BAC Information

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BAC

Clone NameB6Ng01-175I04
Chromosome6 (Build37)
Map Location 29,645,440 - 29,753,050
singlet/doubletdoublet
Overlap geneTspan33, Smo, 4631427C17Rik
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3
Downstream geneD330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175I04.bB6Ng01-175I04.g
ACCGA003295GA003296
length1,1471,131
definitionB6Ng01-175I04.b B6Ng01-175I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,645,440 - 29,646,582)(29,751,912 - 29,753,050)
sequence
gaattcagggggagggggagcccattagagaatgctagctgagtcctgtt
tcatagccagagagtgcgtgggcccctctggatttgataacaaggggaag
tccttccccatctctccattcttctgccagcttctactgcaccaaagctg
cagcccagaagcctatcatctttgcctctttcagcctgagaccaatagtt
cagatttgccagagggaataatagtgggcctgaacggcctcctgggaaaa
ggcagatccaaggccactgctggaaaggtttcacaggggccctggtgtga
agcacaggcacagggtacataagtgccagcctattgggacaaatgagaga
catcccagagggtggtgatgacgctcactctcagccattgtactcttggg
aagattgaagttttgggcttctgtcacagtctcggttttggaactagaaa
atccagcagttgctgaacttccacggttttatacaggagaaagttaaatc
gcaacaacagtcaggattttcacccgtggcaccagctggttagcaggctt
gggctggtgattttcaattgagccagcatgtgtgtagggaaagcccggga
cttggatggctgctactgtggctggggtaaccagtcaacccaagttctct
tggccttacttctgcttccctgggagatttgaaaacagcaaaagccctct
ccaccaccctgcagggctgagggaatgtactaaggggaactcaccacaaa
ggggcaggcactagtgaaaccaccttcagtggggcctcacatgggcttcc
cggccgaggccttgctcctttggagcctcactcttacctgccctcctcaa
tgccggcagccagtgcctctgtcactcgtgttcacgatctcacaatcgct
ttcttggattgtttgcttccaccctatgcccttttatcaaacaaataact
tgggaggttcacagtctggagagagccaagctcataggcccatttacctt
ggtgaagaatgtaaactatataattaaatataatattaaaacattcttaa
gatgtaccacaacgccttcatgaaaggccttttggcatctgccacacaat
ggattggacaaaaattgcctcttctccacctgcttgaagccacttgg
gaattcatagcctcatcactttcccttaaattattcaactagaacacagt
cttcttaaaataggaaatcttagaaatcaattatttataaagaaacattc
actaggccaaagaatagtgcttcattttttaaggaaaactgactgcattg
tggaagtacttaaaatattaaatttaaaacaatatttgtatcttcatttt
gtttataaaagcctcgggatataaaacgtttctttattctattcctagga
ggtttcttccctgaggtcacaagatcaagtcaaatgagacagatggacta
cttttaaagtgaaaaacaaaatgaccacctgacgctccttggaagctaat
atgagaaacaaagttgcaatgtttagctcaaaccccagggcctgtgctgc
caagtatttttctacttatataaccatagaacagatcgcaaataaaaatc
aaaacaaggaattaactgaaaatattttttattatttttttaaggcagat
cttactatctagccttagatggccaggaacttgctacagaccaggtacct
acttctacctcctgagtgctgggattaaaggtgtatgccaccatgccaga
cttaaaaatgcctgaaatctagaacaatctcccaaaatgattgaagaaat
ttaagtgtagaaaaagtaaatccatgtctttcttttgacaaacatgcaca
tttgacagatgtgtttatcatgaaacattttaaggacatttagaaacaaa
ccaatcagacgcagtggcttgaacctctaaaattggctgaatgaggcaga
ggcactgtcccaagttcaaggctatcttgggctacaaagagagttccagg
acatacctgcctgaaacaaacttacagaaacaaagtgcaccaagcaataa
aagacagtgagccctaagagacaggaaacaatgtgaactgacccagtgaa
cccgctgtctgctgtcgccttgaccggggagccccaagcctatcttagct
gagagattgagctgagagtctgtctgagagatcaaggcagatgttcagca
cacagtagcatctagatttgcaagaacttgtaaatactcgttgagtactg
aaacagagccatgtgtgaagtgccctcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29645440_29646582
seq2: B6Ng01-175I04.b_45_1191

seq1  GAATTCAGGGGGAGGGGGAGCCCATTAGAGAATGCTAGCTGAGTCCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGGAGGGGGAGCCCATTAGAGAATGCTAGCTGAGTCCTGTT  50

seq1  TCATAGCCAGAGAGTGCGTGGGCCCCTCTGGATTTGATAACAAGGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCCAGAGAGTGCGTGGGCCCCTCTGGATTTGATAACAAGGGGAAG  100

seq1  TCCTTCCCCATCTCTCCATTCTTCTGCCAGCTTCTACTGCACCAAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCATCTCTCCATTCTTCTGCCAGCTTCTACTGCACCAAAGCTG  150

seq1  CAGCCCAGAAGCCTATCATCTTTGCCTCTTTCAGCCTGAGACCAATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGAAGCCTATCATCTTTGCCTCTTTCAGCCTGAGACCAATAGTT  200

seq1  CAGATTTGCCAGAGGGAATAATAGTGGGCCTGAACGGCCTCCTGGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGCCAGAGGGAATAATAGTGGGCCTGAACGGCCTCCTGGGAAAA  250

seq1  GGCAGATCCAAGGCCACTGCTGGAAAGGTTTCACAGGGGCCCTGGTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCCAAGGCCACTGCTGGAAAGGTTTCACAGGGGCCCTGGTGTGA  300

seq1  AGCACAGGCACAGGGTACATAAGTGCCAGCCTATTGGGACAAATGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGCACAGGGTACATAAGTGCCAGCCTATTGGGACAAATGAGAGA  350

seq1  CATCCCAGAGGGTGGTGATGACGCTCACTCTCAGCCATTGTACTCTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGAGGGTGGTGATGACGCTCACTCTCAGCCATTGTACTCTTGGG  400

seq1  AAGATTGAAGTTTTGGGCTTCTGTCACAGTCTCGGTTTTGGAACTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAAGTTTTGGGCTTCTGTCACAGTCTCGGTTTTGGAACTAGAAA  450

seq1  ATCCAGCAGTTGCTGAACTTCCACGGTTTTATACAGGAGAAAGTTAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCAGTTGCTGAACTTCCACGGTTTTATACAGGAGAAAGTTAAATC  500

seq1  GCAACAACAGTCAGGATTTTCACCCGTGGCACCAGCTGGTTAGCAGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAACAGTCAGGATTTTCACCCGTGGCACCAGCTGGTTAGCAGGCTT  550

seq1  GGGCTGGTGATTTTCAATTGAGCCAGCATGTGTGTAGGGAAAGCCCGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTGATTTTCAATTGAGCCAGCATGTGTGTAGGGAAAGCCCGGGA  600

seq1  CTTGGATGGCTGCTACTGTGGCTGGGGTAACCAGTCAACCCAAGTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATGGCTGCTACTGTGGCTGGGGTAACCAGTCAACCCAAGTTCTCT  650

seq1  TGGCCTTACTTCTGCTTCCCTGGGAGATTTGAAAACAGCAAAAGCCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTACTTCTGCTTCCCTGGGAGATTTGAAAACAGCAAAAGCCCTCT  700

seq1  CCACCACCCTGCAGGGCTGAGGGAATGTACTAAGGGGAACTCACCACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCCTGCAGGGCTGAGGGAATGTACTAAGGGGAACTCACCACAAA  750

seq1  GGGGCAGGCACTAGTGAAACCACCTTCAGTGGGGCCTCACATGGGCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGCACTAGTGAAACCACCTTCAGTGGGGCCTCACATGGGCTTCC  800

seq1  CGGCCGAGGCCTTGCTCCTTTGGAGCCTCACTCTTACCTGCCCTCCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGGCCTTGCTCCTTTGGAGCCTCACTCTTACCTGCCCTCCTCAA  850

seq1  TGCCGGCAGCCAGTGCCTCTGTCACTCGTGTTCACGATCTCACAATCGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGCAGCCAGTGCCTCTGTCACTCGTGTTCACGATCTCACAATCGCT  900

seq1  TTCTTGGATTGTTTGCTTCCACCCTATGCCCTTTTATCAAACAAATAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTTGGATTGTTTGCTTCCACCCTATGCCCTTTTATCAAACAAATAAC-  949

seq1  TTGGGAGGTTCACAGTCTGGAAGAGAGCCAAGCTCATAGGCCCATTTACC  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGGGAGGTTCACAGTCTGG-AGAGAGCCAAGCTCATAGGCCCATTTACC  998

seq1  TTGGTGAAGAATGTAAACTATATAAATAAAATAATAATAATAAAACATCT  1050
      ||||||||||||||||||||||||| ||||   |||||| ||||||||  
seq2  TTGGTGAAGAATGTAAACTATATAATTAAA--TATAATATTAAAACATTC  1046

seq1  TAAAGATGTAACCACAAACGCC-TCATG-AAGGCCTTTTGGCATCTG-CA  1097
      | ||||||| ||||| |||||| ||||| |||||||||||||||||| ||
seq2  TTAAGATGT-ACCAC-AACGCCTTCATGAAAGGCCTTTTGGCATCTGCCA  1094

seq1  CAC-ATGGGT--GACAAAA--TGCTCTCT----CACCTGCTTGGAAAGCA  1138
      ||| |||| |  |||||||  ||| ||||    ||||||||| |||  ||
seq2  CACAATGGATTGGACAAAAATTGC-CTCTTCTCCACCTGCTT-GAAGCCA  1142

seq1  CTTGG  1143
      |||||
seq2  CTTGG  1147

seq1: chr6_29751912_29753050
seq2: B6Ng01-175I04.g_57_1187 (reverse)

seq1  TCCTGAAGGGCACTTCACA-TTGCCTCTGTTTCAGTACTCCACCGAGTAT  49
      ||||| |||||||||||||  || ||||||||||||||| || |||||||
seq2  TCCTG-AGGGCACTTCACACATGGCTCTGTTTCAGTACT-CAACGAGTAT  48

seq1  TTACAGGTTCTTTGCAAAATCCTAGATGCTACTGTGTGCTGACCATCTTG  99
      ||||| |||| |||||||   ||||||||||||||||||||| |||| ||
seq2  TTACAAGTTC-TTGCAAA--TCTAGATGCTACTGTGTGCTGAACATC-TG  94

seq1  CCTTGATCTCCTCAGACAGACTCTCAGCTCAATCTCCTCAGCTAAGATAG  149
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  CCTTGATCT-CTCAGACAGACTCTCAGCTCAATCT-CTCAGCTAAGATAG  142

seq1  GCCTTGGGGCTCCCCGGTCAAGGCGACAGCAGACAGCGGGTTCACTGGGT  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-CTTGGGGCTCCCCGGTCAAGGCGACAGCAGACAGCGGGTTCACTGGGT  191

seq1  CAGTTCACATTGTTTCCTGTCTCTTAGGGCTCACTGTCTTTTATTGCTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCACATTGTTTCCTGTCTCTTAGGGCTCACTGTCTTTTATTGCTTG  241

seq1  GTGCACTTTGTTTCTGTAAGTTTGTTTCAGGCAGGTATGTCCTGGAACTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTTTGTTTCTGTAAGTTTGTTTCAGGCAGGTATGTCCTGGAACTC  291

seq1  TCTTTGTAGCCCAAGATAGCCTTGAACTTGGGACAGTGCCTCTGCCTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAGCCCAAGATAGCCTTGAACTTGGGACAGTGCCTCTGCCTCAT  341

seq1  TCAGCCAATTTTAGAGGTTCAAGCCACTGCGTCTGATTGGTTTGTTTCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAATTTTAGAGGTTCAAGCCACTGCGTCTGATTGGTTTGTTTCTA  391

seq1  AATGTCCTTAAAATGTTTCATGATAAACACATCTGTCAAATGTGCATGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTTAAAATGTTTCATGATAAACACATCTGTCAAATGTGCATGTT  441

seq1  TGTCAAAAGAAAGACATGGATTTACTTTTTCTACACTTAAATTTCTTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAGAAAGACATGGATTTACTTTTTCTACACTTAAATTTCTTCAA  491

seq1  TCATTTTGGGAGATTGTTCTAGATTTCAGGCATTTTTAAGTCTGGCATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGGGAGATTGTTCTAGATTTCAGGCATTTTTAAGTCTGGCATGG  541

seq1  TGGCATACACCTTTAATCCCAGCACTCAGGAGGTAGAAGTAGGTACCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACACCTTTAATCCCAGCACTCAGGAGGTAGAAGTAGGTACCTGG  591

seq1  TCTGTAGCAAGTTCCTGGCCATCTAAGGCTAGATAGTAAGATCTGCCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCAAGTTCCTGGCCATCTAAGGCTAGATAGTAAGATCTGCCTTA  641

seq1  AAAAAATAATAAAAAATATTTTCAGTTAATTCCTTGTTTTGATTTTTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAATAAAAAATATTTTCAGTTAATTCCTTGTTTTGATTTTTATT  691

seq1  TGCGATCTGTTCTATGGTTATATAAGTAGAAAAATACTTGGCAGCACAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATCTGTTCTATGGTTATATAAGTAGAAAAATACTTGGCAGCACAGG  741

seq1  CCCTGGGGTTTGAGCTAAACATTGCAACTTTGTTTCTCATATTAGCTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGTTTGAGCTAAACATTGCAACTTTGTTTCTCATATTAGCTTCC  791

seq1  AAGGAGCGTCAGGTGGTCATTTTGTTTTTCACTTTAAAAGTAGTCCATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCGTCAGGTGGTCATTTTGTTTTTCACTTTAAAAGTAGTCCATCT  841

seq1  GTCTCATTTGACTTGATCTTGTGACCTCAGGGAAGAAACCTCCTAGGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTTGACTTGATCTTGTGACCTCAGGGAAGAAACCTCCTAGGAAT  891

seq1  AGAATAAAGAAACGTTTTATATCCCGAGGCTTTTATAAACAAAATGAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGAAACGTTTTATATCCCGAGGCTTTTATAAACAAAATGAAGA  941

seq1  TACAAATATTGTTTTAAATTTAATATTTTAAGTACTTCCACAATGCAGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATTGTTTTAAATTTAATATTTTAAGTACTTCCACAATGCAGTC  991

seq1  AGTTTTCCTTAAAAAATGAAGCACTATTCTTTGGCCTAGTGAATGTTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCTTAAAAAATGAAGCACTATTCTTTGGCCTAGTGAATGTTTCT  1041

seq1  TTATAAATAATTGATTTCTAAGATTTCCTATTTTAAGAAGACTGTGTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATAATTGATTTCTAAGATTTCCTATTTTAAGAAGACTGTGTTCT  1091

seq1  AGTTGAATAATTTAAGGGAAAGTGATGAGGCTATGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATAATTTAAGGGAAAGTGATGAGGCTATGAATTC  1131