATGAGGTGGCAATGGGCCTGCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATTTCTCTTACTGGGGTGAATGAGGTGGCAATGGGCCTGCAATG  550

seq1  AGCCTTCACTATCCCAATGCAGCTTCTGTGGGCCTGGGGGACAGATGCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCACTATCCCAATGCAGCTTCTGTGGGCCTGGGGGACAGATGCGC  600

seq1  AGTCATGCACTGTGTGCATGCAAATGTGCTTAGGCACAGGTAATCTGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGCACTGTGTGCATGCAAATGTGCTTAGGCACAGGTAATCTGTAC  650

seq1  AGCACACCCTGAGAGGCCACTGAGAACCTCTGTGCTCTTGCAGTTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACCCTGAGAGGCCACTGAGAACCTCTGTGCTCTTGCAGTTCTTTT  700

seq1  GTTTGGTAAGCACAGTAGCTACGTGTTTCTAGGAACACTACTTATATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTAAGCACAGTAGCTACGTGTTTCTAGGAACACTACTTATATTAG  750

seq1  AGCTATAACCGTGGGGTTCATTCCACATGCACACCGCCTTACTGAGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAACCGTGGGGTTCATTCCACATGCACACCGCCTTACTGAGCAGC  800

seq1  TCAGCAGCCTCATGTTATTTCTTAGTCAGGGCACTGTGGGCCCACACTCT  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAGCAGCCTCATGTTATTTCTTAGTCA-GGCACTGTGGGCCCACACTCT  849

seq1  GCTTCTCACCCCGAGTACTGACTCTGAAAACCAGCATCAACTCCCCGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCACCCCGAGTACTGACTCTGAAAACCAGCATCAACTCCCCGGAC  899

seq1  TGTGGGCAGCTGGGACATGAAGATGAGCAGCAGTGGGTGCAGGGCAGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAGCTGGGACATGAAGATGAGCAGCAGTGGGTGCAGGGCAGATG  949

seq1  TCTGAAGAGAGTAGCTGGGGTGCCTGAAAGAGGCCTGTGAGCATACCCAC  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTGAAGAGAGTAGCTGGGGTGCCTGAAAGA-GCCTGTGAGCATACCCAC  998

seq1  CCCACATGGGTCACCCCCAGTCAGACAATAAGGGAGAAAGGAGTCTAAGC  1050
      ||||||||||||| ||||||||||||||| |||||| ||||||  | |||
seq2  CCCACATGGGTCA-CCCCAGTCAGACAAT-AGGGAG-AAGGAG--TTAGC  1043

seq1  CCCTTTCCATTTCCTCTCTGGCAGAGTTGCCTGGTGTAAA  1090
      |||||  ||||||   ||||||  || ||||| | |||||
seq2  CCCTT--CATTTCTCTTCTGGC--AGGTGCCT-GAGTAAA  1078