BAC Information

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BAC

Clone NameB6Ng01-176H24
Chromosome6 (Build37)
Map Location 81,083,510 - 81,084,678
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043390
Downstream geneLOC100042991, LOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176H24.bB6Ng01-176H24.g
ACCGA004019GA004020
length1,1671,168
definitionB6Ng01-176H24.b B6Ng01-176H24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagaaaagttgatgctcttaacctgtgaccctcttgaaatcaa
ggacatacatttaaaatgtaaaataaagtgtctcagacacaccaacatat
acaactcaaaggtcaactgcctaagtgtttctttggctaataaaaataga
aaagaaaaatgtgtaaatatactatggaaacaggacattttggagaaaaa
aaagttcatcttttaaactgttttcatggtttcaagtactacttaacttt
gtgtaatagacactgctgagtcagaaggactgatactttacatggtaagt
acttatgcccacacagtatagagataatagacatcctttacacagaaaac
agatggtctttagctatcattttctgtgtgcttagaatgcacaactttcc
atacctctgtcagataattcatatggtgtctagcactttcctatataaaa
cccttcattttgcagtgaagctcatcaagatataggatactctagtgaga
agtaaaccatcccattaaacagaaataccccttaaggcagagtatttcaa
agggatatgaaacattgcatttgcaagggaagcactcaaagctcaggaag
ttaacaactcaagagtttcaggaactccctgaaacaagctataataccct
accccatccacaagcatagacagtagtaagaactgctgaatatcactaac
agaaaagctgacttactcagaagagtatcaaatcagttgagtctgaaaga
aggtcacaccagttagccagcatagaagaggcagtgatcagcaaaaagca
ctggaagaagctcagatcattctggaaaggacaccctccaatttgttaga
cttccaaaaggatgtacagtgtaatcttggtatccatattttatgagttt
ctacctgtgacagttagtctttggttgatatttttgtctgagccattttc
tgctccattaagtaacccaatcagtcatattttctaaacaattttaataa
aacttcacaaagttgaatacattagtctgcgattagtgcctgtctggtgt
gaataaatatttgctcatgttcctcaaggtaactgtatacaacacatgta
aacagctgattattttggaattaaggatatttctgaaataatgtgaacca
tttctctcataatctgt

gaattctggagtaatatttttgaggtaggagggtggtctatctactggat
atggtttctacagattctctctcctttgttgggtatttcagctaaagtcc
cccctgttgggtcatgggaatctctcggttccctggcatctggaactgtc
tagtggctgtctcttgcgcgcgctcgactcgaccagcaagaacgacgctg
caacaggatccttctgcacacgtttattgggagagcttgattgcagaggc
gaaaagaccattttgcccagagctggtgctgcttttataggcctaggaga
ggcgtgtctcataccctgattggttatgcactaagcctcatttgcatgtt
cctcatctgattggctactctctctcagtacctcacagagcctcattatc
atacctcatttgcatgtctcacatccgattggttactctcttagtacctt
acagaacctcattatcatgcctgggccaggcagtgtttttgcaaaaaact
ttcctgcatatgtacacattggttgtttgtccaatcttatgcgtggtggc
cagcagtagtcagtgccactcagcaacggcacatgtggcttcccacatct
ccccctgtttgttttaataaaatgaggctggactaggcctgtgcaattat
gcccatccgccgtggctcctgttttaggtcgttcctctaatgtcacagcc
ttacccgtcatagggtaaccctatcaccaccgggccccatgtcttaggtt
ggactgtgcacgaggaaagttgcccgtctctggataccgcagtgctgtgt
gacaataactgctaaatgacctagggcgaactctgcaaaagaggccagcc
aaaaattgaattagtggggaaatcatgatcaccctattgatgagcaaggg
ctgatcaatgatcgttgagtctctctcatctaatctcatgctgactaatt
cttgagcatagataaccaaatttcaggggaggagccgttttatagctaaa
agtgcctgagttacaatcacctttgtcacgtttttgttggtttggaattt
gcataccacagaggcatggaacgccagttccatcaggtcaattatggtca
gacacctaaccaaatgcactcgcatcccattcttaaggttgagtagagcc
agagaggtaatcctacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_81083510_81084678
seq2: B6Ng01-176H24.b_34_1200

seq1  GAATTCAAAGAAAAGTTGATGCTCTTAACCTGTGACCCTCTTGAAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAAAGTTGATGCTCTTAACCTGTGACCCTCTTGAAATCAA  50

seq1  GGACATACATTTAAAATGTAAAATAAAGTGTCTCAGACACACCAACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATACATTTAAAATGTAAAATAAAGTGTCTCAGACACACCAACATAT  100

seq1  ACAACTCAAAGGTCAACTGCCTAAGTGTTTCTTTGGCTAATAAAAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCAAAGGTCAACTGCCTAAGTGTTTCTTTGGCTAATAAAAATAGA  150

seq1  AAAGAAAAATGTGTAAATATACTATGGAAACAGGACATTTTGGAGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATGTGTAAATATACTATGGAAACAGGACATTTTGGAGAAAAA  200

seq1  AAAGTTCATCTTTTAAACTGTTTTCATGGTTTCAAGTACTACTTAACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCATCTTTTAAACTGTTTTCATGGTTTCAAGTACTACTTAACTTT  250

seq1  GTGTAATAGACACTGCTGAGTCAGAAGGACTGATACTTTACATGGTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATAGACACTGCTGAGTCAGAAGGACTGATACTTTACATGGTAAGT  300

seq1  ACTTATGCCCACACAGTATAGAGATAATAGACATCCTTTACACAGAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGCCCACACAGTATAGAGATAATAGACATCCTTTACACAGAAAAC  350

seq1  AGATGGTCTTTAGCTATCATTTTCTGTGTGCTTAGAATGCACAACTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTCTTTAGCTATCATTTTCTGTGTGCTTAGAATGCACAACTTTCC  400

seq1  ATACCTCTGTCAGATAATTCATATGGTGTCTAGCACTTTCCTATATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTGTCAGATAATTCATATGGTGTCTAGCACTTTCCTATATAAAA  450

seq1  CCCTTCATTTTGCAGTGAAGCTCATCAAGATATAGGATACTCTAGTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCATTTTGCAGTGAAGCTCATCAAGATATAGGATACTCTAGTGAGA  500

seq1  AGTAAACCATCCCATTAAACAGAAATACCCCTTAAGGCAGAGTATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCATCCCATTAAACAGAAATACCCCTTAAGGCAGAGTATTTCAA  550

seq1  AGGGATATGAAACATTGCATTTGCAAGGGAAGCACTCAAAGCTCAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATGAAACATTGCATTTGCAAGGGAAGCACTCAAAGCTCAGGAAG  600

seq1  TTAACAACTCAAGAGTTTCAGGAACTCCCTGAAACAAGCTATAATACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAACTCAAGAGTTTCAGGAACTCCCTGAAACAAGCTATAATACCCT  650

seq1  ACCCCATCCACAAGCATAGACAGTAGTAAGAACTGCTGAATATCACTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATCCACAAGCATAGACAGTAGTAAGAACTGCTGAATATCACTAAC  700

seq1  AGAAAAGCTGACTTACTCAGAAGAGTATCAAATCAGTTGAGTCTGAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCTGACTTACTCAGAAGAGTATCAAATCAGTTGAGTCTGAAAGA  750

seq1  AGGTCACACCAGTTAGCCAGCATAGAAGAGGCAGTGATCAGCAAAAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACACCAGTTAGCCAGCATAGAAGAGGCAGTGATCAGCAAAAAGCA  800

seq1  CTGGAAGAAGCTCAGATCATTCTGGAAAGGACACCCTCCAATTTGTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAAGCTCAGATCATTCTGGAAAGGACACCCTCCAATTTGTTAGA  850

seq1  CTTCCAAAAGGATGTACAGTGTAATCTTGGTATCCATATTTTATGAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAAGGATGTACAGTGTAATCTTGGTATCCATATTTTATGAGTTT  900

seq1  CTACCTGTGACAAGTTAGTCTTTGGTTGATATTTTTGTCTGAGCCATTTT  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTGAC-AGTTAGTCTTTGGTTGATATTTTTGTCTGAGCCATTTT  949

seq1  CTGCTCCATTAAGTAACCCAATCAGTCATATTTTCTAAACAATTTTAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCATTAAGTAACCCAATCAGTCATATTTTCTAAACAATTTTAATA  999

seq1  AAAC-TCACCAAGTTGAATACATTAGTCTGCGATTAGTTGCCTGTCTGGT  1049
      |||| |||| ||||||||||||||||||||||||||| ||||||||||||
seq2  AAACTTCACAAAGTTGAATACATTAGTCTGCGATTAG-TGCCTGTCTGGT  1048

seq1  GTGAATAAATATTTGCTCATGTTCCTCCAGGTTACTGTTATACAACACAT  1099
      ||||||||||||||||||||||||||| |||| |||| ||||||||||||
seq2  GTGAATAAATATTTGCTCATGTTCCTCAAGGTAACTG-TATACAACACAT  1097

seq1  GTAAACAGCTGA-TATTTTGGAATTACAGATA-TTCTGAAATAAATGTGA  1147
      |||||||||||| |||||||||||||  |||| ||||||||| |||||||
seq2  GTAAACAGCTGATTATTTTGGAATTAAGGATATTTCTGAAAT-AATGTGA  1146

seq1  ACAATTTCTCTCAATTATCTGT  1169
      || ||||||||| || ||||||
seq2  ACCATTTCTCTC-ATAATCTGT  1167


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