BAC Information

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BAC

Clone NameB6Ng01-170H09
Chromosome6 (Build37)
Map Location 141,927,677 - 141,928,495
singlet/doubletsinglet
Overlap geneEG625716
Upstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1
Downstream geneSlco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170H09.bB6Ng01-170H09.g
ACCDH961167DH961168
length984820
definitionDH961167|Mus musculus domesticus DNA, BAC clone: B6Ng01-170H09, 5' end.DH961168|Mus musculus domesticus DNA, BAC clone: B6Ng01-170H09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaatccatctggccctgggctttatttagttgggagct
tcttaatgacttcttccttatgggatatggtccttagatagtttacctgc
tcttgatttaactttggtatgtgatatctgtctaaaaaaacatccatttc
atttagattttccagttttgaatataggcctttgtagtaggatctgatgg
tttatttgaatttcctccatttctgttgttatgtctcccttttcatctct
gaatttgttaatatggatactgcctctcagccctttagttagtttggcta
ggggtttaatctaccttggtgattctcttaaagtaccagcttctggttga
ttctttgtattgttttcttcgttctacttggttgatttcagctctgagtt
tgactatttcctgtcttctactcctcttgggtgtgtttgcttatttttat
tctagaactctcaggtgtgctgttaagttgctagtgcaagatctctccag
tttcttttccagggcacttaagtgatatgaactttcctcttagcactgct
ttcatggtatctcataagtttgggtatgatgtgtcaacattttcattaaa
tttcagaaagtctgtaatttctttttatttctttcctgaccaagttattg
agtaaagagttgttcagtttctacatgtaagtgtgctttctgtagttttt
gctgttcttgaagaccagccttaggccatagtgatctgataggatgaatg
gtattatttcaatcttcttgtatccgttgagagttgttttgtgacaaatt
atatggttgattttggagaaggtaccatgaggtgctgagaagtagttgca
acctttttttttttcttttggggtgaatgtttgtagaatactgtaagtcc
attgttcataactccttagtcaccgtgtctttgttagttcggtcatgaat
ggcatggtgagatgtgtgttgttttacttttttt
gaattccaggacagcaggggctgtacaaagagaagccctgttttgaaaag
caaaatgaaaaacaaacaaaaggaatagagaaaatgatcacagctactat
agatgcttaaaacgtcagatataacagtgtagacatatgattgaagcttt
tgttctaagtggataatagatttaaaaatatctttctgccactgttataa
aagaccttgacaaatcaaggtaaggaagaagagttactctgctcacaatt
ccgggacacagtccaccatcctgtggatatcaaggccactagaaatttga
tgcacatagtagatatgtagacaaaactagtcctgtcctttcacactgtt
agtgagtatagcaggcagggatgggatctcagccacccctagccataaac
acttaagacagggcaatagctagtacttttccttcccagaattttccagt
acaatgcccacccagaaacagaggagaaggattagttctcacctagagac
aggcaaaattacttttggctgaaaaagtttaaggaacaaggaggagtttt
tgctgtagcaaataagatttctccctaggttacagggcaagcaagggagc
cagagtttaagattaacctggcatgactcctggtggtgggtggtgaaaga
acctatatttctttcactggagtgttagtgacaagtgcctgcataaaact
gagagtggtggaatccatgtaattactgcttttttgtcccagcagcacat
gaacctaccacacaactaactagatgcaccctgatcttcaagggtgagct
tcctggggtctcgagggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_141927677_141928495
seq2: B6Ng01-170H09.g_69_888

seq1  GAATTCCAGGACAGCAGGGGCTGTACAAAGAGAAGCCCTGTTTTGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCAGGGGCTGTACAAAGAGAAGCCCTGTTTTGAAAAG  50

seq1  CAAAATGAAAAACAAACAAAAGGAATAGAGAAAATGATCACAGCTACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAAAACAAACAAAAGGAATAGAGAAAATGATCACAGCTACTAT  100

seq1  AGATGCTTAAAACGTCAGATATAACAGTGTAGACATATGATTGAAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTAAAACGTCAGATATAACAGTGTAGACATATGATTGAAGCTTT  150

seq1  TGTTCTAAGTGGATAATAGATTTAAAAATATCTTTCTGCCACTGTTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAGTGGATAATAGATTTAAAAATATCTTTCTGCCACTGTTATAA  200

seq1  AAGACCTTGACAAATCAAGGTAAGGAAGAAGAGTTACTCTGCTCACAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTGACAAATCAAGGTAAGGAAGAAGAGTTACTCTGCTCACAATT  250

seq1  CCGGGACACAGTCCACCATCCTGTGGATATCAAGGCCACTAGAAATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGACACAGTCCACCATCCTGTGGATATCAAGGCCACTAGAAATTTGA  300

seq1  TGCACATAGTAGATATGTAGACAAAACTAGTCCTGTCCTTTCACACTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAGTAGATATGTAGACAAAACTAGTCCTGTCCTTTCACACTGTT  350

seq1  AGTGAGTATAGCAGGCAGGGATGGGATCTCAGCCACCCCTAGCCATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTATAGCAGGCAGGGATGGGATCTCAGCCACCCCTAGCCATAAAC  400

seq1  ACTTAAGACAGGGCAATAGCTAGTACTTTTCCTTCCCAGAATTTTCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGACAGGGCAATAGCTAGTACTTTTCCTTCCCAGAATTTTCCAGT  450

seq1  ACAATGCCCACCCAGAAACAGAGGAGAAGGATTAGTTCTCACCTAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCCCACCCAGAAACAGAGGAGAAGGATTAGTTCTCACCTAGAGAC  500

seq1  AGGCAAAATTACTTTTGGCTGAAAAAGTTTAAGGAACAAGGAGGAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAATTACTTTTGGCTGAAAAAGTTTAAGGAACAAGGAGGAGTTTT  550

seq1  TGCTGTAGCAAATAAGATTTCTCCCTAGGTTACAGGGCAAGCAAGGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAGCAAATAAGATTTCTCCCTAGGTTACAGGGCAAGCAAGGGAGC  600

seq1  CAGAGTTTAAGATTAACCTGGCATGACTCCTGGTGGTGGGTGGTGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTAAGATTAACCTGGCATGACTCCTGGTGGTGGGTGGTGAAAGA  650

seq1  ACCTATAGTTCTTTCACTGGAGTGTTAGTGACAAGTGCCTGCATAAAACT  700
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATATTTCTTTCACTGGAGTGTTAGTGACAAGTGCCTGCATAAAACT  700

seq1  GAGAGTGGTGGAATCCATGTAAGTAACTGC-TTTTTGTCCAAGCAGCAGC  749
      |||||||||||||||||||||| | ||||| ||||||||| ||||||| |
seq2  GAGAGTGGTGGAATCCATGTAA-TTACTGCTTTTTTGTCCCAGCAGCA-C  748

seq1  ATGAACCTA-CACACAACTAACTAGATGCACCCTGATCTCAAAGGGTGAG  798
      ||||||||| |||||||||||||||||||||||||||||  |||||||||
seq2  ATGAACCTACCACACAACTAACTAGATGCACCCTGATCTTCAAGGGTGAG  798

seq1  CTTCCT-GGGTCTCGAGGGTAA  819
      |||||| |||||||||||||||
seq2  CTTCCTGGGGTCTCGAGGGTAA  820