BAC Information

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BAC

Clone NameB6Ng01-173N12
Chromosome6 (Build37)
Map Location 145,014,308 - 145,123,865
singlet/doubletdoublet
Overlap geneBcat1, Lrmp, Casc1
Upstream geneSox5, 4933425H06Rik, EG665149
Downstream geneLyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173N12.bB6Ng01-173N12.g
ACCGA002085GA002086
length1,088773
definitionB6Ng01-173N12.b B6Ng01-173N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,014,308 - 145,015,407)(145,123,093 - 145,123,865)
sequence
gaattccaggccagccagctcaactagttgagactctgtttcaagtgatc
aaatgaaacaaaagtaggttttaaatgtggttgtttccgtgtcagcttta
gatcagctgaggcggttcagtacactgcctctacctcttcacggataatt
cgccttagcccaacttccacagataggccactgggacttttgcgtatttt
cttgttttggcttgtgggagtgacgagcctgctcttcgtgagctgtgcct
ataagcactctgaggtcccaggtggcagccattagacaactcacctgaat
gagtttgtcttttcctcagtcccttgccctgttaatcagggttctaggaa
acaggcctgcaaggccatgcaagtacgcacttttaactaataagccacct
ctccagagcctccctcacatttgttgtggtgaagatgcgtactgggtctg
aagtgcttccatttttattttttgggttgttttgttgtttagctttgttt
ttgagagatggtcttgggtagcttagactggcctggaactcactgtgtgg
ctccggctggcttaggccacctgatcagacagtcttcttctgcagtaatg
gttgcaatgcactcatggggtgtgctccaccacgccccagatgcaagcgc
tcctttgacctcgtgtgtcatttgtgaatcctgagctgtgtataacttgg
ggagcagaaaagacccacagaacctgagctccacagagcacagttgctgc
ctggcatcatgagagccctgggcagcaatgagcaagacacctgagcttac
aggatccactggggcttttggcaaacccattctgctatggcacaaggctg
tcccatttcctgaggaagctggctggttagccttcctggagggcgggagt
caaacacagaaaagcaggttaaccactggggtcagctgtagccggacctc
caagagtgaacttactgaagtagttccttctaaagtactttctctaaagc
cggcaagctaattttctttgctattaacaggacatagctgacttctgaag
gaaacttgaaatatatgaagttcccactttggaagcag
gaattcacgttctctttctaggagagggaacaactgtcagaagaaacaga
gcaccatacctggtcgctcctcatgttcagtggtgacagagcgcagatgc
tcaagatgcaggaagagaacgacaagttctcggaggccctcagggagggc
accgagttccactccaccttgtaccacatgatgaaggacttcgcctcccc
cgtggcaatggagagggtcaggcattcgaactgccagttcatcgactcag
tgtgctacatgctgctgtctatccgcgtcctcagctattcctagctattc
ctagcccttacagcgtgtgtaagcatggtggacccttataccgagaggaa
tcaggtatctttccagtcagccgctaaagtgatttaagagcaccaggcgt
tccagccacactgcacaaagatttgaatggtctttatttggatacatctc
aataaagtctgatgcctctcactcagaaagctcattaaaataccctaggt
ggggtcccctcccttttgtagtcccctgtgcttttgttggggaataaaaa
gatcccagctgctgaggaccctagctttgcactatagttactaaaaaaaa
gttaccaatttacaaatctcagaaggaaacgttaaaatccaagggtacat
tgagctgcacgtcagtcacactggcagtggtccatcatgcccgagtctgg
taaatggccataagatgtgttctagagacagccaggagtccccctcctgt
gtgggcgcagcctccacggctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_145014308_145015407
seq2: B6Ng01-173N12.b_44_1131

seq1  GAATTCCAGGCCAGCCAGCTCAACTAGTTGAGACTCTGTTTCAAGTGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCAGCTCAACTAGTTGAGACTCTGTTTCAAGTGATC  50

seq1  AAATGAAACAAAAGTAGGTTTTAAATGTGGTTGTTTCCGTGTCAGCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAACAAAAGTAGGTTTTAAATGTGGTTGTTTCCGTGTCAGCTTTA  100

seq1  GATCAGCTGAGGCGGTTCAGTACACTGCCTCTACCTCTTCACGGATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTGAGGCGGTTCAGTACACTGCCTCTACCTCTTCACGGATAATT  150

seq1  CGCCTTAGCCCAACTTCCACAGATAGGCCACTGGGACTTTTGCGTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTAGCCCAACTTCCACAGATAGGCCACTGGGACTTTTGCGTATTTT  200

seq1  CTTGTTTTGGCTTGTGGGAGTGACGAGCCTGCTCTTCGTGAGCTGTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTGGCTTGTGGGAGTGACGAGCCTGCTCTTCGTGAGCTGTGCCT  250

seq1  ATAAGCACTCTGAGGTCCCAGGTGGCAGCCATTAGACAACTCACCTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACTCTGAGGTCCCAGGTGGCAGCCATTAGACAACTCACCTGAAT  300

seq1  GAGTTTGTCTTTTCCTCAGTCCCTTGCCCTGTTAATCAGGGTTCTAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTCTTTTCCTCAGTCCCTTGCCCTGTTAATCAGGGTTCTAGGAA  350

seq1  ACAGGCCTGCAAGGCCATGCAAGTACGCACTTTTAACTAATAAGCCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTGCAAGGCCATGCAAGTACGCACTTTTAACTAATAAGCCACCT  400

seq1  CTCCAGAGCCTCCCTCACATTTGTTGTGGTGAAGATGCGTACTGGGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGCCTCCCTCACATTTGTTGTGGTGAAGATGCGTACTGGGTCTG  450

seq1  AAGTGCTTCCATTTTTATTTTTTGGGTTGTTTTGTTGTTTAGCTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTCCATTTTTATTTTTTGGGTTGTTTTGTTGTTTAGCTTTGTTT  500

seq1  TTGAGAGATGGTCTTGGGTAGCTTAGACTGGCCTGGAACTCACTGTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGATGGTCTTGGGTAGCTTAGACTGGCCTGGAACTCACTGTGTGG  550

seq1  CTCCGGCTGGCTTAGGCCACCTGATCAGACAGTCTTCTTCTGCAGTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGCTGGCTTAGGCCACCTGATCAGACAGTCTTCTTCTGCAGTAATG  600

seq1  GTTGCAATGCACTCATGGGGTGTGCTCCACCACGCCCCAGATGCAAGCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAATGCACTCATGGGGTGTGCTCCACCACGCCCCAGATGCAAGCGC  650

seq1  TCCTTTGACCTCGTGTGTCATTTGTGAATCCTGAGCTGTGTATAACTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGACCTCGTGTGTCATTTGTGAATCCTGAGCTGTGTATAACTTGG  700

seq1  GGAGCAGAAAAGACCCACAGAACCTGAGCTCCACAGAGCACAGTTGCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAAAAGACCCACAGAACCTGAGCTCCACAGAGCACAGTTGCTGC  750

seq1  CTGGCATCATGAGAGCCCTGGGCAGCAATGAGCAAGACACCTGAGCTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATCATGAGAGCCCTGGGCAGCAATGAGCAAGACACCTGAGCTTAC  800

seq1  AGGATCCACTGGGGCTTTTGGCAAACCCATTCTGCTATGGCACAAGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCACTGGGGCTTTTGGCAAACCCATTCTGCTATGGCACAAGGCTG  850

seq1  TCCCATTTCCTGAGGAAGCTGGCTGGTTAGCCTTTCCTGGAGGGCGGGAG  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCCATTTCCTGAGGAAGCTGGCTGGTTAGCC-TTCCTGGAGGGCGGGAG  899

seq1  TCAAACACAGAAAAGCCAGTTTACCACTGGGGTCAGCTGTAGCCGGACCT  950
      ||||||||||||||||  ||| ||||||||||||||||||||||||||||
seq2  TCAAACACAGAAAAGCAGGTTAACCACTGGGGTCAGCTGTAGCCGGACCT  949

seq1  CCAAAGAGTTGAAACTTACTGAAGTTAGTTTCCTTCTAAAGTTACTTTCC  1000
      || ||||||   |||||||||||| ||| |||||||||||| |||||| |
seq2  CC-AAGAGT--GAACTTACTGAAG-TAG-TTCCTTCTAAAG-TACTTT-C  992

seq1  TCTAAAGCCCGTGCAGGCTATTTTTCTTTTGCTAATTACAGGACATAGTT  1050
      |||||||||   ||| |||| ||||| ||||||| | |||||||||||  
seq2  TCTAAAGCC--GGCAAGCTAATTTTC-TTTGCTATTAACAGGACATAG-C  1038

seq1  TGACCTCTGTAAGGAAACCTG--ATATATGACAGTCCCACTTTAGGAAGC  1098
      |||| |||| |||||||| ||  ||||||||   ||||||||| ||||||
seq2  TGACTTCTG-AAGGAAACTTGAAATATATGAAGTTCCCACTTT-GGAAGC  1086

seq1  AG  1100
      ||
seq2  AG  1088

seq1: chr6_145123093_145123865
seq2: B6Ng01-173N12.g_70_842 (reverse)

seq1  ACAGCCGTGGAGGCTGCGCCCACACAGGAGGGGGACTCCTGGCTGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCGTGGAGGCTGCGCCCACACAGGAGGGGGACTCCTGGCTGTCTCT  50

seq1  AGAACACATCTTATGGCCATTTACCAGACTCGGGCATGATGGACCACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACATCTTATGGCCATTTACCAGACTCGGGCATGATGGACCACTGC  100

seq1  CAGTGTGACTGACGTGCAGCTCAATGTACCCTTGGATTTTAACGTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGACTGACGTGCAGCTCAATGTACCCTTGGATTTTAACGTTTCCT  150

seq1  TCTGAGATTTGTAAATTGGTAACTTTTTTTTAGTAACTATAGTGCAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATTTGTAAATTGGTAACTTTTTTTTAGTAACTATAGTGCAAAGC  200

seq1  TAGGGTCCTCAGCAGCTGGGATCTTTTTATTCCCCAACAAAAGCACAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCCTCAGCAGCTGGGATCTTTTTATTCCCCAACAAAAGCACAGGG  250

seq1  GACTACAAAAGGGAGGGGACCCCACCTAGGGTATTTTAATGAGCTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAAAAGGGAGGGGACCCCACCTAGGGTATTTTAATGAGCTTTCTG  300

seq1  AGTGAGAGGCATCAGACTTTATTGAGATGTATCCAAATAAAGACCATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGGCATCAGACTTTATTGAGATGTATCCAAATAAAGACCATTCA  350

seq1  AATCTTTGTGCAGTGTGGCTGGAACGCCTGGTGCTCTTAAATCACTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGTGCAGTGTGGCTGGAACGCCTGGTGCTCTTAAATCACTTTAG  400

seq1  CGGCTGACTGGAAAGATACCTGATTCCTCTCGGTATAAGGGTCCACCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGACTGGAAAGATACCTGATTCCTCTCGGTATAAGGGTCCACCATG  450

seq1  CTTACACACGCTGTAAGGGCTAGGAATAGCTAGGAATAGCTGAGGACGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACACGCTGTAAGGGCTAGGAATAGCTAGGAATAGCTGAGGACGCG  500

seq1  GATAGACAGCAGCATGTAGCACACTGAGTCGATGAACTGGCAGTTCGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACAGCAGCATGTAGCACACTGAGTCGATGAACTGGCAGTTCGAAT  550

seq1  GCCTGACCCTCTCCATTGCCACGGGGGAGGCGAAGTCCTTCATCATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCCTCTCCATTGCCACGGGGGAGGCGAAGTCCTTCATCATGTGG  600

seq1  TACAAGGTGGAGTGGAACTCGGTGCCCTCCCTGAGGGCCTCCGAGAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGTGGAGTGGAACTCGGTGCCCTCCCTGAGGGCCTCCGAGAACTT  650

seq1  GTCGTTCTCTTCCTGCATCTTGAGCATCTGCGCTCTGTCACCACTGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTCTCTTCCTGCATCTTGAGCATCTGCGCTCTGTCACCACTGAACA  700

seq1  TGAGGAGCGACCAGGTATGGTGCTCTGTTTCTTCTGACAGTTGTTCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCGACCAGGTATGGTGCTCTGTTTCTTCTGACAGTTGTTCCCTC  750

seq1  ACCTAGAAAGAGAACGTGAATTC  773
       ||||||||||||||||||||||
seq2  TCCTAGAAAGAGAACGTGAATTC  773