BAC Information

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BAC

Clone NameB6Ng01-174D01
Chromosome6 (Build37)
Map Location 101,159,753 - 101,306,703
singlet/doubletdoublet
Overlap genePdzrn3
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174D01.bB6Ng01-174D01.g
ACCGA002340GA002341
length948389
definitionB6Ng01-174D01.b B6Ng01-174D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,159,753 - 101,160,696)(101,306,315 - 101,306,703)
sequence
gaattcaggacatgtctccatagtagactgttctttctatgagcttggaa
ttgagtcatggcccactcgcttgctcatctgtgaggcttgaagaagccag
gtaacagtgcggggtggggcaggcattagctgggtgacttgggcattaaa
cagaagctggctcgggagtttaaaacagctctgctcggaagataaacaag
aagcactaaagacactcacttggggaaaaagctgccaactgaggcttcat
aattcacttctacctatgaggttcaagtaccatcaagtctgaaattactc
gcaaagcttctaccctggatttactttctatataaaacaacacttcacag
agtaagttaggagatgccactgagaccagtgatgtgtttccagagggaga
ttctgccaatgaatcagcaacactaattttttttaacattctctgggaaa
atataacaatttagtatgtttgtaaaactggataagcaccagtgatgttg
tccttaaccttaaaaaaacaaaaacaaaaacaaaaaaaacccaaaaaaac
aaacccagatatatgtgtgtctaaatgctaataaaagtttcctaccctat
aaatggggcagagttgaacactagatcacaggcaacacactcgctttagg
attctggtcttacggccagagtccagaggcagggaaaactgaagtgactt
agaacagtctctggtaagatacatttgatattagtgggcttgctgaagcg
aaacagtaataccagagagatacaaaggcttgaaagccattagagtcgtc
caaatggtaggaggcatgacatctctcaggtgagctgcctgttagaaagc
caacgagtgggtgctctaaaactacaattcaagttgtggaaaggagagag
ggatgggaaggtcctgttttcaccattcttcacttttcccatcacggg

ttcctcccctggggtagatgacagtggcccttactgctgtggctattgtg
aggattgagtaatgcacacgtgcctcctgcctctcaaatcctcaggaaat
agaaaccctgatgcatttttgcgctggcattgtgatgctcttgtaggaag
ctggagtgcgatgcaggcatgaatgaggctgctaagaggaaaggatgctt
gtagcttcttagctggggaagggttagtgtgagcagagtgcagagatggt
aagtagtgatggctggtgatgagagctaacctcatgcagcacccacggca
gtgctgacccgacttctaagaaaatattgatggaaatcagatggaactca
gagccctgcatatgatgtggggatagatggtggagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101159753_101160696
seq2: B6Ng01-174D01.b_43_990

seq1  GAATTCAGGACATGTCTCCATAGTAGACTGTTCTTTCTATGAGCTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACATGTCTCCATAGTAGACTGTTCTTTCTATGAGCTTGGAA  50

seq1  TTGAGTCATGGCCCACTCGCTTGCTCATCTGTGAGGCTTGAAGAAGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCATGGCCCACTCGCTTGCTCATCTGTGAGGCTTGAAGAAGCCAG  100

seq1  GTAACAGTGCGGGGTGGGGCAGGCATTAGCTGGGTGACTTGGGCATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGTGCGGGGTGGGGCAGGCATTAGCTGGGTGACTTGGGCATTAAA  150

seq1  CAGAAGCTGGCTCGGGAGTTTAAAACAGCTCTGCTCGGAAGATAAACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTGGCTCGGGAGTTTAAAACAGCTCTGCTCGGAAGATAAACAAG  200

seq1  AAGCACTAAAGACACTCACTTGGGGAAAAAGCTGCCAACTGAGGCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTAAAGACACTCACTTGGGGAAAAAGCTGCCAACTGAGGCTTCAT  250

seq1  AATTCACTTCTACCTATGAGGTTCAAGTACCATCAAGTCTGAAATTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTTCTACCTATGAGGTTCAAGTACCATCAAGTCTGAAATTACTC  300

seq1  GCAAAGCTTCTACCCTGGATTTACTTTCTATATAAAACAACACTTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTTCTACCCTGGATTTACTTTCTATATAAAACAACACTTCACAG  350

seq1  AGTAAGTTAGGAGATGCCACTGAGACCAGTGATGTGTTTCCAGAGGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTAGGAGATGCCACTGAGACCAGTGATGTGTTTCCAGAGGGAGA  400

seq1  TTCTGCCAATGAATCAGCAACACTAATTTTTTTTAACATTCTCTGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAATGAATCAGCAACACTAATTTTTTTTAACATTCTCTGGGAAA  450

seq1  ATATAACAATTTAGTATGTTTGTAAAACTGGATAAGCACCAGTGATGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACAATTTAGTATGTTTGTAAAACTGGATAAGCACCAGTGATGTTG  500

seq1  TCCTTAACCTTAAAAAAACAAAAACAAAAACAAAAAAAACCCAAAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAACCTTAAAAAAACAAAAACAAAAACAAAAAAAACCCAAAAAAAC  550

seq1  AAACCCAGATATATGTGTGTCTAAATGCTAATAAAAGTTTCCTACCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGATATATGTGTGTCTAAATGCTAATAAAAGTTTCCTACCCTAT  600

seq1  AAATGGGGCAGAGTTGAACACTAGATCACAGGCAACACACTCGCTTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGCAGAGTTGAACACTAGATCACAGGCAACACACTCGCTTTAGG  650

seq1  ATTCTGGTCTTACGGCCAGAGTCCAGAGGCAGGGAAAACTGAAGTGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTCTTACGGCCAGAGTCCAGAGGCAGGGAAAACTGAAGTGACTT  700

seq1  AGAACAGTCTCTGGTAAGATACATTTGATATTAGTGGGCTTGCTGAAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTCTCTGGTAAGATACATTTGATATTAGTGGGCTTGCTGAAGCG  750

seq1  AAACAGTAATACCAGAGAGATACAAAGGCTTGAAAGCCATTAGAGTCGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAATACCAGAGAGATACAAAGGCTTGAAAGCCATTAGAGTCGTC  800

seq1  CAAATGGTAGGAGGCATGACATCTCTCAGGTGAGCTGCCTGTTAGAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTAGGAGGCATGACATCTCTCAGGTGAGCTGCCTGTTAGAAAGC  850

seq1  CAACGAGTGGGTGCTCTAAAACTACAATTCAGGTTGTGGAAGGAAGAGAG  900
      ||||||||||||||||||||||||||||||| ||||||||| | ||||||
seq2  CAACGAGTGGGTGCTCTAAAACTACAATTCAAGTTGTGGAAAGGAGAGAG  900

seq1  GGATGGGAAGGTCCTG-TTTCACCAT--CTCAC-TTTCCCATCAGGGG  944
      |||||||||||||||| |||||||||   |||| |||||||||| |||
seq2  GGATGGGAAGGTCCTGTTTTCACCATTCTTCACTTTTCCCATCACGGG  948


seq1: chr6_101306315_101306703
seq2: B6Ng01-174D01.g_77_465 (reverse)

seq1  ATTTCTCCACCATCTATCCCCACATCATATGCAGGGCTCTGAGTTCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCACCATCTATCCCCACATCATATGCAGGGCTCTGAGTTCCATC  50

seq1  TGATTTCCATCAATATTTTCTTAGAAGTCGGGTCAGCACTGCCGTGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCATCAATATTTTCTTAGAAGTCGGGTCAGCACTGCCGTGGGTG  100

seq1  CTGCATGAGGTTAGCTCTCATCACCAGCCATCACTACTTACCATCTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAGGTTAGCTCTCATCACCAGCCATCACTACTTACCATCTCTGC  150

seq1  ACTCTGCTCACACTAACCCTTCCCCAGCTAAGAAGCTACAAGCATCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTCACACTAACCCTTCCCCAGCTAAGAAGCTACAAGCATCCTTT  200

seq1  CCTCTTAGCAGCCTCATTCATGCCTGCATCGCACTCCAGCTTCCTACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGCAGCCTCATTCATGCCTGCATCGCACTCCAGCTTCCTACAAG  250

seq1  AGCATCACAATGCCAGCGCAAAAATGCATCAGGGTTTCTATTTCCTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACAATGCCAGCGCAAAAATGCATCAGGGTTTCTATTTCCTGAGG  300

seq1  ATTTGAGAGGCAGGAGGCACGTGTGCATTACTCAATCCTCACAATAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAGGCAGGAGGCACGTGTGCATTACTCAATCCTCACAATAGCCA  350

seq1  CAGCAGTAAGGGCCACTGTCATCTACCCCAGGGGAGGAA  389
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTAAGGGCCACTGTCATCTACCCCAGGGGAGGAA  389


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