BAC Information

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BAC

Clone NameB6Ng01-170I17
Chromosome6 (Build37)
Map Location 59,468,687 - 59,643,406
singlet/doubletdoublet
Overlap genenone
Upstream geneAbcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
Downstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170I17.bB6Ng01-170I17.g
ACCDH961231DH961232
length1,090626
definitionDH961231|Mus musculus domesticus DNA, BAC clone: B6Ng01-170I17, 5' end.DH961232|Mus musculus domesticus DNA, BAC clone: B6Ng01-170I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,642,380 - 59,643,406)(59,468,687 - 59,469,311)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagtttttttctcgtcccgggtttcggcaccaattgttattag
acgcgttctcacgaccggccaggaagaacaccacagaccagaatcttctg
cggcaaagctttattcttacatcttcaggagcagagtgcaagaagcaaga
gagagagaaaagcaagagagcgagaaaagcaagagagagcgagaaaagca
agagagcgagaaaagcaagagagagcgagaagcaagagagagaaaaaacg
aaaccccgtccctcttaaggagcattctccttcgcctcggacgtgtcact
ccctgattggctgcagcccatcggccgagttgacgtcacggggaaggcag
agcacaagtagtcataaaacacccttggcacatgcgcagattatttgttt
accacttagaacacagctgtcagcgccatcttgtaacggcgaatgtgggc
gcggctcccaacagttactgatctttaatcatggatattaatattattat
catattattgcacaaattatcctgcacaactcaccatgaataatgattat
acttgaaatacattaataaacacattcatgcaacagtatgtcataaacta
catacaggggacacagctatgttgcaattaccaaaaaaatctttacttcc
atataaatttacatacccaatggtcctatcatcttcagaaagttactact
ttgatcaaaaaactgggcttcgaataggattgtggtatttgaggcaatat
gtatcaaaatataaaatctacttgggactgtaataaatgaattttccaca
taaaaacatgttatagattatcctaatcatttattaggccggtagttttc
ttttgagatattaataaggtataccatttttaatctccctttcccttaaa
atttgagtgtgtgccactttccccactatcaaattctttgcatatttttg
tcactggaatatcatcatatgcctatagttatcaaaatat
gaattcttttgtgagctagtgttctgttgcccctgaccaaagagatgaag
gcatcaaccctcttggatcatctcacttcttagtatgctcttggggttat
ccgtgcatgcatacagctcctgccattcagaaatctgctttgaattctca
gtttggggaaaacaaatcttccctggatttgttccactttctctcttatc
tttagcatcctttaaattctactttgtacatttgaattctgaaataattc
catcctattcttcacagatctctgtattcccaaataaaggatagaaggtt
tagttgtctcttgtgagactatgccggggcctagcaaacacagaagtgga
tgcccacagtcagctaatggatggatcacagggctcccaatggaggagct
agagaaagtacccaaggagctaaagggatctgtaaccctataggtggatc
aacattatgaactaaccagtaccccggagctcttgactctagctgcatat
gtatcaaaagatggcctagtcggccatcactggaaagagaggcccattgg
acacacaaactttatatgccccagaacaggggaacgccagggccaaaaag
ggggagtgggcgggtagggggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_59642380_59643406
seq2: B6Ng01-170I17.b_110_1133 (reverse)

seq1  ATATTATGATAAATATAAGCATATGATGATAAT-CAGTGACAAAAATATG  49
      ||||| |||||| |||| ||||||||||||| | ||||||||||||||||
seq2  ATATTTTGATAACTATAGGCATATGATGATATTCCAGTGACAAAAATATG  50

seq1  CAAAGAATTTGATAGTGTGG-AAGT-GCACACACTCAAATTTTTAAGGGG  97
      ||||||||||||||||| || |||| |||||||||||||||||  | |||
seq2  CAAAGAATTTGATAGTGGGGAAAGTGGCACACACTCAAATTTT--AAGGG  98

seq1  AAAGGGAGATTAAAAATGGTATAACTTATTAATATCTCAAAAGAAAACTA  147
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAGGGAGATTAAAAATGGTATACCTTATTAATATCTCAAAAGAAAACTA  148

seq1  TGCATGTGTTAATAAATGATTAGGATAATCTATAACATGTTTTTATGTTG  197
           |   |||||||||||||||||||||||||||||||||||||| ||
seq2  ---CCGGCCTAATAAATGATTAGGATAATCTATAACATGTTTTTATG-TG  194

seq1  GAAAATTCATTTATTACAGTCCCAAGTAGATTTTATATTTTGATACATAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCATTTATTACAGTCCCAAGTAGATTTTATATTTTGATACATAT  244

seq1  TGCCTCAAATACCACAATCCTATTCGAAGCCCAGTTTTTTGATCAAAGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAATACCACAATCCTATTCGAAGCCCAGTTTTTTGATCAAAGTA  294

seq1  GTAACTTTCTGAAGATGATAGGACCATTGGGTATGTAAATTTATATGGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTTCTGAAGATGATAGGACCATTGGGTATGTAAATTTATATGGAA  344

seq1  GTAAAGATTTTTTTGGTAATTGCAACATAGCTGTGTCCCCTGTATGTAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATTTTTTTGGTAATTGCAACATAGCTGTGTCCCCTGTATGTAGT  394

seq1  TTATGACATACTGTTGCATGAATGTGTTTATTAATGTATTTCAAGTATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACATACTGTTGCATGAATGTGTTTATTAATGTATTTCAAGTATAA  444

seq1  TCATTATTCATGGTGAGTTGTGCAGGATAATTTGTGCAATAATATGATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCATGGTGAGTTGTGCAGGATAATTTGTGCAATAATATGATAA  494

seq1  TAATATTAATATCCATGATTAAAGATCAGTAACTGTTGGGAGCCGCGCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAATATCCATGATTAAAGATCAGTAACTGTTGGGAGCCGCGCCC  544

seq1  ACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAAC  594

seq1  AAATAATCTGCGCATGTGCCAAGGGTGTTTTATGACTACTTGTGCTCTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTGCGCATGTGCCAAGGGTGTTTTATGACTACTTGTGCTCTGC  644

seq1  CTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTG  694

seq1  ACACGTCCGAGGCGAAGGAGAATGCTCCTTAAGAGGGACGGGGTTTCGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTCCGAGGCGAAGGAGAATGCTCCTTAAGAGGGACGGGGTTTCGTT  744

seq1  TTTTCTCTCTCTTGCTTCTCGCTCTCTCTTGCTTTTCTCGCTCTCTTGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCTCTTGCTTCTCGCTCTCTCTTGCTTTTCTCGCTCTCTTGCT  794

seq1  TTTCTCGCTCTCTCTTGCTTTTCTCGCTCTCTTGCTTTTCTCTCTCTCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCGCTCTCTCTTGCTTTTCTCGCTCTCTTGCTTTTCTCTCTCTCTT  844

seq1  GCTTCTTGCACTCTGCTCCTGAAGATGTAAGAATAAAGCTTTGCCGCAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGCACTCTGCTCCTGAAGATGTAAGAATAAAGCTTTGCCGCAGA  894

seq1  AGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAGAACGCGTCTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAGAACGCGTCTAA  944

seq1  TAACAATTGGTGCCGAAACCCGGGACGAGAAAAAAACTCGGGACTGGCGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTGGTGCCGAAACCCGGGACGAGAAAAAAACTCGGGACTGGCGC  994

seq1  AAGGAAGATCCCTCATTCCAGAACCAGAAC  1027
      ||||||||||||||||||||||||||||||
seq2  AAGGAAGATCCCTCATTCCAGAACCAGAAC  1024

seq1: chr6_59468687_59469311
seq2: B6Ng01-170I17.g_66_691

seq1  GAATTCTTTTGTGAGCTAGTGTTCTGTTGCCCCTGACCAAAGAGATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTGAGCTAGTGTTCTGTTGCCCCTGACCAAAGAGATGAAG  50

seq1  GCATCAACCCTCTTGGATCATCTCACTTCTTAGTATGCTCTTGGGGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAACCCTCTTGGATCATCTCACTTCTTAGTATGCTCTTGGGGTTAT  100

seq1  CCGTGCATGCATACAGCTCCTGCCATTCAGAAATCTGCTTTGAATTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCATGCATACAGCTCCTGCCATTCAGAAATCTGCTTTGAATTCTCA  150

seq1  GTTTGGGGAAAACAAATCTTCCCTGGATTTGTTCCACTTTCTCTCTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGAAAACAAATCTTCCCTGGATTTGTTCCACTTTCTCTCTTATC  200

seq1  TTTAGCATCCTTTAAATTCTACTTTGTACATTTGAATTCTGAAATAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATCCTTTAAATTCTACTTTGTACATTTGAATTCTGAAATAATTC  250

seq1  CATCCTATTCTTCACAGATCTCTGTATTCCCAAATAAAGGATAGAAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTATTCTTCACAGATCTCTGTATTCCCAAATAAAGGATAGAAGGTT  300

seq1  TAGTTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGA  350

seq1  TGCCCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCT  400

seq1  AGAGAAAGTACCCAAGGAGCTAAAGGGATCTGTAACCCTATAGGTGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGTACCCAAGGAGCTAAAGGGATCTGTAACCCTATAGGTGGATC  450

seq1  AACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATAT  500

seq1  GTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGG  550

seq1  ACACACAAACTTTATATGCCCCAGAACAGGGGAACGCCAGGGCCAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAACTTTATATGCCCCAGAACAGGGGAACGCCAGGGCCAAAAAG  600

seq1  GGGGAGTGGGCGGGTA-GGGGAGTGG  625
      |||||||||||||||| |||||||||
seq2  GGGGAGTGGGCGGGTAGGGGGAGTGG  626