BAC Information

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BAC

Clone NameB6Ng01-176G03
Chromosome6 (Build37)
Map Location 107,413,188 - 107,552,154
singlet/doubletdoublet
Overlap geneLrrn1
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176G03.bB6Ng01-176G03.g
ACCGA003931GA003932
length1551,104
definitionB6Ng01-176G03.b B6Ng01-176G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,552,000 - 107,552,154)(107,413,188 - 107,414,315)
sequence
tcaattattttacttctagaaccttagtcttaaaacccattgggagaaac
agtgcttctagaagcatgttttaattttggttttcctagaagcaagccct
gggaaatagaatcaggtaaaaagtttacgagggatgggggtggagtgtgt
atgtg

gaattctggctgagtagaactcatctacttgatcctatatgcaagaactt
gatgttaggattattacagttaatcaggacagctcaggtaccatcttaag
aactgtttcacttgcacctatccatccttatctacaaggtaggtggctca
gactagtccaaattttcaagtaacccacagtaggtttaggccaataaaag
atccactcccaactctctgagtctgcatttatattttaagcaatacacaa
ttttaatcagatcctctaaaccaatcctttctaaaaattgagaaacagaa
agtagacataaccaaattgatccaaattgatgcagctactaagtggtagt
actagaattgtatctcaggatttctgggtttctgaatctaaattccaggc
ttcactgaaaaagcaagtgtcaaagagacagtctgtgctatagtttgcag
agacagcaatgaagacactaagagtaatgtgtatcaaattgtccacatca
tcttcacagtttcaatgtggtagcatggtctcacatagcagctaagttaa
tgagtgtttgctatatacttctctgtctaagaagaaacgatgtatgtttt
agtatcacaaaaggcaagggataagatcctatccatgccatagtgtcttc
agggcctaagagaaaattcctcattgcatttgattgctggaagagttgag
attggaagaaatgagaccattgacccaaagtcacgtagcctaggctcctg
ggactggaagttctgatctagattgaacagaatgaagtaattttaccatg
gaactccaggaaattgttttggtgggttattgattgtttttaatttgatg
agagaattgagaaagtacaagagtctgctggcctcttactgcagaatcct
gagggtaagcggtatctctgccagctccactatggtcattagcctggagt
gtctgcctactctcccagtgctggtgctgctccctggacagtgtctctca
gtagtcagtatgagctgctctcatttttctgcctcccatggggaaggtgt
gcccagtgactgagatgataaagttcacttgagaaagagaatagctgcat
gata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107552000_107552154
seq2: B6Ng01-176G03.b_47_201 (reverse)

seq1  CACATACACACTCCACCCCCATCCCTCGTAAACTTTTTACCTGATTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACTCCACCCCCATCCCTCGTAAACTTTTTACCTGATTCTAT  50

seq1  TTCCCAGGGCTTGCTTCTAGGAAAACCAAAATTAAAACATGCTTCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGGCTTGCTTCTAGGAAAACCAAAATTAAAACATGCTTCTAGAA  100

seq1  GCACTGTTTCTCCCAATGGGTTTTAAGACTAAGGTTCTAGAAGTAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTTTCTCCCAATGGGTTTTAAGACTAAGGTTCTAGAAGTAAAATA  150

seq1  ATTGA  155
      |||||
seq2  ATTGA  155


seq1: chr6_107413188_107414315
seq2: B6Ng01-176G03.g_62_1165

seq1  GAATTCTGGCTGAGTAGAACTCATCTACTTGATCCTATATGCAAGAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTGAGTAGAACTCATCTACTTGATCCTATATGCAAGAACTT  50

seq1  GATGTTAGGATTATTACAGTTAATCAGGACAGCTCAGGTACCATCTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGGATTATTACAGTTAATCAGGACAGCTCAGGTACCATCTTAAG  100

seq1  AACTGTTTCACTTGCACCTATCCATCCTTATCTACAAGGTAGGTGGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTCACTTGCACCTATCCATCCTTATCTACAAGGTAGGTGGCTCA  150

seq1  GACTAGTCCAAATTTTCAAGTAACCCACAGTAGGTTTAGGCCAATAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTCCAAATTTTCAAGTAACCCACAGTAGGTTTAGGCCAATAAAAG  200

seq1  ATCCACTCCCAACTCTCTGAGTCTGCATTTATATTTTAAGCAATACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCCCAACTCTCTGAGTCTGCATTTATATTTTAAGCAATACACAA  250

seq1  TTTTAATCAGATCCTCTAAACCAATCCTTTCTAAAAATTGAGAAACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCAGATCCTCTAAACCAATCCTTTCTAAAAATTGAGAAACAGAA  300

seq1  AGTAGACATAACCAAATTGATCCAAATTGATGCAGCTACTAAGTGGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACATAACCAAATTGATCCAAATTGATGCAGCTACTAAGTGGTAGT  350

seq1  ACTAGAATTGTATCTCAGGATTTCTGGGTTTCTGAATCTAAATTCCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATTGTATCTCAGGATTTCTGGGTTTCTGAATCTAAATTCCAGGC  400

seq1  TTCACTGAAAAAGCAAGTGTCAAAGAGACAGTCTGTGCTATAGTTTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAAAAAGCAAGTGTCAAAGAGACAGTCTGTGCTATAGTTTGCAG  450

seq1  AGACAGCAATGAAGACACTAAGAGTAATGTGTATCAAATTGTCCACATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAATGAAGACACTAAGAGTAATGTGTATCAAATTGTCCACATCA  500

seq1  TCTTCACAGTTTCAATGTGGTAGCATGGTCTCACATAGCAGCTAAGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGTTTCAATGTGGTAGCATGGTCTCACATAGCAGCTAAGTTAA  550

seq1  TGAGTGTTTGCTATATACTTCTCTGTCTAAGAAGAAACGATGTATGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTGCTATATACTTCTCTGTCTAAGAAGAAACGATGTATGTTTT  600

seq1  AGTATCACAAAAGGCAAGGGATAAGATCCTATCCATGCCATAGTGTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACAAAAGGCAAGGGATAAGATCCTATCCATGCCATAGTGTCTTC  650

seq1  AGGGCCTAAGAGAAAATTCCTCATTGCATTTGATTGCTGGAAGAGTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTAAGAGAAAATTCCTCATTGCATTTGATTGCTGGAAGAGTTGAG  700

seq1  ATTGGAAGAAATGAGACCATTGACCCAAAGTCACGTAGCCTAGGCTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGAAATGAGACCATTGACCCAAAGTCACGTAGCCTAGGCTCCTG  750

seq1  GGACTGGAAGTTCTGATCTAGATTGAACAGAATGAAGTAATTTTACCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGAAGTTCTGATCTAGATTGAACAGAATGAAGTAATTTTACCATG  800

seq1  GAACTCCAGGAAATTGTTTTGGTGGGTTATTGATTGTTTTTAATTTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCAGGAAATTGTTTTGGTGGGTTATTGATTGTTTTTAATTTGATG  850

seq1  AGAGAATTGAGAAAGTACAAGAGTCTGCTGGCCTCTTACTGCAGAATCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTGAGAAAGTACAAGAGTCTGCTGGCCTCTTACTGCAGAATCCT  900

seq1  GAGGGTAAGCGGTATCTCTGCCAGCTCCACTATTGGTCCATTAGCCTGGA  950
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  GAGGGTAAGCGGTATCTCTGCCAGCTCCACTA-TGGT-CATTAGCCTGGA  948

seq1  GTGTTCTGCCTACTCTCCCCAGGTGCCTGGTGCTGCTCCCTGGAACAGTG  1000
      ||| |||||||||||||||   ||| ||||||||||||||||| ||||||
seq2  GTG-TCTGCCTACTCTCCC--AGTG-CTGGTGCTGCTCCCTGG-ACAGTG  993

seq1  TCTCTCAGTAGGTTCAGTAATGAGCTGCCTCTCATTTTCTTTGGCTTCCC  1050
      |||||||||||  ||||| |||||||| |||||||||  ||  || ||||
seq2  TCTCTCAGTAG--TCAGT-ATGAGCTG-CTCTCATTT--TTCTGCCTCCC  1037

seq1  ATGGGGAAAGTGTGCCCAGGTGACCTGAGATGGATAAAAGGGTCACTTGA  1100
      |||||||| ||||||||| |||| ||||||| ||||||  | ||||||||
seq2  ATGGGGAAGGTGTGCCCA-GTGA-CTGAGAT-GATAAA--GTTCACTTGA  1082

seq1  AGAAAAGAAGAAATAGCTGCCAATGATA  1128
        || ||    |||||||||  ||||||
seq2  GAAAGAG----AATAGCTGC--ATGATA  1104


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