BAC Information

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BAC

Clone NameB6Ng01-170K04
Chromosome6 (Build37)
Map Location 127,360,470 - 127,361,604
singlet/doubletsinglet
Overlap geneLOC100043848
Upstream geneLOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703
Downstream geneParp11, Efcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170K04.bB6Ng01-170K04.g
ACCDH961297DH961298
length1,1191,251
definitionDH961297|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K04, 5' end.DH961298|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagagccaggaatagggatccatccagtcggtcatctagtaggg
acacaggctgaacctgtgctcactgtgtgaccactgttcttgcctctgtg
ttcctgctgtctcgccttttccctgtattagaataaatccagagcagagc
aaagcaaacatatattctgggaggatactgagtgctacggactgttaggt
aactgcgaaggggtctcaggaaacccaactcataaacatcccgatacctt
cagtgttatccctccaaaatgctaaaagaaagagatttcattacacagtt
gagaatcaaaagtataattacagcaggtcacaatgtttgtggcatcctga
gatcccagggcagggatggatagaactcctcctgtcagatgccctgccta
ccactggggtctagccaaagcaccatgtccagagcccaaaggatggcagc
cttgtttgttgtgctcagatgaggttttcttctctcatactagggctctg
ccatggtcagagactccttcaccatccactatcctggctcagggcttggc
agctaagaatttggagcatggacagccattgcagtacattgagctccata
gagacagcgccggggcaagcgcgagctggatgagcactgggcgactctgt
gcctcgcggaggaaaatcaactaaacatgggcaaaggagatcctaagaag
ccgagaggcaaaatgtcctcatatgcattctttgtgcaaacctgctggga
ggaacacaagaagaagcacccggatgcttctgtcaacttctcagagttct
ccaagaagtgcttagagaggtggggataccatgtctgctaaagaaaaggg
gaatttgaagatatggcaaaggctgacaggctcgttatgaaagagaatga
aaacctacatctcccccaaaggggagaccaaaaagagtcaaggacccaat
gtacccagaggcctctttcggcctcttcttcttctgttctgagtaccgcc
cctatcaaagcgagcatcctggcttatctattggtggatgtgcaagaaac
tagagagatgtggaccacactgccagccgatgacaaagcaccctatggaa
agaggtgccaagctgaagg
gaattccagttttatgtttaataccgaattctttacagaatgaaataaag
tttttactggaataagatggcccattgtctgtcttaataagtttaggcaa
tcccatggcattaaatgcttgtaggcaatgatcaattacgttttttgaag
cttctcctgtatgcagagaagcaaaaagaaatcctgaacaagtatcaatg
tagacatgtatatattttagttttccaaattctgtataatgggttatatc
catttgccaaatatgattaggcataaggcctctaggattaactcctagat
gcggcactggagataaagtaatacatttaggacattgttttacgatcatt
ctcgcttgctcttttgtgatcttatgtcggagtcttagggtatggctaga
aagatgaaacctttcgtgatcacgttgggccaaagcaacccgatctgaaa
ctaaggcttctcctattagagctctgtcaatgcgatcattaccctctgcc
agaggtccaggaagaccagagtgagaccgtatgtggccaatataaaacgg
atttttccgggcgagaatgttttgtaattctgaaaataaagatcctgacg
gcgtattgaagttaaacgtaccacaggtttccagtaagggtactgactga
gcaacatataaactgtcagtaaaaatattaaaagcctcatgcacagactg
aaaaaccttcagtactgctgttaattcggcgagctgagccgagagaccag
gagtctctacgataacctgttgattactaataagatatccagctcgccct
ttagaggagccatcagtaaaaatcaatagagcatatttaaaggctgtaag
gaagtcatcttaggaatatcatatcatgcacatttaagaattttatcaac
ctatctgggggtagtggctatctagagttcttcaaaccctaattgtgcaa
gcaccaatctgtactatgctgtttcagccaagtgtcctgactcacgctgt
aaggctggacaatgataattggctcctttcaaaataagtcatgccctgcc
ttattccagtgatatcatttgagcactgcttctgaatggccaaatattta
cgtttgggagaatctctgaagtatcccattaaagaaaaatttgcctagca
atccgaagcccctgatctataaaaattacgtgcacgcgggtactattaag
tgcaaagtttctatagcttcttccatacgctgagggcgaatacctcccta
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_127360470_127361604
seq2: B6Ng01-170K04.b_45_1163

seq1  GAATTCAAGAGCCAGGAATAGGGATCCATCCAGTCGGTCATCTAGTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCCAGGAATAGGGATCCATCCAGTCGGTCATCTAGTAGGG  50

seq1  ACACAGGCTGAACCTGTGCTCACTGTGTGACCACTGTTCTTGCCTCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCTGAACCTGTGCTCACTGTGTGACCACTGTTCTTGCCTCTGTG  100

seq1  TTCCTGCTGTCTCGCCTTTTCCCTGTATTAGAATAAATCCAGAGCAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTGTCTCGCCTTTTCCCTGTATTAGAATAAATCCAGAGCAGAGC  150

seq1  AAAGCAAACATATATTCTGGGAGGATACTGAGTGCTACGGACTGTTAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAACATATATTCTGGGAGGATACTGAGTGCTACGGACTGTTAGGT  200

seq1  AACTGCGAAGGGGTCTCAGGAAACCCAACTCATAAACATCCCGATACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCGAAGGGGTCTCAGGAAACCCAACTCATAAACATCCCGATACCTT  250

seq1  CAGTGTTATCCCTCCAAAATGCTAAAAGAAAGAGATTTCATTACACAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTATCCCTCCAAAATGCTAAAAGAAAGAGATTTCATTACACAGTT  300

seq1  GAGAATCAAAAGTATAATTACAGCAGGTCACAATGTTTGTGGCATCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCAAAAGTATAATTACAGCAGGTCACAATGTTTGTGGCATCCTGA  350

seq1  GATCCCAGGGCAGGGATGGATAGAACTCCTCCTGTCAGATGCCCTGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGGGCAGGGATGGATAGAACTCCTCCTGTCAGATGCCCTGCCTA  400

seq1  CCACTGGGGTCTAGCCAAAGCACCATGTCCAGAGCCCAAAGGATGGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGGTCTAGCCAAAGCACCATGTCCAGAGCCCAAAGGATGGCAGC  450

seq1  CTTGTTTGTTGTGCTCAGATGAGGTTTTCTTCTCTCATACTAGGGCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGTTGTGCTCAGATGAGGTTTTCTTCTCTCATACTAGGGCTCTG  500

seq1  CCATGGTCAGAGACTCCTTCACCATCCACTATCCTGGCTCAGGGCTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTCAGAGACTCCTTCACCATCCACTATCCTGGCTCAGGGCTTGGC  550

seq1  AGCTAAGAATTTGGAGCATGGACAGCCATTGCAGTACATTGAGCTCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGAATTTGGAGCATGGACAGCCATTGCAGTACATTGAGCTCCATA  600

seq1  GAGACAGCGCCGGGGCAAGCGCGAGCTGGATGAGCACTGGGCGACTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCGCCGGGGCAAGCGCGAGCTGGATGAGCACTGGGCGACTCTGT  650

seq1  GCCTCGCGGAGGAAAATCAACTAAACATGGGCAAAGGAGATCCTAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGCGGAGGAAAATCAACTAAACATGGGCAAAGGAGATCCTAAGAAG  700

seq1  CCGAGAGGCAAAATGTCCTCATATGCATTCTTTGTGCAAACCTGCTGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGGCAAAATGTCCTCATATGCATTCTTTGTGCAAACCTGCTGGGA  750

seq1  GGAACACAAGAAGAAGCACCCGGATGCTTCTGTCAACTTCTCAGAGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAAGAAGAAGCACCCGGATGCTTCTGTCAACTTCTCAGAGTTCT  800

seq1  CCAAGAAGTGCTCAGAGAGGTGGGGATACCATGTCTGCTAAAGAAAAGGG  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGTGCTTAGAGAGGTGGGGATACCATGTCTGCTAAAGAAAAGGG  850

seq1  GAAATTTGAAGATATGGCAAAGGCTGACAAGGCTCGTTATGAAAGAGAAA  900
      | |||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  G-AATTTGAAGATATGGCAAAGGCTGAC-AGGCTCGTTATGAAAGAG-AA  897

seq1  TGAAAACCTACATCTCCCCCCAAAGGGGAGACCAAAAAGAAGTTCAAGGA  950
      ||||||||||||||| ||||||||||||||||||||||||   |||||||
seq2  TGAAAACCTACATCT-CCCCCAAAGGGGAGACCAAAAAGA--GTCAAGGA  944

seq1  CCCCAATGTACCCAAGAGGCCTCTTTCGGCCTTCTTCTTCTTCTGTTCTG  1000
       |||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  -CCCAATGTACCC-AGAGGCCTCTTTCGGCC-TCTTCTTCTTCTGTTCTG  991

seq1  AGTACCGCCCCCAAATCAAAGGCGAGCATCCTGGCTTATCTATTGGT-GA  1049
      |||||||||||   |||||| |||||||||||||||||||||||||| ||
seq2  AGTACCGCCCC--TATCAAA-GCGAGCATCCTGGCTTATCTATTGGTGGA  1038

seq1  TGTTGCAAAGAAACTAGGAGAGATGTGGAACAACACTG-CAGCAGATGAC  1098
      || ||| ||||||||| ||||||||||| || |||||| |||| ||||||
seq2  TG-TGC-AAGAAACTA-GAGAGATGTGG-ACCACACTGCCAGCCGATGAC  1084

seq1  -AAGCAGCCCTATGAGAAGAAGGCTGCCAAGCTGAAGG  1135
       ||||| |||||||  ||||  | ||||||||||||||
seq2  AAAGCA-CCCTATGGAAAGA--GGTGCCAAGCTGAAGG  1119