BAC Information

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BAC

Clone NameB6Ng01-170L10
Chromosome14 (Build37)6 (Build37)
Map Location 111,386,295 - 111,387,34418,835,812 - 18,836,207
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491
Downstream geneLOC100043494, Slitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170L10.bB6Ng01-170L10.g
ACCDH961355DH961356
length1,043871
definitionDH961355|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L10, 5' end.DH961356|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,386,295 - 111,387,344)(18,835,812 - 18,836,207)
sequence
gaattctaatccaataaaaataagtggctggtaacctctcaaaattatgc
ctctgatgtaccagtgagcacatttactcaataaactagtattgtatcta
gatgaatgtatacctcactgggactgctaatggcttttctcttttggcag
ccttttggaggggaagcaaccagctcaattctatctggatttcccatctg
ctgtattcaatgtatatgggagctgtcttcaactacagattcttacaatg
acattctcatgggcaacaaagacattagtttgtattgttttagagacctc
gaggacctctctgaggggaaaactattatagagaagacatattacatgtg
gtagaattttcatttaacaatttctgtatactgagatgttccttattcat
cagtgcatggaatttccattcaaactatttatatttttttattttgtaag
gttaaaattggtggcttttcatttttgttcaagtcatccatagtattcgt
cacatgtctcctctaaccacttgttgttcacctcagatctgcttaaacac
tttaattccatcactgttccactgtaaactctttaaggccctttttaaaa
aatataaaggtctctaacttctattctctttctctcttcatagtctccaa
attatacacattctcttcaatgccttcgtaaggagatatactcttttctt
ttttggttctaaaattccagtatgccagatcttacaacaaagtttcaatt
tcaacttgtgatgacatttgcgtagggtgagaaataaggaaatcatttca
cccttctacatatgggtaccctggctcacagcgccacttttgatgaaact
gtgcttacttccaatgtatatttcttccattacagaaaagatacaggaga
tgcagttgtgcactttcacttgattttatccagtttaagcagtattaata
acatgactaattactgtatttaaaccaggttctatatctgcttcacccta
cagtcttcattagcagtatagttcctttgagataattatgtat
ggggctgaggcgggaatatgaaagtgaatttaaggcaagcttgtgctata
aagtgatacttttcacagatatgatcatttagaatatatttatacaacct
ttcttgagccctttttgttataatttataaattgtagtgaaaattagaga
ttcttatttgttgggaagtgtaaaccatgggaaacagatagaagaaaaac
attcatttaaacagagaaaaagaaagtctcatttggtttcatggtattac
aggcttaagttaatatttttttttgtctctatagagttactagaaaattg
gcagaacattgaaacagagggtgtgataaggcagtgattctcaactcatg
attagtatgaaaatacagaaaatgtatggaagggttgttttctactactt
taacagcatcctcttggggagctattttccattgagacttattgcatcat
ttccataaaaacttatttcttaggaaccgccagactgatttccagagtgg
ttgtacaagcctacaatcccaccaacaatggaggagtgttcctctttctc
cacatccacgccagcatctgctgtcacctgaatttttgatcttagccatt
ctggctggtgtgaggtggaatctcaggggttgttttgatttgcatttccc
tgatgataaaggacgttgaacattttttcaggtgcttctctgccattcag
tattcctcaggtgagaattctttgttctgttctgagtcccatattttaat
ggggttttttgattttctgaagtccaccttctggagttctttatatatgt
tggatattagtcccctatctgatttaggataggtaaagatcctttcccaa
tctggtgggggtctttttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111386295_111387344
seq2: B6Ng01-170L10.b_44_1086

seq1  GAATTCTAATCCAATAAAAATAAGTGGCTGGTAACCTCTCAAAATTATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATCCAATAAAAATAAGTGGCTGGTAACCTCTCAAAATTATGC  50

seq1  CTCTGATGTACCAGTGAGCACATTTACTCAATAAACTAGTATTGTATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGTACCAGTGAGCACATTTACTCAATAAACTAGTATTGTATCTA  100

seq1  GATGAATGTATACCTCAGTGGGACTGCTAATGGCTTTTCTCTTTTGGCAG  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATGAATGTATACCTCACTGGGACTGCTAATGGCTTTTCTCTTTTGGCAG  150

seq1  CCTTTTGGAGGGGAAGCAACCAGCTCAATTCTATCTGGATTTCCCATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGAGGGGAAGCAACCAGCTCAATTCTATCTGGATTTCCCATCTG  200

seq1  CTGTATTCAATGTATATGGGAGCTGTCTTCAACTACAGATTCTTACAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCAATGTATATGGGAGCTGTCTTCAACTACAGATTCTTACAATG  250

seq1  ACATTCTCATGGGCAACAAAGACATTAGTTTGTATTGTTTTAGAGACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCATGGGCAACAAAGACATTAGTTTGTATTGTTTTAGAGACCTC  300

seq1  GAGGACCTCTCTGAGGGGAAAACTATTATAGAGAAGACATATTACATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTCTCTGAGGGGAAAACTATTATAGAGAAGACATATTACATGTG  350

seq1  GTAGAATTTTCATTTAACAATTTCTGTATACTGAGATGTTCCTTATTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTTTCATTTAACAATTTCTGTATACTGAGATGTTCCTTATTCAT  400

seq1  CAGTGCATGGAATTTCCATTCAAACTATTTATATTTTTTTATTTTGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATGGAATTTCCATTCAAACTATTTATATTTTTTTATTTTGTAAG  450

seq1  GTTAAAATTGGTGGCTTTTCATTTTTGTTCAAGTCATCCATAGTATTCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATTGGTGGCTTTTCATTTTTGTTCAAGTCATCCATAGTATTCGT  500

seq1  CACATGTCTCCTCTAACCACTTGTTGTTCACCTCAGATCTGCTTAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTCTCCTCTAACCACTTGTTGTTCACCTCAGATCTGCTTAAACAC  550

seq1  TTTAATTCCATCACTGTTCCACTGTAAACTCTTTAAGGCCCTTTTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCCATCACTGTTCCACTGTAAACTCTTTAAGGCCCTTTTTAAAA  600

seq1  AATATAAAGGTCTCTAACTTCTATTCTCTTTCTCTCTTCATAGTCTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAGGTCTCTAACTTCTATTCTCTTTCTCTCTTCATAGTCTCCAA  650

seq1  ATTATACACATTCTCTTCAATGCCTTCGTAAGGAGATATACTCTTTTC-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTATACACATTCTCTTCAATGCCTTCGTAAGGAGATATACTCTTTTCTT  700

seq1  TTTTGGTTCTAAAATTCCAGTATGCCAGATCTTACAACAAAGTTTCAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTCTAAAATTCCAGTATGCCAGATCTTACAACAAAGTTTCAATT  750

seq1  TCAACTTGTGATGACATTTGCGTAGGGTGAGAAATAAGGAAATAATTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAACTTGTGATGACATTTGCGTAGGGTGAGAAATAAGGAAATCATTTCA  800

seq1  CCCTTCTACATATGGGTA-CCTGGCTCACAGCACCACTTTTTGATGAAAC  848
      |||||||||||||||||| ||||||||||||| |||| ||||||||||||
seq2  CCCTTCTACATATGGGTACCCTGGCTCACAGCGCCAC-TTTTGATGAAAC  849

seq1  TGTGCTTACTTCAAATGTATATTTCTTCCATTACAGAAAAGATACAGGTA  898
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  TGTGCTTACTTCCAATGTATATTTCTTCCATTACAGAAAAGATACAGG-A  898

seq1  GATGCAGTTGTGCACTTTCACTTAATTTTATTCAATTTAAGCAGTATTAA  948
      ||||||||||||||||||||||| ||||||| || |||||||||||||||
seq2  GATGCAGTTGTGCACTTTCACTTGATTTTATCCAGTTTAAGCAGTATTAA  948

seq1  TTAACATGACTAATTACTGTATTTAAAACAAGGTCTCTATATCTGCTTCA  998
       ||||||||||||||||||||||| |||| |||| |||||||||||||||
seq2  -TAACATGACTAATTACTGTATTT-AAACCAGGT-TCTATATCTGCTTCA  995

seq1  CCCTACAGTCTTCATTAAGCAAGTATAGTTTCTTTGACATAATTTAATGT  1048
      |||||||||||||||| ||| ||||||||| |||||| ||||||  ||||
seq2  CCCTACAGTCTTCATT-AGC-AGTATAGTTCCTTTGAGATAATT--ATGT  1041

seq1  AT  1050
      ||
seq2  AT  1043

seq1: chr6_18835812_18836207
seq2: B6Ng01-170L10.g_550_946 (reverse)

seq1  GACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAAT  50
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  GACAAAAAGACCCCCACCAGATTGGGAAAGGATCTTTACCTATCCTAAAT  50

seq1  CAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGAC  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGATAGGGGACTAATATCCAACATATATAAAGAACTCCAGAAGGTGGAC  100

seq1  TTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCAGAACTGAACAA  150
      |||||||||||||| ||||||||||| | ||||| |||||||| ||||||
seq2  TTCAGAAAATCAAAAAACCCCATTAAAATATGGGACTCAGAACAGAACAA  150

seq1  AGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAT  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAATTCTCACCTGAGGAATACTGAATGGCAGAGAAGCACCTGAAAAAAT  200

seq1  GTTCAACATCCTTAATCATCAGGGAAATGGAAATCAAAACAA-CCCTGAG  249
      ||||||| ||||| ||||||||||||||| |||||||||||| |||||||
seq2  GTTCAACGTCCTTTATCATCAGGGAAATGCAAATCAAAACAACCCCTGAG  250

seq1  ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTCCACCTCACACCAGCCAGAATGGCTAAGATCAAAAATTCAGGTGACA  300

seq1  GCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG  350

seq1  TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTT  396
      |||||||| |||||||||||||||||||||||||| |||||||||||
seq2  TGGGATTGTAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT  397