BAC Information

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BAC

Clone NameB6Ng01-171O03
Chromosome6 (Build37)
Map Location 46,094,833 - 46,234,834
singlet/doubletdoublet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171O03.bB6Ng01-171O03.g
ACCGA000649GA000650
length1,104210
definitionB6Ng01-171O03.b B6Ng01-171O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,233,729 - 46,234,834)(46,094,833 - 46,095,042)
sequence
gaattcacaggacagatatttaattaatagataaagagtgacattcataa
ttagtctacttaacccagagttggtttgtccttatacagtgtctaaccct
gaagcatgaagaccctacagtatctcagggggttaatacagacataatcg
aacacagtacactatattcaagtttaaagtgtttctaaattttaagataa
atcagaattcttatttaaaatgctggagataattcttatgaaatataata
tttttataccaaacactgagaaaataatagtgaaggtgtataaataaaac
actgtatgaatagcacatctattcacatattaccagttatcagttgacca
ttgaacatttatttgtattattgagttgtaatgtcagttatgacagaaga
cacttaacaagaccctctaggttcataactaccacctcaaattctttaaa
agctattgcaaaatcctgggcaaacagaggacctacatcataaaagtgtt
ttaaaattatgtttatggtagaagtacttcattatgctccaatagttggc
actgactgtatttctaatttaatttctatgatatcttaataatacatgta
tatatacatagacatttgttacagaatataagtaagagaaaaatgtgaag
caggaaacaaaacctacctcaactatgaatacctttgatatttcagtaca
aattttcctatgtaatttaaacccttttccctaagtgtgtttacgaacaa
aatcatattctacatatatatacagaacatgtagctaaatgtgggcattc
tccaaattttctttgaaatcttgccctttgtttctatgaactggctccat
cattctggagtaacaagcatcatttatctggtccatggcaaaaaaaaaaa
aataccttctctatataggtaccaagaatttttaaaaagaaaagcctggt
ggcaccacttctgggcccctccagaattttcccttgaattcctattgcac
catggtagaaactggggatcttgcatgatttaatgatgttgacgaatggg
tcctactatatctcagctaactccctgttatggagattccttgttcagcc
acat

tatattgcagtattgtaacccttcagatttaaaacacttttcaatctagt
gtctatgaggcataaagaatccttaaacatggtggataagttaatcagaa
gatggctcttaagtttaagtttatgtttagaaatgatattagtcttaatg
tttaagaaaaagagccatttttgttggggagatgttgttttgttggttgg
ttggttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46233729_46234834
seq2: B6Ng01-171O03.b_29_1132 (reverse)

seq1  ATGTGGCTGAACAAGAAATCTCAATAACAGGAAGTTAGCCTGAAGATATA  50
      ||||||||||||||| |||||| |||||||| |||||| ||| |||||||
seq2  ATGTGGCTGAACAAGGAATCTCCATAACAGGGAGTTAG-CTG-AGATATA  48

seq1  GTAGGGACCCATCTGTCAACATCATTAAATCATTGCAAGATTCCCCAGTT  100
      ||| ||||||||  |||||||||||||||||| ||||||| |||||||||
seq2  GTA-GGACCCATTCGTCAACATCATTAAATCA-TGCAAGA-TCCCCAGTT  95

seq1  TCTACCAT-GTGCAATAGGAATTCAA-GGAAAATTCTG--AGAGCCCAG-  145
      |||||||| ||||||||||||||||| |||||||||||   | |||||| 
seq2  TCTACCATGGTGCAATAGGAATTCAAGGGAAAATTCTGGAGGGGCCCAGA  145

seq1  AGTGGTGCCACCAGGCTTTTCTTTTTAAAAATTCTTGGTACCTATATAGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGCCACCAGGCTTTTCTTTTTAAAAATTCTTGGTACCTATATAGA  195

seq1  GAAAGGTATTTTTTTTTTTTTTGCCATGGACCAGATAAATGATGCTTGTT  245
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  G-AAGGTA-TTTTTTTTTTTTTGCCATGGACCAGATAAATGATGCTTGTT  243

seq1  ACTCCAGAATGATGGAGCCAGTTCATAGAAACAAAGGGCAAGATTTCAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGAATGATGGAGCCAGTTCATAGAAACAAAGGGCAAGATTTCAAA  293

seq1  GAAAATTTGGAGAATGCCCACATTTAGCTACATGTTCTGTATATATATGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTGGAGAATGCCCACATTTAGCTACATGTTCTGTATATATATGT  343

seq1  AGAATATGATTTTGTTCGTAAACACACTTAGGGAAAAGGGTTTAAATTAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGATTTTGTTCGTAAACACACTTAGGGAAAAGGGTTTAAATTAC  393

seq1  ATAGGAAAATTTGTACTGAAATATCAAAGGTATTCATAGTTGAGGTAGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAATTTGTACTGAAATATCAAAGGTATTCATAGTTGAGGTAGGT  443

seq1  TTTGTTTCCTGCTTCACATTTTTCTCTTACTTATATTCTGTAACAAATGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCTGCTTCACATTTTTCTCTTACTTATATTCTGTAACAAATGT  493

seq1  CTATGTATATATACATGTATTATTAAGATATCATAGAAATTAAATTAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATATATACATGTATTATTAAGATATCATAGAAATTAAATTAGAA  543

seq1  ATACAGTCAGTGCCAACTATTGGAGCATAATGAAGTACTTCTACCATAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCAGTGCCAACTATTGGAGCATAATGAAGTACTTCTACCATAAA  593

seq1  CATAATTTTAAAACACTTTTATGATGTAGGTCCTCTGTTTGCCCAGGATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTAAAACACTTTTATGATGTAGGTCCTCTGTTTGCCCAGGATT  643

seq1  TTGCAATAGCTTTTAAAGAATTTGAGGTGGTAGTTATGAACCTAGAGGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATAGCTTTTAAAGAATTTGAGGTGGTAGTTATGAACCTAGAGGGT  693

seq1  CTTGTTAAGTGTCTTCTGTCATAACTGACATTACAACTCAATAATACAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAGTGTCTTCTGTCATAACTGACATTACAACTCAATAATACAAA  743

seq1  TAAATGTTCAATGGTCAACTGATAACTGGTAATATGTGAATAGATGTGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTCAATGGTCAACTGATAACTGGTAATATGTGAATAGATGTGCT  793

seq1  ATTCATACAGTGTTTTATTTATACACCTTCACTATTATTTTCTCAGTGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACAGTGTTTTATTTATACACCTTCACTATTATTTTCTCAGTGTT  843

seq1  TGGTATAAAAATATTATATTTCATAAGAATTATCTCCAGCATTTTAAATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAAAAATATTATATTTCATAAGAATTATCTCCAGCATTTTAAATA  893

seq1  AGAATTCTGATTTATCTTAAAATTTAGAAACACTTTAAACTTGAATATAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTGATTTATCTTAAAATTTAGAAACACTTTAAACTTGAATATAG  943

seq1  TGTACTGTGTTCGATTATGTCTGTATTAACCCCCTGAGATACTGTAGGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTGTTCGATTATGTCTGTATTAACCCCCTGAGATACTGTAGGGT  993

seq1  CTTCATGCTTCAGGGTTAGACACTGTATAAGGACAAACCAACTCTGGGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCTTCAGGGTTAGACACTGTATAAGGACAAACCAACTCTGGGTT  1043

seq1  AAGTAGACTAATTATGAATGTCACTCTTTATCTATTAATTAAATATCTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGACTAATTATGAATGTCACTCTTTATCTATTAATTAAATATCTGT  1093

seq1  CCTGTGAATTC  1106
      |||||||||||
seq2  CCTGTGAATTC  1104


seq1: chr6_46094833_46095042
seq2: B6Ng01-171O03.g_73_282

seq1  TATATTGCAGTATTGTAACCCTTCAGATTTAAAACACTTTTCAATCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGCAGTATTGTAACCCTTCAGATTTAAAACACTTTTCAATCTAGT  50

seq1  GTCTATGAGGCATAAAGAATCCTTAAACATGGTGGATAAGTTAATCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGAGGCATAAAGAATCCTTAAACATGGTGGATAAGTTAATCAGAA  100

seq1  GATGGCTCTTAAGTTTAAGTTTATGTTTAGAAATGATATTAGTCTTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCTTAAGTTTAAGTTTATGTTTAGAAATGATATTAGTCTTAATG  150

seq1  TTTAAGAAAAAGAGCCATTTTTGTTGGGGAGATGTTGTTTTGTTGGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAAAAGAGCCATTTTTGTTGGGGAGATGTTGTTTTGTTGGTTGG  200

seq1  TTGGTTGGTT  210
      ||||||||||
seq2  TTGGTTGGTT  210


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