BAC Information

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BAC

Clone NameB6Ng01-173C04
Chromosome6 (Build37)
Map Location 115,833,514 - 115,984,809
singlet/doubletdoublet
Overlap geneIft122, Rho, H1foo, Plxnd1, Tmcc1
Upstream geneVgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4
Downstream geneLOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173C04.bB6Ng01-173C04.g
ACCGA001567GA001568
length8831,132
definitionB6Ng01-173C04.b B6Ng01-173C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,833,514 - 115,834,396)(115,983,678 - 115,984,809)
sequence
gaattcaggtttgtggggtgggaagtggggtcaaagaaaggaagaagggt
ggccctcaggttcccatctgagcttcagccctattttatcatcaacatgg
tattttgataaagcccactgcccaccattctgggcttgattggaaactcc
tggtgtagtgtctggcagcttctcctaacccagtgccacgtgcagcctct
ctgcaggggcttccctggtggccagggtttggacttcagcatcagtatgt
ccatctgtaagccttctgctagcatcctctttaccttctccaccttttct
gaattctgaattaatgtctgtggcattttcctcactgttgtcctggctgg
gttttacagaccgtgctgcacagagcatgcttatatggctactggtgctg
ccaggtgactgtcagaccctgggcttagggaagcaggcattagtagaggc
tcagccacttggggagaattttgttccagccttaaggctgggaaacctct
ccctgtctgcattttgaattgttggcttcccacctgaggcctttctccta
ggttctggtcctgaagttccatttcatgggacagatgtataggccatgtc
ctaacccagaccattctcagctaggagtcagtgcaatagcagatcccagg
agggccaaacctgtctttgggctgattgatggttggtttgattgtaacac
tggccccagtatggctgtgtagtacttggctccctgacagcctggtcaga
gctttctttttcctgttgtttgttgagcccctagccacagtcatcagcag
gctgtgccccttataaacctctttgtcttctgttgattagagaggaacat
aatgacatcctggctgtagctgactggggacag
gaattcccataaagcctataacatcactccaggtgcatgtgtcagagaaa
tggaacttctttgtacatatgacatgaacagggatgaacttatagtacca
tgtgacagtgtcctagatatttccagattctgtatcctaaagtgcttgca
acttgctgttcagtttagtgtttcccactgtacttgatactcacaggata
tcaggatatgaagcaggggctatgcttttccactacctgtacctaattcc
taagccctgacttttgccttcatcccctaatgtggctactacagactgtt
cacttgggaagcaaagtgcccatgatcttttcatcctttttccacatgtt
aaatacacaggccacatacagaggtgcacacgcgtaatcccagcacttgg
gatgctgaggcaagaagactgtgagttccagaccagcctggttatacaca
gcaagtttcaagccagaccgggatacacagtgaaattgttacacttatct
aaaacaaaacaaatgaaaaacatttcaaaggggctggcactgtagcacag
ttggtacagcaggccttacccagaatgcatgaagcctttcaggtccatct
tcaccactacacacgcacgcacacgcgcgcgcacacacacacacacacac
acacattgtgtgtgtgaatagtagtccagtgatagatatctggggacatg
gaaacgacatcagaagggttcaaagttatcctttggttactgcgaggtaa
aaggccagcctgggctgcttgagattttgtctcaatagacaaatggaaag
ccaaatcattaaaaacaaaaatatcctaaattatgaattatgttatccta
caagggcagttgcaggctttgaagcattctctggaaaggagcctgtgatt
tctaatttggcctgatggcatctgcttggccccactgtccattcctaggg
caaatcaacagcagaagaaagcatcttgccttttatgtcaagtgaggtgt
tatgctgaatcccaaccacacagaaaggctgggaaggaggaatgaagcaa
ttaagcttgggctaactcatttaggacaagcggaattgtgagactgcctc
taaacaaaaacatggcattttgttttttacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115833514_115834396
seq2: B6Ng01-173C04.b_32_914

seq1  GAATTCAGGTTTGTGGGGTGGGAAGTGGGGTCAAAGAAAGGAAGAAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTTGTGGGGTGGGAAGTGGGGTCAAAGAAAGGAAGAAGGGT  50

seq1  GGCCCTCAGGTTCCCATCTGAGCTTCAGCCCTATTTTATCATCAACATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCAGGTTCCCATCTGAGCTTCAGCCCTATTTTATCATCAACATGG  100

seq1  TATTTTGATAAAGCCCACTGCCCACCATTCTGGGCTTGATTGGAAACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATAAAGCCCACTGCCCACCATTCTGGGCTTGATTGGAAACTCC  150

seq1  TGGTGTAGTGTCTGGCAGCTTCTCCTAACCCAGTGCCACGTGCAGCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGTGTCTGGCAGCTTCTCCTAACCCAGTGCCACGTGCAGCCTCT  200

seq1  CTGCAGGGGCTTCCCTGGTGGCCAGGGTTTGGACTTCAGCATCAGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGGCTTCCCTGGTGGCCAGGGTTTGGACTTCAGCATCAGTATGT  250

seq1  CCATCTGTAAGCCTTCTGCTAGCATCCTCTTTACCTTCTCCACCTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTAAGCCTTCTGCTAGCATCCTCTTTACCTTCTCCACCTTTTCT  300

seq1  GAATTCTGAATTAATGTCTGTGGCATTTTCCTCACTGTTGTCCTGGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAATTAATGTCTGTGGCATTTTCCTCACTGTTGTCCTGGCTGG  350

seq1  GTTTTACAGACCGTGCTGCACAGAGCATGCTTATATGGCTACTGGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAGACCGTGCTGCACAGAGCATGCTTATATGGCTACTGGTGCTG  400

seq1  CCAGGTGACTGTCAGACCCTGGGCTTAGGGAAGCAGGCATTAGTAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGACTGTCAGACCCTGGGCTTAGGGAAGCAGGCATTAGTAGAGGC  450

seq1  TCAGCCACTTGGGGAGAATTTTGTTCCAGCCTTAAGGCTGGGAAACCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACTTGGGGAGAATTTTGTTCCAGCCTTAAGGCTGGGAAACCTCT  500

seq1  CCCTGTCTGCATTTTGAATTGTTGGCTTCCCACCTGAGGCCTTTCTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTGCATTTTGAATTGTTGGCTTCCCACCTGAGGCCTTTCTCCTA  550

seq1  GGTTCTGGTCCTGAAGTTCCATTTCATGGGACAGATGTATAGGCCATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGTCCTGAAGTTCCATTTCATGGGACAGATGTATAGGCCATGTC  600

seq1  CTAACCCAGACCATTCTCAGCTAGGAGTCAGTGCAATAGCAGATCCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCAGACCATTCTCAGCTAGGAGTCAGTGCAATAGCAGATCCCAGG  650

seq1  AGGGCCAAACCTGTCTTTGGGCTGATTGATGGTTGGTTTGATTGTAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAAACCTGTCTTTGGGCTGATTGATGGTTGGTTTGATTGTAACAC  700

seq1  TGGCCCCAGTATGGCTGTGTAGTACTTGGCTCCCTGACAGCCTGGTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCAGTATGGCTGTGTAGTACTTGGCTCCCTGACAGCCTGGTCAGA  750

seq1  GCTTTCTTTTTCCTGTTGTTTGTTGAGCCCCTAGCCACAGTCATCAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTTTTCCTGTTGTTTGTTGAGCCCCTAGCCACAGTCATCAGCAG  800

seq1  GCTGTGCCCCTTAT-AACCTCTTTTGTCTTCTGTTGATTAGAGAGGAACA  849
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  GCTGTGCCCCTTATAAACCTC-TTTGTCTTCTGTTGATTAGAGAGGAACA  849

seq1  TAATGACATCCTGGCTGTAGCTGACTGGGGACAG  883
      ||||||||||||||||||||||||||||||||||
seq2  TAATGACATCCTGGCTGTAGCTGACTGGGGACAG  883

seq1: chr6_115983678_115984809
seq2: B6Ng01-173C04.g_68_1199 (reverse)

seq1  TGGTAAAAAACAAAATGCCATTGTTTTTGTTTTAGAGGCAGTCTCACAAT  50
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  TGGTAAAAAACAAAATGCCA-TGTTTTTG-TTTAGAGGCAGTCTCACAAT  48

seq1  TCTGCTTGTCCTTAAATGATGTAGCCCAAGCCTTAAATGC-TCTATCCTC  99
      || |||||||| |||||||  ||||||||| ||||| ||| ||  |||||
seq2  TCCGCTTGTCC-TAAATGAGTTAGCCCAAG-CTTAATTGCTTCATTCCTC  96

seq1  CTTTCCCAGCC-TTCTGTGT-GTTGGGATTTCAGGCATAACACCTCACTT  147
      | ||||||||| |||||||| ||||||| |||| ||||||||||||||||
seq2  C-TTCCCAGCCTTTCTGTGTGGTTGGGA-TTCA-GCATAACACCTCACTT  143

seq1  GACAT-AAAGGCAAGATGCTTTC-TCTGCTGTTGATTTTGCCCTAGGAAT  195
      ||||| ||||||||||||||||| ||||||||||| ||||||||||||||
seq2  GACATAAAAGGCAAGATGCTTTCTTCTGCTGTTGA-TTTGCCCTAGGAAT  192

seq1  GGACAGTGGGGCCAAGCAGATGCCATCAGGCCAAATTAGAAATCACAGGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTGGGGCCAAGCAGATGCCATCAGGCCAAATTAGAAATCACAGGC  242

seq1  TCC-TTCCAGAGAATGCTTCAAGCCTTGCAACTGCCCTTGTAGGATAACA  294
      ||| ||||||||||||||||||  | ||||||||||||||||||||||||
seq2  TCCTTTCCAGAGAATGCTTCAAAGCCTGCAACTGCCCTTGTAGGATAACA  292

seq1  TAATTCATAATTTAGGATA-TTTTGTTTTTAATGATTTGGCTTTCCATTT  343
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAATTCATAATTTAGGATATTTTTGTTTTTAATGATTTGGCTTTCCATTT  342

seq1  GTCTATTGAGACAAAATCTCAAGCAGCCCAGGCTGGCCTTTTACCTCGCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTGAGACAAAATCTCAAGCAGCCCAGGCTGGCCTTTTACCTCGCA  392

seq1  GTAACC-AAGGATAACTTTGAACCCTTCTGATGTCGTTTCCATGTCCCCA  442
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAAAGGATAACTTTGAACCCTTCTGATGTCGTTTCCATGTCCCCA  442

seq1  GATATCTATCACTGGACTACTATTCACACACACAATGTGTGTGTGTGTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTATCACTGGACTACTATTCACACACACAATGTGTGTGTGTGTGT  492

seq1  GTGTGTGTGCGCGCGCGTGTGCGTGCGTGTGTAGTGGTGAAGATGGACCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCGCGCGCGTGTGCGTGCGTGTGTAGTGGTGAAGATGGACCT  542

seq1  GAAAGGCTTCATGCATTCTGGGTAAGGCCTGCTGTACCAACTGTGCTACA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTTCATGCATTCTGGGTAAGGCCTGCTGTACCAACTGTGCTACA  592

seq1  GTGCCAGCCCCTTTGAAATGTTTTTCATTTGTTTTGTTTTAGATAAGTGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGCCCCTTTGAAATGTTTTTCATTTGTTTTGTTTTAGATAAGTGT  642

seq1  AACAATTTCACTGTGTATCCCGGTCTGGCTTGAAACTTGCTGTGTATAAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTCACTGTGTATCCCGGTCTGGCTTGAAACTTGCTGTGTATAAC  692

seq1  CAGGCTGGTCTGGAACTCACAGTCTTCTTGCCTCAGCATCCCAAGTGCTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGTCTGGAACTCACAGTCTTCTTGCCTCAGCATCCCAAGTGCTG  742

seq1  GGATTACGCGTGTGCACCTCTGTATGTGGCCTGTGTATTTAACATGTGGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACGCGTGTGCACCTCTGTATGTGGCCTGTGTATTTAACATGTGGA  792

seq1  AAAAGGATGAAAAGATCATGGGCACTTTGCTTCCCAAGTGAACAGTCTGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATGAAAAGATCATGGGCACTTTGCTTCCCAAGTGAACAGTCTGT  842

seq1  AGTAGCCACATTAGGGGATGAAGGCAAAAGTCAGGGCTTAGGAATTAGGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCACATTAGGGGATGAAGGCAAAAGTCAGGGCTTAGGAATTAGGT  892

seq1  ACAGGTAGTGGAAAAGCATAGCCCCTGCTTCATATCCTGATATCCTGTGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGTGGAAAAGCATAGCCCCTGCTTCATATCCTGATATCCTGTGA  942

seq1  GTATCAAGTACAGTGGGAAACACTAAACTGAACAGCAAGTTGCAAGCACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAGTACAGTGGGAAACACTAAACTGAACAGCAAGTTGCAAGCACT  992

seq1  TTAGGATACAGAATCTGGAAATATCTAGGACACTGTCACATGGTACTATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATACAGAATCTGGAAATATCTAGGACACTGTCACATGGTACTATA  1042

seq1  AGTTCATCCCTGTTCATGTCATATGTACAAAGAAGTTCCATTTCTCTGAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCCCTGTTCATGTCATATGTACAAAGAAGTTCCATTTCTCTGAC  1092

seq1  ACATGCACCTGGAGTGATGTTATAGGCTTTATGGGAATTC  1132
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACCTGGAGTGATGTTATAGGCTTTATGGGAATTC  1132