BAC Information

Click to search

BAC

Clone NameB6Ng01-170E04
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,441 - 18,835,968155,940,257 - 155,941,432
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170E04.bB6Ng01-170E04.g
ACCDH961019DH961020
length9731,167
definitionDH961019|Mus musculus domesticus DNA, BAC clone: B6Ng01-170E04, 5' end.DH961020|Mus musculus domesticus DNA, BAC clone: B6Ng01-170E04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,441 - 18,835,968)(155,940,257 - 155,941,432)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcaggaactttggagtttca
ttaggtcccacttacaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttgat
ccacttagatttgaccgtagtacaaggagataggaatggaccgattcgca
ttcttctacatgataacaaccagttgtgacagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtctggcatggtgattccgccagaagttctttt
atccttgagaagactttttgctatcctaggttttttgttattccagatga
atttgcaaattgctccttccaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttccttaatttctttcttcagagatttgaagtttttatcatac
agatcttcacttccttagttagagtcacaccaagatattttatattattt
gtgactattgagaaggtgtgttt
gaattctcagtttggtttctgaactctggaaaatgtaattatttcagtat
aagctacagcaagaaactggtgttgtaataacgcatgggactggccactg
taataaatgggcttcccttatgacctcggtggttatcagtatcaggttat
cctggttttgaccatgaacagttgtgagcacagtgccatgagggtacctt
cctttaagacctctgtgacataagcaaagaaaacaacaaccaagaaagcc
aatggctgttcccaattattgattttcccagtttcctgggacacagagaa
agcaaatgtatcttgtgagtaattgtgagaccattgggaaccaggcgtgc
tctggaaagtccaggttaggtcgcacgtgagcacaaacactgcctgatgt
tgctctttaagtggttgcaaatccacagactcctctccttgcagaaatgc
ttaccaggaccacagagtttcctgtttttgcctcttcccccaattgccca
agttaggtttaatttgattattctttctagtggcatccacggagggcaag
ctttgctgacatccaggctcattctttctacggaggagcagctgtgtgat
ctaagctttgcctcagtttgaggctcacccacacatgtttcccaatccct
tcctgtgtaatcacatcaggccttttccctccgaggctgagacaggctga
tctgcctctcatctcaagaaccaaaacgcctgccctttcccaaagataac
ctcagagataatgacatggaattccaattttatattttagtagatttcag
ctattattttatttaggagactttgtttgttggtttgtttttgttttttg
agacaggatttctctgtatagccctgactgtcctggaactcactctgtaa
accaggctggcctcaaactcagaaatccgcctggctctgcctcccaagtg
ctggggtaaaggcgtgcgccaccactgcctggtctatttaggaaacactt
atctctttgcagaggactctttacactgaggaagtcttctggatggagtg
tttggggtttacctaagtgactggaattagaaaacctacaggtctatttc
agcctctcttgggagaagctatctagtggtgtgaccgattaatggattat
atacatttctttaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835441_18835968
seq2: B6Ng01-170E04.b_45_572 (reverse)

seq1  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50

seq1  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGT  100

seq1  CACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATC  150
      ||||||||||||||||| |||||||||||| |||||| ||||| | ||||
seq2  CACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGGTCCATTCCTATC  150

seq1  TCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200
      ||| ||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  TCCTTGTACTACGGTCAAATCTAAGTGGATCAAGGAACTCCACATAAAAC  200

seq1  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250

seq1  ATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGT  299
      ||||||| ||||||||| ||||||||||||||||||||||| ||||||||
seq2  ATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGT  300

seq1  GAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  349
       || | |||||| |  || ||||||||||||||||||||||||| |||||
seq2  AAGATCGAGAATTG-TAAGTGGGACCTAATGAAACTCCAAAGTTCCTGCA  349

seq1  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  399

seq1  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  449

seq1  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATA  499
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAA  499

seq1  AATGGGGCTCAGAACTGAACAAAGAATTC  528
      |||||||||||||||||||||||||||||
seq2  AATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr1_155940257_155941432
seq2: B6Ng01-170E04.g_70_1236

seq1  GAATTCTCAGTTTGGTTTCTGAACTCTGGAAAATGTAATTATTTCAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTTGGTTTCTGAACTCTGGAAAATGTAATTATTTCAGTAT  50

seq1  AAGCTACAGCAAGAAACTGGTGTTGTAATAACGCATGGGACTGGCCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACAGCAAGAAACTGGTGTTGTAATAACGCATGGGACTGGCCACTG  100

seq1  TAATAAATGGGCTTCCCTTATGACCTCGGTGGTTATCAGTATCAGGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGGGCTTCCCTTATGACCTCGGTGGTTATCAGTATCAGGTTAT  150

seq1  CCTGGTTTTGACCATGAACAGTTGTGAGCACAGTGCCATGAGGGTACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTTGACCATGAACAGTTGTGAGCACAGTGCCATGAGGGTACCTT  200

seq1  CCTTTAAGACCTCTGTGACATAAGCAAAGAAAACAACAACCAAGAAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAGACCTCTGTGACATAAGCAAAGAAAACAACAACCAAGAAAGCC  250

seq1  AATGGCTGTTCCCAATTATTGATTTTCCCAGTTTCCTGGGACACAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGTTCCCAATTATTGATTTTCCCAGTTTCCTGGGACACAGAGAA  300

seq1  AGCAAATGTATCTTGTGAGTAATTGTGAGACCATTGGGAACCAGGCGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGTATCTTGTGAGTAATTGTGAGACCATTGGGAACCAGGCGTGC  350

seq1  TCTGGAAAGTCCAGGTTAGGTCGCACGTGAGCACAAACACTGCCTGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAGTCCAGGTTAGGTCGCACGTGAGCACAAACACTGCCTGATGT  400

seq1  TGCTCTTTAAGTGGTTGCAAATCCACAGACTCCTCTCCTTGCAGAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTAAGTGGTTGCAAATCCACAGACTCCTCTCCTTGCAGAAATGC  450

seq1  TTACCAGGACCACAGAGTTTCCTGTTTTTGCCTCTTCCCCCAATTGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGGACCACAGAGTTTCCTGTTTTTGCCTCTTCCCCCAATTGCCCA  500

seq1  AGTTAGGTTTAATTTGATTATTCTTTCTAGTGGCATCCACGGAGGGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGTTTAATTTGATTATTCTTTCTAGTGGCATCCACGGAGGGCAAG  550

seq1  CTTTGCTGACATCCAGGCTCATTCTTTCTACGGAGGAGCAGCTGTGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGACATCCAGGCTCATTCTTTCTACGGAGGAGCAGCTGTGTGAT  600

seq1  CTAAGCTTTGCCTCAGTTTGAGGCTCACCCACACATGTTTCCCAATCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTTTGCCTCAGTTTGAGGCTCACCCACACATGTTTCCCAATCCCT  650

seq1  TCCTGTGTAATCACATCAGGCCTTTTCCCTCCGAGGCTGAGACAGGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTAATCACATCAGGCCTTTTCCCTCCGAGGCTGAGACAGGCTGA  700

seq1  TCTGCCTCTCATCTCAAGAACCAAAACGCCTGCCCTTTCCCAAAGATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTCATCTCAAGAACCAAAACGCCTGCCCTTTCCCAAAGATAAC  750

seq1  CTCAGAGATAATGACATGGAATTCCAATTTTATATTTTAGTAGATTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGATAATGACATGGAATTCCAATTTTATATTTTAGTAGATTTCAG  800

seq1  CTATTATTTTATTTAGGAGACTTTGTTTGTTGGTTTGTTTTTGTTTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTTTATTTAGGAGACTTTGTTTGTTGGTTTGTTTTTGTTTTTTG  850

seq1  AGACAGGATTTCTCTGTATAGCCCTGACTGTCCTGGAACTCACTCTGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATTTCTCTGTATAGCCCTGACTGTCCTGGAACTCACTCTGTAA  900

seq1  ACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGGCTCTGCCTCCCAAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGGCTCTGCCTCCCAAGTG  950

seq1  CTGGGGTTAAAGGCGTGCGCCACCACTGCCTGGTCTATTTAGGATACACT  1000
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGGGG-TAAAGGCGTGCGCCACCACTGCCTGGTCTATTTAGGAAACACT  999

seq1  TATCTC-TTGCAGAAGGACTC-TTACACCTGAGGACAGTCTCCTGGAATG  1048
      |||||| |||||| ||||||| ||||| ||||||| ||||| |||| |||
seq2  TATCTCTTTGCAG-AGGACTCTTTACA-CTGAGGA-AGTCTTCTGG-ATG  1045

seq1  AAGTGTTTGGGTTTTAACTAAGTGACTGGATATCAGAAACACTACA-GTC  1097
       |||||||||| |||| ||||||||||||| || |||||  ||||| |||
seq2  GAGTGTTTGGGGTTTACCTAAGTGACTGGA-ATTAGAAAACCTACAGGTC  1094

seq1  ATTTTCAGCCT-TCTTGGGAAGAGCTA-CTAGGGGGTTGTGACACAAATT  1145
        ||||||||| ||||||||  ||||| |||| ||  ||||||  |   |
seq2  TATTTCAGCCTCTCTTGGGAGAAGCTATCTAGTGG--TGTGACCGA---T  1139

seq1  TAATGGATTATAATTACCATTTTTTTAAAAA  1176
      ||||||||||||  || ||||| ||||||||
seq2  TAATGGATTATA--TA-CATTTCTTTAAAAA  1167