BAC Information

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BAC

Clone NameB6Ng01-176A16
Chromosome6 (Build37)
Map Location 114,171,179 - 114,172,278
singlet/doubletsinglet
Overlap geneSlc6a11
Upstream geneMtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, LOC666491
Downstream geneSlc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176A16.bB6Ng01-176A16.g
ACCGA003686GA003687
length1791,104
definitionB6Ng01-176A16.b B6Ng01-176A16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caagtgaaataaaccctttcttccccaacttccttttggtcttggtgtgt
catcacagtaatagtagctctaactacgacacatacatacttatttatgt
catattataattacaggagagagcaacagtttaagagagggagggagaat
gggaggagttgcaggggagagggaaggtg

gaattcctctttccatacagaaagtgagcgggccatagggagaggcagaa
cacagctcagatgctgacccaggaacagaatgcccactcctgatggagtc
ctgtgagatgcttggtggccgactgatcactggtagttactcacaaggga
ctcacacctgtgatcagtggtcctgctatctcagcctcccacaggccaga
gtgagagaagcccgtaggctggtggaaaagcttgctcaaccatcactcaa
caaagcctgtcacagccctcaactctgagttaaaagattccagagctcct
gtccacacatcccaacgatgggcatcccaaactcatgtgtggatttgcac
ttgcagacaactgtcctggaagcccagcttccgtctctttcctttgagta
gtgggacttcagcttcttctggggaacctacctcttcccagctcagggtg
ggcccatgtccacaagcctgaccatgctagtttttccaggaatgtggaag
actttgaaaccttagactaggaagcagttgaatgctctctgcagaactta
atcagccacttggaagacagtaatgccaagttctgtgtagactgtggagg
tccagctcaagaggttccatgggagaataatattagcatctgggctagag
atcacttttatgatagtttggcaaaatttgccctttctgcctttgtccta
agaaaatttgcctgaggctaaatttaaaagcatcaggttaatttcctcaa
aggaagagatgtaaagacagtctaatattgactttgtcacatggttatta
gtaactagtaattagcaggttacaatttaaaaagccaacgggacagaaaa
gatactaaatgtacatgtacagtatggagaggaacaggaccctggcaagc
ctgatgtgatagccaaggcttgtgctggaagagaggctcggattgtgaga
ttagaactattaaggagaagcaagatctgcatggataaacggaaggctac
ccctcatggtgcaatataatatacagctggcttctggatacagtgggggt
tggctgtctattaagtcattctttaccatgggaacctcctatttcctcat
cttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_114171179_114172278
seq2: B6Ng01-176A16.g_63_1166 (reverse)

seq1  AAAGATGAG--AATAG--AGTTCCCATGGTAAAGAATGAACT-ATAGACA  45
      |||||||||  |||||   ||||||||||||||||||||  | |||||||
seq2  AAAGATGAGGAAATAGGAGGTTCCCATGGTAAAGAATGACTTAATAGACA  50

seq1  GCCCAACCCCACTGTATCCCAGAGCCAGCTGTATA-TATATTGCACCATT  94
      ||| | |||||||||||||   ||||||||||||| ||||||||||||| 
seq2  GCCAACCCCCACTGTATCCAGAAGCCAGCTGTATATTATATTGCACCATG  100

seq1  GAGGGTAGCCTTCCGTTTATTCCATTGCAGATCTGGCTTCTCCTTAATAG  144
        ||||||||||||||||| |||| ||||||||| |||||||||||||||
seq2  AGGGGTAGCCTTCCGTTTA-TCCA-TGCAGATCTTGCTTCTCCTTAATAG  148

seq1  TTCTAATCTCACAATCCGAGCCTCTCTTCCAGCACAAGCCTTGGCTATCA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCTCACAATCCGAGCCTCTCTTCCAGCACAAGCCTTGGCTATCA  198

seq1  CATCAGGCTTGCCAGGGTCCTGTTCCTCTCCATACTGTACATGTACATTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGCTTGCCAGGGTCCTGTTCCTCTCCATACTGTACATGTACATTT  248

seq1  AGTATCTTTTCTGTCCCGTTGGCTTTTTAAATTGTAACCTGCTAATTACT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTTTCTGTCCCGTTGGCTTTTTAAATTGTAACCTGCTAATTACT  298

seq1  AGTTACTAATAACCATGTGACAAAGTCAATATTAGACTGTCTTTACATCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTAATAACCATGTGACAAAGTCAATATTAGACTGTCTTTACATCT  348

seq1  CTTCCTTTGAGGAAATTAACCTGATGCTTTTAAATTTAGCCTCAGGCAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTGAGGAAATTAACCTGATGCTTTTAAATTTAGCCTCAGGCAAA  398

seq1  TTTTCTTAGGACAAAGGCAGAAAGGGCAAATTTTGCCAAACTATCATAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAGGACAAAGGCAGAAAGGGCAAATTTTGCCAAACTATCATAAA  448

seq1  AGTGATCTCTAGCCCAGATGCTAATATTATTCTCCCATGGAACCTCTTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTCTAGCCCAGATGCTAATATTATTCTCCCATGGAACCTCTTGA  498

seq1  GCTGGACCTCCACAGTCTACACAGAACTTGGCATTACTGTCTTCCAAGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACCTCCACAGTCTACACAGAACTTGGCATTACTGTCTTCCAAGTG  548

seq1  GCTGATTAAGTTCTGCAGAGAGCATTCAACTGCTTCCTAGTCTAAGGTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTAAGTTCTGCAGAGAGCATTCAACTGCTTCCTAGTCTAAGGTTT  598

seq1  CAAAGTCTTCCACATTCCTGGAAAAACTAGCATGGTCAGGCTTGTGGACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTTCCACATTCCTGGAAAAACTAGCATGGTCAGGCTTGTGGACA  648

seq1  TGGGCCCACCCTGAGCTGGGAAGAGGTAGGTTCCCCAGAAGAAGCTGAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCACCCTGAGCTGGGAAGAGGTAGGTTCCCCAGAAGAAGCTGAAG  698

seq1  TCCCACTACTCAAAGGAAAGAGACGGAAGCTGGGCTTCCAGGACAGTTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTACTCAAAGGAAAGAGACGGAAGCTGGGCTTCCAGGACAGTTGT  748

seq1  CTGCAAGTGCAAATCCACACATGAGTTTGGGATGCCCATCGTTGGGATGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTGCAAATCCACACATGAGTTTGGGATGCCCATCGTTGGGATGT  798

seq1  GTGGACAGGAGCTCTGGAATCTTTTAACTCAGAGTTGAGGGCTGTGACAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAGGAGCTCTGGAATCTTTTAACTCAGAGTTGAGGGCTGTGACAG  848

seq1  GCTTTGTTGAGTGATGGTTGAGCAAGCTTTTCCACCAGCCTACGGGCTTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTGAGTGATGGTTGAGCAAGCTTTTCCACCAGCCTACGGGCTTC  898

seq1  TCTCACTCTGGCCTGTGGGAGGCTGAGATAGCAGGACCACTGATCACAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCTGGCCTGTGGGAGGCTGAGATAGCAGGACCACTGATCACAGG  948

seq1  TGTGAGTCCCTTGTGAGTAACTACCAGTGATCAGTCGGCCACCAAGCATC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCCCTTGTGAGTAACTACCAGTGATCAGTCGGCCACCAAGCATC  998

seq1  TCACAGGACTCCATCAGGAGTGGGCATTCTGTTCCTGGGTCAGCATCTGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGACTCCATCAGGAGTGGGCATTCTGTTCCTGGGTCAGCATCTGA  1048

seq1  GCTGTGTTCTGCCTCTCCCTATGGCCCGCTCACTTTCTGTATGGAAAGAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTCTGCCTCTCCCTATGGCCCGCTCACTTTCTGTATGGAAAGAG  1098

seq1  GAATTC  1100
      ||||||
seq2  GAATTC  1104


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