BAC Information

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BAC

Clone NameB6Ng01-171I16
Chromosome6 (Build37)
Map Location 13,349,079 - 13,350,097
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b, Gm467, Gm725
Downstream gene1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171I16.bB6Ng01-171I16.g
ACCGA000396GA000397
length6191,046
definitionB6Ng01-171I16.b B6Ng01-171I16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctccactgcaggtgggagtgcaaacttgtacagtttgaaaatca
atatagcagtttttctgaaaactggaaatccatctacctcaagattcagc
tataccactcctcgacatatacccaaagaacattccatcctatcacaagg
acacttgctcaactgtgttcatagaagctgtctttgtaataaccagaaac
tagaaacaacctagatgtccctcaaccaaagaatagatgaagaaaatgtg
gtgtttccataatggagtattactcagctgttcaaaataatgacatcatg
aaatttgcagacaaatggaacaagaataattcaccctgaatcaaccaagc
cccagaaagacaaacatggtatgaattcacctataagcagatattagctt
taaaaaaatcagtccacagatccagagaggctatataacaaggagggcac
aaaaggatctccctgggaaggagaaagagaatagctctcgagggtggatt
tgggatgtgtggggttttgaacaggagggatcaggtagtgggagcacgga
gggagaaaaatactgggagaaaatgactggaattaggggggcgttctggg
gggtgatgtgctactattt
gaattcaatcaatggtcaggaacttcccaaagtgcccttgggttggaggg
tgtggttaggctaaggttctgaccagttccggctaggagaaagccgacac
caaggaatagcttgcaacctgagagtcaaggaggagaaacagacttagca
gcggacactggaggaatcccaaggaaatcctctgtccccagtgaagggta
ttgttctctctgttccttgggagctttagtagagccatgtgggtgcctgg
ctctatgtgctgggtgttgggagaggagctcctttttttttttttttttt
tttttttttttttttttttttttaccagggggtctcttttattggttgca
ttagcctgtttcaaggcaaatgtcagggagcttagctagttggatggaat
gtccatatattatgaaaagctgaaaatgaaccctcgatcacattgatgca
aaatctacttacataactaagtcctgggccataaataggaaagaagtaaa
gagttagcccaggcatcttgtaggcttgatgctagccttccttacaacat
gagttctagctgtgttcacctaacaacaatgccactactataagaaaaat
gggtttgctggactcaaaaagtgctgggttaaaaggacatcccccaggat
cagatgggtctcaagaacataaatttggtattttttaaaagcaaacaaac
aaacttgaaacttggtactaaatttagcaatggcagttcagaaagcacag
cagcttttaccaagggcttagtattaaagcttttggctggtctctacctg
ataaaaaacttagttcaccaggaaagatgaataacattctgggagccccc
ccatctaccccacgaagaagaatgcctacatggtacttaaaggccttatt
tgtgataattttaaagaaacacaacttaagctcgtccattgaaaaacaga
atgtgagtgtaaggctcaagaagtcctgagaactgcttaaaactcctctt
tctaaattagtggtgggtcctaacgaagagaattccacatttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_13349079_13350097
seq2: B6Ng01-171I16.g_65_1110 (reverse)

seq1  TTTTAAATGTG--ATT-TCTTCTTTAG--CCCA-CACTTATTTAGAAA-A  43
      |||||||||||  ||| ||||| ||||  |||| |||| ||||||||| |
seq2  TTTTAAATGTGGAATTCTCTTCGTTAGGACCCACCACTAATTTAGAAAGA  50

seq1  GCAGTTTTAA-CTG-TCTCAGGACTCTTTGA-CTTTACACTCACA-TCTG  89
      | |||||||| | | ||||||||||  |||| | ||||||||||| ||||
seq2  GGAGTTTTAAGCAGTTCTCAGGACTTCTTGAGCCTTACACTCACATTCTG  100

seq1  TTTTTCAATGGACTGGCTT-AGTTGTG-TTCTTTAAA--TATCACAAAT-  134
      |||||||||||||  |||| ||||||| |||||||||  |||||||||| 
seq2  TTTTTCAATGGACGAGCTTAAGTTGTGTTTCTTTAAAATTATCACAAATA  150

seq1  AGGCCTTTAAGTACCATGTA-GCA-TCTTC-TCGTTGGGTAGCT-GGGTG  180
      |||||||||||||||||||| ||| ||||| |||| |||||| | ||| |
seq2  AGGCCTTTAAGTACCATGTAGGCATTCTTCTTCGTGGGGTAGATGGGGGG  200

seq1  GCTCCCAG-ATGTTATTCATC-TTCCTGCTGAACTATG-TCTTTATCAGC  227
      |||||||| |||||||||||| |||||| ||||||| | | |||||||| 
seq2  GCTCCCAGAATGTTATTCATCTTTCCTGGTGAACTAAGTTTTTTATCAGG  250

seq1  TAGAGACCAGCC-AAAGCTTTAATCATTAGCCCTT-GTTAAAGCTGCTGT  275
      |||||||||||| |||||||||||  | ||||||| || |||||||||||
seq2  TAGAGACCAGCCAAAAGCTTTAATACTAAGCCCTTGGTAAAAGCTGCTGT  300

seq1  GCTTTCTGAACTGCCATTGCTAAATTTAGTA-CAAGTTTCAAGTTTGTTT  324
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTTTCTGAACTGCCATTGCTAAATTTAGTACCAAGTTTCAAGTTTGTTT  350

seq1  GTTTGCTTTTGAAAAATACC-AACTTATGTTCCTGAGACCCATCTGATCC  373
      |||||||||| ||||||||| || |||||||| |||||||||||||||||
seq2  GTTTGCTTTTAAAAAATACCAAATTTATGTTCTTGAGACCCATCTGATCC  400

seq1  TTGGGGATGTCCTTTTAACCCAGCACTTTTTGAGTCCAGCAAACCCATTC  423
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGGGGATGTCCTTTTAACCCAGCACTTTTTGAGTCCAGCAAACCCATTT  450

seq1  TTCTTATAGTAGTGGCATTGTTGTTAGGTGAACACAGCTAGAACTCATGT  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAGTAGTGGCATTGTTGTTAGGTGAACACAGCTAGAACTCATGT  500

seq1  TGTAAGGAAGGCTAGCATCAAGCCTACAAGATGCCTGTGCTAACTCTTTA  523
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTAAGGAAGGCTAGCATCAAGCCTACAAGATGCCTGGGCTAACTCTTTA  550

seq1  CTTCTTTCCTATTTATGGACCAGGACTTAGTTATGTAAGTAGATTCTGCA  573
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  CTTCTTTCCTATTTATGGCCCAGGACTTAGTTATGTAAGTAGATTTTGCA  600

seq1  TCAATGTGATCGAGCGTTCATCTTCAGCTCTTCATAATATATGGACATTC  623
      |||||||||||||| |||||| ||||||| ||||||||||||||||||||
seq2  TCAATGTGATCGAGGGTTCATTTTCAGCTTTTCATAATATATGGACATTC  650

seq1  CATCCAACTAGCTAAGCTCCCTGACATTTGCCTTGAAACAGGCTAATGCA  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAACTAGCTAAGCTCCCTGACATTTGCCTTGAAACAGGCTAATGCA  700

seq1  ACCAATAAAAGAGACACCCTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAA  723
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCAATAAAAGAGACCCCCTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAA  750

seq1  AAAAAAAAAAAAAAGGAGCTCCTCTCCCAACACCCAGCACATAGAGCCAG  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGGAGCTCCTCTCCCAACACCCAGCACATAGAGCCAG  800

seq1  GCACCCACATGGCTCTACTAAAGCTCCCAAGGAACAGAGAGAACAATACC  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCACATGGCTCTACTAAAGCTCCCAAGGAACAGAGAGAACAATACC  850

seq1  CTTCACTGGGGACAGAGGATTTCCTTGGGATTCCTCCAGTGTCCGCTGCT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGGGGACAGAGGATTTCCTTGGGATTCCTCCAGTGTCCGCTGCT  900

seq1  AAGTCTGTTTCTCCTCCTTGACTCTCAGGTTGCAAGCTATTCCTTGGTGT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTTTCTCCTCCTTGACTCTCAGGTTGCAAGCTATTCCTTGGTGT  950

seq1  CGGCTTTCTCCTAGCCGGAACTGGTCAGAACCTTAGCCTAACCACACCCT  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTTCTCCTAGCCGGAACTGGTCAGAACCTTAGCCTAACCACACCCT  1000

seq1  CCAACCCAAGGGCACTTTGGGAAGTTCCTGACCATTGATTGAATTC  1019
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCAAGGGCACTTTGGGAAGTTCCTGACCATTGATTGAATTC  1046