BAC Information

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BAC

Clone NameB6Ng01-174O06
Chromosome6 (Build37)
Map Location 52,725,746 - 52,865,396
singlet/doubletdoublet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik, Cpvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174O06.bB6Ng01-174O06.g
ACCGA002846GA002847
length979924
definitionB6Ng01-174O06.b B6Ng01-174O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,864,418 - 52,865,396)(52,725,746 - 52,726,658)
sequence
gaattcagtttagggattgaccagtcctctgatccttcctttcccccaaa
tctccaggttccagtatgtttttaactcctgaggaggctagaaaatgtaa
gaaagcagtatgcaaatgacttgatgtgagctcctactggcctctaagat
gctagggaagatgaaaggcggggtagctgactgattggctggcttgcaac
agtctcctgtagctgagcctggccatgaactcctgatcctcctgcctcca
cctccaaaaagctgtaattacagctgagtcatcactattcccaaatgaaa
gcttgtaggtttccccactgatttaaggccatccagtcttcagcaaagga
tgaacgtagacagatggctaatggcttggctgtaaatctggggtagattt
tcaccttgcagttcatgctttctatggatgtcattcagatgtcactgatg
tgtgaaggggcagtattccctatgctgtaacccaccattggaagagaatt
tgttgggacgcaagcctcaaggagcaaatatcctcacaggaaaatgtgga
gccttcagtgcgtgtcagggagatgtggggcctgggtcattggaggtgga
tggaccaagtccgtcttcttcctgcgtcatgtgtcaggaacatggtggct
gcttctcaaaggatccatagcaacagattgctgaggtatatttcaggtct
tttaggagcatagcattttttctccatacaaatccttttacttctttgag
aaaacgatttttgaagtgtgtatgagtgtacatctgtgtgtgtgtgtgtg
tacctgtgtgcatctatgtatatgtgtgtgtgtgcacacatacgagattg
attgtgtgtgtgtgtattttatagccttcaaagcctaaaatattttcatt
accaactcttcagaaaaaatcttacgcataccgaatacagtgcatctgtg
tctgccttttgttgtcggagtttatctgt
gaattctctcaggacagctctgctgctctacagccacagggcagctcagc
atcttgctgggaggagtggctaggggtgtctctgtgctatgtcacctggc
attctgaatcagtaagggacacagttccctcacagccactagagccatcc
gctactcagttcctgcagcacagggtcactaagtttgctcttggccttaa
caggagagagcattcaaagcccatgtgaacccaggcttcgatagaggaag
aggttgctagagactcttcaacaattaagggaggggaagaatgctccacc
cttctggcccagagtgaagggtggagtttgtgttttctcctcctctttct
gaggcccccctcgattcgagtccttagatccctcttcagtacggctgttg
tacaaggctctgatcacaccgcaggcactggagaggcggccacagtttga
agagcagctgatgtggagagaatgggtccaccacaggcagaacaccggtg
acataccctgtccagctgttactgtgacactgaaacaggaggaaaacctt
ctgcagtgagagctgccctcgggggtgttctggtctatcttgccctttgg
cttactgtgatgttaccgttagaggctcctcttctctgtgcctctaagct
tggatatggaagctgtacgcgtgtgttctgtgatgtgtgctgacctggac
tgggcagcccttgtagagtttgataagactcacacctctgtcctagggtt
tgcatgttttgattaacaaaggccatctggtctaccagtcactgacgcag
cagcagagtgacccacctcgcatatgtgaagctagttgggattgtctggc
tttctaactagaaagattaaaatacgtaaccagtcgttcagagacaccta
ttcttagggaacagcgtgagatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52864418_52865396
seq2: B6Ng01-174O06.b_40_1018 (reverse)

seq1  ACAGATGATACTCAGACAATAAAAGGCAGACACAGCTGCACTGTTTTCTG  50
      |||||| | |||| ||||| ||||||||||||||| |||||||| ||| |
seq2  ACAGAT-AAACTCCGACAACAAAAGGCAGACACAGATGCACTGTATTCGG  49

seq1  TATGCTTAAGATTTTTTTAGAAGAGTTTGTAATTGAAAATATTTTAGGCT  100
      ||||| |||||||||||  |||||||| |||| |||||||||||||||||
seq2  TATGCGTAAGATTTTTTCTGAAGAGTTGGTAA-TGAAAATATTTTAGGCT  98

seq1  TTGAA-GCTATAAAATACACACACACACAATCAATCTTGTATGTGTGCAC  149
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGAAGGCTATAAAATACACACACACACAATCAATCTCGTATGTGTGCAC  148

seq1  ACACACACATATACATAGATGCACACAGGTACACACACACACACACAGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATATACATAGATGCACACAGGTACACACACACACACACAGAT  198

seq1  GTACACTCATACACACTTCAAAAATCGTTTTCTCAAAGAAGT-AAAGGAT  248
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTACACTCATACACACTTCAAAAATCGTTTTCTCAAAGAAGTAAAAGGAT  248

seq1  TTGTATGGAGAAAAAATGCTATGCTCCTAAAAGACCTGAAATATACCTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGAGAAAAAATGCTATGCTCCTAAAAGACCTGAAATATACCTCA  298

seq1  GCAATCTGTTGCTATGGATCCTTTGAGAAGCAGCCACCATGTTCCTGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGTTGCTATGGATCCTTTGAGAAGCAGCCACCATGTTCCTGACA  348

seq1  CATGACGCAGGAAGAAGACGGACTTGGTCCATCCACCTCCAATGACCCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACGCAGGAAGAAGACGGACTTGGTCCATCCACCTCCAATGACCCAG  398

seq1  GCCCCACATCTCCCTGACACGCACTGAAGGCTCCACATTTTCCTGTGAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACATCTCCCTGACACGCACTGAAGGCTCCACATTTTCCTGTGAGG  448

seq1  ATATTTGCTCCTTGAGGCTTGCGTCCCAACAAATTCTCTTCCAATGGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTCCTTGAGGCTTGCGTCCCAACAAATTCTCTTCCAATGGTGG  498

seq1  GTTACAGCATAGGGAATACTGCCCCTTCACACATCAGTGACATCTGAATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGCATAGGGAATACTGCCCCTTCACACATCAGTGACATCTGAATG  548

seq1  ACATCCATAGAAAGCATGAACTGCAAGGTGAAAATCTACCCCAGATTTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATAGAAAGCATGAACTGCAAGGTGAAAATCTACCCCAGATTTAC  598

seq1  AGCCAAGCCATTAGCCATCTGTCTACGTTCATCCTTTGCTGAAGACTGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGCCATTAGCCATCTGTCTACGTTCATCCTTTGCTGAAGACTGGA  648

seq1  TGGCCTTAAATCAGTGGGGAAACCTACAAGCTTTCATTTGGGAATAGTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTAAATCAGTGGGGAAACCTACAAGCTTTCATTTGGGAATAGTGA  698

seq1  TGACTCAGCTGTAATTACAGCTTTTTGGAGGTGGAGGCAGGAGGATCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGCTGTAATTACAGCTTTTTGGAGGTGGAGGCAGGAGGATCAGG  748

seq1  AGTTCATGGCCAGGCTCAGCTACAGGAGACTGTTGCAAGCCAGCCAATCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGGCCAGGCTCAGCTACAGGAGACTGTTGCAAGCCAGCCAATCA  798

seq1  GTCAGCTACCCCGCCTTTCATCTTCCCTAGCATCTTAGAGGCCAGTAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTACCCCGCCTTTCATCTTCCCTAGCATCTTAGAGGCCAGTAGGA  848

seq1  GCTCACATCAAGTCATTTGCATACTGCTTTCTTACATTTTCTAGCCTCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATCAAGTCATTTGCATACTGCTTTCTTACATTTTCTAGCCTCCT  898

seq1  CAGGAGTTAAAAACATACTGGAACCTGGAGATTTGGGGGAAAGGAAGGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTAAAAACATACTGGAACCTGGAGATTTGGGGGAAAGGAAGGAT  948

seq1  CAGAGGACTGGTCAATCCCTAAACTGAATTC  979
      |||||||||||||||||||||||||||||||
seq2  CAGAGGACTGGTCAATCCCTAAACTGAATTC  979

seq1: chr6_52725746_52726658
seq2: B6Ng01-174O06.g_69_992

seq1  GAATTCTCTCAGGACAGCTCTGCTGCTCTACAGCCACAGGGCAGCTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGGACAGCTCTGCTGCTCTACAGCCACAGGGCAGCTCAGC  50

seq1  ATCTTGCTGGGAGGAGTGGCTAGGGGTGTCTCTGTGCTATGTCACCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTGGGAGGAGTGGCTAGGGGTGTCTCTGTGCTATGTCACCTGGC  100

seq1  ATTCTGAATCAGTAAGGGACACAGTTCCCTCACAGCCACTAGAGCCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATCAGTAAGGGACACAGTTCCCTCACAGCCACTAGAGCCATCC  150

seq1  GCTACTCAGTTCCTGCAGCACAGGGTCACTAAGTTTGCTCTTGGCCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCAGTTCCTGCAGCACAGGGTCACTAAGTTTGCTCTTGGCCTTAA  200

seq1  CAGGAGAGAGCATTCAAAGCCCATGTGAACCCAGGCTTCGATAGAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGAGCATTCAAAGCCCATGTGAACCCAGGCTTCGATAGAGGAAG  250

seq1  AGGTTGCTAGAGACTCTTCAACAATTAAGGGAGGGGAAGAATGCTCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTAGAGACTCTTCAACAATTAAGGGAGGGGAAGAATGCTCCACC  300

seq1  CTTCTGGCCCAGAGTGAAGGGTGGAGTTTGTGTTTTCTCCTCCTCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCCCAGAGTGAAGGGTGGAGTTTGTGTTTTCTCCTCCTCTTTCT  350

seq1  GAGGCCCCCCTCGATTCGAGTCCTTAGATCCCTCTTCAGTACGGCTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCCCCTCGATTCGAGTCCTTAGATCCCTCTTCAGTACGGCTGTTG  400

seq1  TACAAGGCTCTGATCACACCGCAGGCACTGGAGAGGCGGCCACAGTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGCTCTGATCACACCGCAGGCACTGGAGAGGCGGCCACAGTTTGA  450

seq1  AGAGCAGCTGATGTGGAGAGAATGGGTCCACCACAGGCAGAACACCGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCTGATGTGGAGAGAATGGGTCCACCACAGGCAGAACACCGGTG  500

seq1  ACATACCCTGTCCAGCTGTTACTGTGACACTGAAACAGGAGGAAAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCCTGTCCAGCTGTTACTGTGACACTGAAACAGGAGGAAAACCTT  550

seq1  CTGCAGTGAGAGCTGCCCTCGGGGGTGTTCTGGTCTATCTTGCCCTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGAGAGCTGCCCTCGGGGGTGTTCTGGTCTATCTTGCCCTTTGG  600

seq1  CTTACTGTGATGTTACCGTTAGAGGCTCCTCTTCTCTGTGCCTCTAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTGATGTTACCGTTAGAGGCTCCTCTTCTCTGTGCCTCTAAGCT  650

seq1  TGGATATGGAAGCTGTACGCGTGTGTTCTGTGATGTGTGCTGACCTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGGAAGCTGTACGCGTGTGTTCTGTGATGTGTGCTGACCTGGAC  700

seq1  TGGGCAGCCCTTGTAGAG-TTGATAAGACTCACACCTCTGTCCTAGGGTT  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGGGCAGCCCTTGTAGAGTTTGATAAGACTCACACCTCTGTCCTAGGGTT  750

seq1  TGCATG-TTTGTTTAACAAAGGCCATCTGGTCTACCAGTC-CTGGCGCAG  797
      |||||| |||| |||||||||||||||||||||||||||| ||| |||||
seq2  TGCATGTTTTGATTAACAAAGGCCATCTGGTCTACCAGTCACTGACGCAG  800

seq1  CAGCAGAGTGACGC-CCTCGCCTTTGTGAAG-TTGTTGGGGTT-TCTGCT  844
      |||||||||||| | |||||| | ||||||| | |||||| || ||||  
seq2  CAGCAGAGTGACCCACCTCGCATATGTGAAGCTAGTTGGGATTGTCTGGC  850

seq1  TTTCTAA-TAGAAAGATTAAAATAC-TAA-CAGTTGTTCAGAGACACATA  891
      ||||||| ||||||||||||||||| ||| |||| |||||||||||| ||
seq2  TTTCTAACTAGAAAGATTAAAATACGTAACCAGTCGTTCAGAGACACCTA  900

seq1  T--TTAAGGAACAGCGTGAGATGC  913
      |  ||| |||||||||||||||||
seq2  TTCTTAGGGAACAGCGTGAGATGC  924