BAC Information

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BAC

Clone NameB6Ng01-176L08
Chromosome6 (Build37)
Map Location 127,691,848 - 127,806,583
singlet/doubletdoublet
Overlap genePrmt8
Upstream geneLOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b
Downstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176L08.bB6Ng01-176L08.g
ACCGA004177GA004178
length1,1531,068
definitionB6Ng01-176L08.b B6Ng01-176L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,691,848 - 127,693,005)(127,805,498 - 127,806,583)
sequence
gaattctttgtgatgatattacaataaagtgtcagtctcagaggaagagg
gtaggatgttcgctggcactgaatttctggctggaaatgctcttttccta
agaggttagtcggcagggtctgagggagtgaacctggactgtgatttagc
ttagtttctagataccagtcctgtggaccctcccggaccccccagtgcat
ggaagccgaacttgtggggtgagccccataatcttcaagcatgccaagct
cccaggtgatgacactcatgaactcgggcattgacctgcctttctcagcc
cctctgagcccctgagctcttacatggccctcaacatggaagctgagcac
tacccgggtgctactaaaattgacacaaggccagaacaggccacagaacc
ctggaagggaaacagctgaaggttctagaaagcacattagttctgcagtg
ggtgcttggaggctggatgggttccatcacatttggggctgtgtggcccg
gactgatccctgactaactcactagaaccccttacggtgcaactggaagg
cggtagtggtgctgcgcacggtgtcccggtgcttcctgtcagcctctggc
tgtctctttgtggcacaacagcaatgcttgcctcaaatcaaaaccacact
gctcccacacagcactccctgtctcctggatcagtaaccgctgcgaaagc
atcgcctggatttgttgggcctgacctattttttaaataaaccggggctg
ttttccattcttagtcacttttctcccaagcatccacatattaaattctc
ctcttatctcctcagatatttgggctgcgaacgatgtcaggttaattgga
tgcttggctcctggctcttcctcttcaatgggcttgtaagcagatttccc
aggctagcaccccctcctccttcctcttccctctgtaggtcaacaggatc
ctcttctcttccactgtgatcgtctctcctccaggtgtctgtgctcactg
gctctcctctgcacttatgagcagatgcacacaacagagacgtctctctc
tcagccttcttcctgttgggagttaggagcccttcacttcttagacttga
gtccattcatccatggatctatacttgaactcctggatctgtctctcagg
ctg
gaattcaaggattcagtgaaccaagcattagcccgttgccacgagctgtt
ctggatgccactcatttagtgtttttgagtcacagaacagaaaggatgct
acttttgagctggccgggcaacatggtacctccaaagggatataagacac
aggagacaaggcacagaaatatagggcattaagagatttagggaagagtc
tagaagcagtgctctaagccgcagaccctgtggaactgatagcgctcctc
tgctctggctgtctgcactggaagggaagagcagctttttggctctgctc
agttcaaacatttaggtgagagttggaaccgtgtcctgtgctggcctggt
gtgggagccaagaaagaagtaatgagggtgggggaagccaggaggagcca
ggccataattgcctgagggcactaattgtggccacagccgcaggaggccc
tgtgatctcccggcctgctgggctgcacactacataatggctccttagtt
atgggatccatactaagcccagatcctgttctacacaggcaggcaggaca
gagaatgcagggcttattagactgaggcactgggagcgacaagtcttggc
tgcttttttttttctgtccctgctgctgactgacgacacagtctaagcca
attagggaacatctgtttgcctatgaggcgagctgatgggatgacttctt
acagcagggcactgtgctctgctgaatccctctgagtgagcccttctccc
aacagagtgacacttgggtggtgtcccaccatgcccattatgtgttagat
gctgttccaagcggagcagtggaaaaaaggaccgcaatgtctcgaatgga
gcttgcggtcccctagagagtgtattcgttgggtttctttggctgtgata
cacaccatgaccaaagcaacgtgaggagcaagggtctatttgacttacag
ttggagatcattgtgaaagaaagcagagcgggactcaggcagactgcgtt
agaagacagtgaggcctccagatatggttatctcatgcctgctcagtttg
ttctttcttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_127691848_127693005
seq2: B6Ng01-176L08.b_41_1193

seq1  GAATTCTTTGTGATGATATTACAATAAAGTGTCAGTCTCAGAGGAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGATGATATTACAATAAAGTGTCAGTCTCAGAGGAAGAGG  50

seq1  GTAGGATGTTCGCTGGCACTGAATTTCTGGCTGGAAATGCTCTTTTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGTTCGCTGGCACTGAATTTCTGGCTGGAAATGCTCTTTTCCTA  100

seq1  AGAGGTTAGTCGGCAGGGTCTGAGGGAGTGAACCTGGACTGTGATTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTAGTCGGCAGGGTCTGAGGGAGTGAACCTGGACTGTGATTTAGC  150

seq1  TTAGTTTCTAGATACCAGTCCTGTGGACCCTCCCGGACCCCCCAGTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCTAGATACCAGTCCTGTGGACCCTCCCGGACCCCCCAGTGCAT  200

seq1  GGAAGCCGAACTTGTGGGGTGAGCCCCATAATCTTCAAGCATGCCAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCGAACTTGTGGGGTGAGCCCCATAATCTTCAAGCATGCCAAGCT  250

seq1  CCCAGGTGATGACACTCATGAACTCGGGCATTGACCTGCCTTTCTCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGATGACACTCATGAACTCGGGCATTGACCTGCCTTTCTCAGCC  300

seq1  CCTCTGAGCCCCTGAGCTCTTACATGGCCCTCAACATGGAAGCTGAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGCCCCTGAGCTCTTACATGGCCCTCAACATGGAAGCTGAGCAC  350

seq1  TACCCGGGTGCTACTAAAATTGACACAAGGCCAGAACAGGCCACAGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGGGTGCTACTAAAATTGACACAAGGCCAGAACAGGCCACAGAACC  400

seq1  CTGGAAGGGAAACAGCTGAAGGTTCTAGAAAGCACATTAGTTCTGCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGGAAACAGCTGAAGGTTCTAGAAAGCACATTAGTTCTGCAGTG  450

seq1  GGTGCTTGGAGGCTGGATGGGTTCCATCACATTTGGGGCTGTGTGGCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTGGAGGCTGGATGGGTTCCATCACATTTGGGGCTGTGTGGCCCG  500

seq1  GACTGATCCCTGACTAACTCACTAGAACCCCTTACGGTGCAACTGGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATCCCTGACTAACTCACTAGAACCCCTTACGGTGCAACTGGAAGG  550

seq1  CGGTAGTGGTGCTGCGCACGGTGTCCCGGTGCTTCCTGTCAGCCTCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGTGGTGCTGCGCACGGTGTCCCGGTGCTTCCTGTCAGCCTCTGGC  600

seq1  TGTCTCTTTGTGGCACAACAGCAATGCTTGCCTCAAATCAAAACCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTTGTGGCACAACAGCAATGCTTGCCTCAAATCAAAACCACACT  650

seq1  GCTCCCACACAGCACTCCCTGTCTCCTGGATCAGTAACCGCTGCGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACACAGCACTCCCTGTCTCCTGGATCAGTAACCGCTGCGAAAGC  700

seq1  ATCGCCTGGATTTGTTGGGCCTGACCTATTTTTTAAATAAACCGGGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCTGGATTTGTTGGGCCTGACCTATTTTTTAAATAAACCGGGGCTG  750

seq1  TTTTCCATTCTTAGTCACTTTTCTCCCAAGCATCCACATATTAAATTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTCTTAGTCACTTTTCTCCCAAGCATCCACATATTAAATTCTC  800

seq1  CTCTTATCTCCTCAGATATTTGGGCTGCGAACGATGTCAGGTTAATTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCTCCTCAGATATTTGGGCTGCGAACGATGTCAGGTTAATTGGA  850

seq1  TGCTTGGCTCCTGGCTCTTCCTCTTCAATGGGCTTGTAAGCAGATTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTCCTGGCTCTTCCTCTTCAATGGGCTTGTAAGCAGATTTCCC  900

seq1  AGGCTAGCACCCCCTCCTCCTTCCTCTCCCCTCTGTAGGTCAACAGGATC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGCTAGCACCCCCTCCTCCTTCCTCTTCCCTCTGTAGGTCAACAGGATC  950

seq1  CTC-TCTC-TCCACTGTGGATCGTCTCT-CTCCAGGTGGCCTGTGCTCAC  997
      ||| |||| |||||||| |||||||||| |||||||| | ||||||||| 
seq2  CTCTTCTCTTCCACTGT-GATCGTCTCTCCTCCAGGT-GTCTGTGCTCA-  997

seq1  CTGGCTTCTCCTCTGCCACTATGAGCAGATGCACACAACAGAGACGGTCT  1047
      ||||| ||||||||||   |||||||||||||||||||||||||| ||||
seq2  CTGGC-TCTCCTCTGCACTTATGAGCAGATGCACACAACAGAGAC-GTCT  1045

seq1  C-CTCTCAGCCTTCTCCCTG-TGGGAGTTAGGGAGGCCCTTCACTTC-TA  1094
      | ||||||||||||| |||| |||||||||||   |||||||||||| ||
seq2  CTCTCTCAGCCTTCTTCCTGTTGGGAGTTAGG--AGCCCTTCACTTCTTA  1093

seq1  GACTTGAGTCACATCATCCCTATGGGATCTATAC-TGGACTCCTGAGTCT  1143
      ||||||||||   |||||| |   |||||||||| || |||||||  |||
seq2  GACTTGAGTCCATTCATCCAT---GGATCTATACTTGAACTCCTGGATCT  1140

seq1  GGTCCTCTCAGGCTG  1158
      |   |||||||||||
seq2  G--TCTCTCAGGCTG  1153

seq1: chr6_127805498_127806583
seq2: B6Ng01-176L08.g_64_1131 (reverse)

seq1  AAAAAAAAAAAGAAAGAAACAAACTGAGCAAGCCATGAGGATTAAACCAA  50
      |||||||||||||||| |||||||||||| || ||||| |||  |||| |
seq2  AAAAAAAAAAAGAAAG-AACAAACTGAGC-AGGCATGA-GAT--AACC-A  44

seq1  TATCTGGAGGCCCCTCCACTGTC-TCTAACGCAGTTCCTGCCTTGAGTTC  99
      ||||||||||||    ||||||| |||||||||||  ||||| |||| ||
seq2  TATCTGGAGGCC---TCACTGTCTTCTAACGCAGT--CTGCC-TGAG-TC  87

seq1  CCGCTCTGCTTTCTTTTCACAATGATCTCCAACTGTAAGGTCAAATAGAC  149
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  CCGCTCTGCTTTC-TTTCACAATGATCTCCAACTGTAA-GTCAAATAGAC  135

seq1  CCTTTGCTCCTCACGTTGCTTTTGGTCATGGTGTTGTATCACAGCCAAAG  199
      || |||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  CC-TTGCTCCTCACGTTGC-TTTGGTCATGGTG-TGTATCACAGCCAAAG  182

seq1  AAACCCAACGAATACACTCCTCTAGGGGACCGCAAGCTCCATTCGAGACA  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAACCCAACGAATACACT-CTCTAGGGGACCGCAAGCTCCATTCGAGACA  231

seq1  TTGCGGTCCTTTTTTCCACTGCTCCGCTTGGAACAGCATCTAACACATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGTCCTTTTTTCCACTGCTCCGCTTGGAACAGCATCTAACACATAA  281

seq1  TGGGCATGGTGGGACACCACCCAAGTGTCACTCTGTTGGGAGAAGGGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGGTGGGACACCACCCAAGTGTCACTCTGTTGGGAGAAGGGCTC  331

seq1  ACTCAGAGGGATTCAGCAGAGCACAGTGCCCTGCTGTAAGAAGTCATCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGGGATTCAGCAGAGCACAGTGCCCTGCTGTAAGAAGTCATCCC  381

seq1  ATCAGCTCGCCTCATAGGCAAACAGATGTTCCCTAATTGGCTTAGACTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCGCCTCATAGGCAAACAGATGTTCCCTAATTGGCTTAGACTGT  431

seq1  GTCGTCAGTCAGCAGCAGGGACAGAAAAAAAAAAGCAGCCAAGACTTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCAGTCAGCAGCAGGGACAGAAAAAAAAAAGCAGCCAAGACTTGTC  481

seq1  GCTCCCAGTGCCTCAGTCTAATAAGCCCTGCATTCTCTGTCCTGCCTGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGTGCCTCAGTCTAATAAGCCCTGCATTCTCTGTCCTGCCTGCC  531

seq1  TGTGTAGAACAGGATCTGGGCTTAGTATGGATCCCATAACTAAGGAGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGAACAGGATCTGGGCTTAGTATGGATCCCATAACTAAGGAGCCA  581

seq1  TTATGTAGTGTGCAGCCCAGCAGGCCGGGAGATCACAGGGCCTCCTGCGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGTGTGCAGCCCAGCAGGCCGGGAGATCACAGGGCCTCCTGCGG  631

seq1  CTGTGGCCACAATTAGTGCCCTCAGGCAATTATGGCCTGGCTCCTCCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCACAATTAGTGCCCTCAGGCAATTATGGCCTGGCTCCTCCTGG  681

seq1  CTTCCCCCACCCTCATTACTTCTTTCTTGGCTCCCACACCAGGCCAGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCACCCTCATTACTTCTTTCTTGGCTCCCACACCAGGCCAGCAC  731

seq1  AGGACACGGTTCCAACTCTCACCTAAATGTTTGAACTGAGCAGAGCCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACGGTTCCAACTCTCACCTAAATGTTTGAACTGAGCAGAGCCAAA  781

seq1  AAGCTGCTCTTCCCTTCCAGTGCAGACAGCCAGAGCAGAGGAGCGCTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTCTTCCCTTCCAGTGCAGACAGCCAGAGCAGAGGAGCGCTATC  831

seq1  AGTTCCACAGGGTCTGCGGCTTAGAGCACTGCTTCTAGACTCTTCCCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACAGGGTCTGCGGCTTAGAGCACTGCTTCTAGACTCTTCCCTAA  881

seq1  ATCTCTTAATGCCCTATATTTCTGTGCCTTGTCTCCTGTGTCTTATATCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAATGCCCTATATTTCTGTGCCTTGTCTCCTGTGTCTTATATCC  931

seq1  CTTTGGAGGTACCATGTTGCCCGGCCAGCTCAAAAGTAGCATCCTTTCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGGTACCATGTTGCCCGGCCAGCTCAAAAGTAGCATCCTTTCTG  981

seq1  TTCTGTGACTCAAAAACACTAAATGAGTGGCATCCAGAACAGCTCGTGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACTCAAAAACACTAAATGAGTGGCATCCAGAACAGCTCGTGGC  1031

seq1  AACGGGCTAATGCTTGGTTCACTGAATCCTTGAATTC  1086
      |||||||||||||||||||||||||||||||||||||
seq2  AACGGGCTAATGCTTGGTTCACTGAATCCTTGAATTC  1068