BAC Information

Click to search

BAC

Clone NameB6Ng01-171M19
Chromosome6 (Build37)
Map Location 107,604,882 - 107,606,011
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1, Lrrn1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171M19.bB6Ng01-171M19.g
ACCGA000585GA000586
length1,137931
definitionB6Ng01-171M19.b B6Ng01-171M19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacctttctttaaatggctcagccatatacctattactgcaggtt
agctagaaactaaaagcatccacacgaacaggactttcagtctggtaagg
atagaatctaggctgttactcgccgagcacatcaacctgtagtttctgag
tagtgttgcacttaggaatgagtcctgtgcagtgctaaaataagggatgg
cttgagtctctgtgatcttcttctatccaggcactaccaaatgactggtc
ccaagccctttccaagcagactactatcctcatactgatcccaaagtcta
ctatagtttgatgtcaaatctgagctgatcactcaatatacttactgaca
gcccaaatccattagcttttctctattcctgcatttaccgtaagacagta
ctataacatcaatccccaaaatacagttagtgaagccaaagtaagcagca
ttgcaaaggacctaactatgcacctgaccatcatgatataggataggtta
acagcaagaaaaagaaatgggttcaaaagcacagaagctatcatttagtg
gctgatagctgaaaggtctgtttagcgtctgaaaacctggatgtgaccca
gttaaccccatcttcctgtacaaaatgatgctatcagtgtctcaacacct
ctaaaatgggatgggtgtgacataaaaggtcacaaagatgttgtgatgtg
tgctgaaatctcagtaactgggaggaaggggcagtaggactatgaattca
gggtcaatatgaattatatagtgagatacaggtcaatcagtgtgtgtaag
aatacatgttacattaaaaataataaaataaaataaaactaagatatcct
ttcactctagacaattctgtgatttcagaagtattgtaaactaagaattt
cctaggttttctgattaattcagttgttttacacagagtaccccttccat
atgccctccagttttcatcactaatattgaaagccttcagaaggaatatg
taaaattgtatcagcttaagaacagtctttatttgcttattttgaaaaca
tggaatttatttttagctggtatgtgcctgggtgtgcctggtacggctgt
gcaccacacataagtgccaagtgcctgtaaaattcag

gaattctctgtttagctcggtacctcagtttttaattgggatgtgtagtt
tttttggagtctaacttggatattagccctctatcagatgtagggttagt
gaagatctgttcccaatatgtaggttgccattttgtcctattgacagagt
cctttgctttacagaagcacttcagtttcatgaggtcccatttgtcaatt
gttgatcctacagcctgagccattggtgttctttctgttcaggaagttgt
ctcctgtaccaatgagttcaaggctattctctgttttctcatctattaga
tttagtgtatctggttttatgtggagttccttgatccgcttggatttgag
aagtgtgtagtgtgataaatatgaatgaatttgcatttttctacatgtag
acctctggttagactagcactacttgttgaagttgtattttttattccac
tgtatatttttggcttctttgtcaaagatcaagtgtccataggtgtatag
gtttatttcttggtcttcaattctattctattgatctacctgtctgtctc
tgtaccaatatcatgcactttttttttaatcactgttgctctgcagtaca
gcttgaggtcagggatagtgattctcttagaagatcttctattgttgata
attgttttggctgtcctggattttttttttccaaatgaagttgacaattg
ttctttccatgtctgtgaagaattgtgttggaattttgatggggattgtg
ttgaatctatagattgttttcagtaggatggccatttttactatgttacc
actaccaatccatcaacatggaagatctttttatctttctgaagtctttc
ttcgattttcctcaagacttgaaatttcttgccaatacagattcttatat
ttttttaaattttttattagaatatttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107604882_107606011
seq2: B6Ng01-171M19.b_37_1173

seq1  GAATTCACCTTTCTTTAAATGGCTCAG-AATATACCTATTACTGCAGGTT  49
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  GAATTCACCTTTCTTTAAATGGCTCAGCCATATACCTATTACTGCAGGTT  50

seq1  AGCTAGAAACTAAAAGCATCCACACGAACAGGACTTTCAGTCTGGTAAGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAAACTAAAAGCATCCACACGAACAGGACTTTCAGTCTGGTAAGG  100

seq1  ATAGAATCTAGGCTGTTACTCGCCGAGCACATCAACCTGTAGTTTCTGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATCTAGGCTGTTACTCGCCGAGCACATCAACCTGTAGTTTCTGAG  150

seq1  TAGTGTTGCACTTAGGAATGAGTCCTGTGCAGTGCTAAAATAAGGGATGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGCACTTAGGAATGAGTCCTGTGCAGTGCTAAAATAAGGGATGG  200

seq1  CTTGAGTCTCTGTGATCTTCTTCTATCCAGGCACTACCAAATGACTGGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTCTCTGTGATCTTCTTCTATCCAGGCACTACCAAATGACTGGTC  250

seq1  CCAAGCCCTTTCCAAGCAGACTACTATCCTCATACTGATCCCAAAGTCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCTTTCCAAGCAGACTACTATCCTCATACTGATCCCAAAGTCTA  300

seq1  CTATAGTTTGATGTCAAATCTGAGCTGATCACTCAATATACTTACTGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTTTGATGTCAAATCTGAGCTGATCACTCAATATACTTACTGACA  350

seq1  GCCCAAATCCATTAGCTTTTCTCTATTCCTGCATTTACCGTAAGACAGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAATCCATTAGCTTTTCTCTATTCCTGCATTTACCGTAAGACAGTA  400

seq1  CTATAACATCAATCCCCAAAATACAGTTAGTGAAGCCAAAGTAAGCAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACATCAATCCCCAAAATACAGTTAGTGAAGCCAAAGTAAGCAGCA  450

seq1  TTGCAAAGGACCTAACTATGCACCTGACCATCATGATATAGGATAGGTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGGACCTAACTATGCACCTGACCATCATGATATAGGATAGGTTA  500

seq1  ACAGCAAGAAAAAGAAATGGGTTCAAAAGCACAGAAGCTATCATTTAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGAAAAAGAAATGGGTTCAAAAGCACAGAAGCTATCATTTAGTG  550

seq1  GCTGATAGCTGAAAGGTCTGTTTAGCGTCTGAAAACCTGGATGTGACCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGCTGAAAGGTCTGTTTAGCGTCTGAAAACCTGGATGTGACCCA  600

seq1  GTTAACCCCATCTTCCTGTACAAAATGATGCTATCAGTGTCTCAACACCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCCCATCTTCCTGTACAAAATGATGCTATCAGTGTCTCAACACCT  650

seq1  CTAAAATGGGATGGGTGTGACATAAAAGGTCACAAAGATGTTGTGATGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGGGATGGGTGTGACATAAAAGGTCACAAAGATGTTGTGATGTG  700

seq1  TGCTGAAATCTCAGTAACTGGGAGGAAGGGGCAGTAGGACTATGAATTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAATCTCAGTAACTGGGAGGAAGGGGCAGTAGGACTATGAATTCA  750

seq1  GGGTCAATATGAATTATATAGTGAGATACAGGTCAATCAGTGTGTGTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAATATGAATTATATAGTGAGATACAGGTCAATCAGTGTGTGTAAG  800

seq1  AATACATGTTACATTAAAAATAATAAAATAAAATAAAACTAAGATATCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGTTACATTAAAAATAATAAAATAAAATAAAACTAAGATATCCT  850

seq1  TTCACTCTAGACAATTCTGTGATTTCAGAAGTATTGTAAACTAAGAATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTAGACAATTCTGTGATTTCAGAAGTATTGTAAACTAAGAATTT  900

seq1  CCTAGGTTTTCTGATTAATTCAGTTGTTTTACACAGAGTACCCC-TCCAT  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTAGGTTTTCTGATTAATTCAGTTGTTTTACACAGAGTACCCCTTCCAT  950

seq1  ATGCCCTCCAGTTTTCATCACTAATATTTGAAGCCATCAGAAGGAATATG  998
      ||||||||||||||||||||||||||||  ||||| ||||||||||||||
seq2  ATGCCCTCCAGTTTTCATCACTAATATTGAAAGCCTTCAGAAGGAATATG  1000

seq1  TAAAATTGTATCAGCCTTAAAGAACAGTCTTTATTTGCTTATTTTTAAAA  1048
      |||||||||||||||  | |||||||||||||||||||||||||| ||||
seq2  TAAAATTGTATCAGC--TTAAGAACAGTCTTTATTTGCTTATTTTGAAAA  1048

seq1  CATGGATTTTATTTTTAGCT-GTGTGTGCCTGTGTGTG-CTGGTACGCCT  1096
      |||||| ||||||||||||| || |||||||| ||||| |||||||| ||
seq2  CATGGAATTTATTTTTAGCTGGTATGTGCCTGGGTGTGCCTGGTACGGCT  1098

seq1  GTG---CACACATAAGTGC--AGTGCCTGTAGAATTCAG  1130
      |||   |||||||||||||  |||||||||| |||||||
seq2  GTGCACCACACATAAGTGCCAAGTGCCTGTAAAATTCAG  1137


| Home | SequenceCutter | Blast | Download |