BAC Information

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BAC

Clone NameB6Ng01-177A11
Chromosome6 (Build37)
Map Location 44,777,098 - 44,778,281
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177A11.bB6Ng01-177A11.g
ACCGA004411GA004412
length1,1481,134
definitionB6Ng01-177A11.b B6Ng01-177A11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ttaataagctggaaaaatgcaataagatggaaaaattaccatcaaacaca
taatcaatgttttgccttaagaactagcaaaaaacttatgtctgccagct
taaaacttgtagacttgatttgccaatgtcttttctctgctaactctctt
cgagacaaaaagttcagaaacacaaatctaagaactaaatgatgttagaa
aatgtccaggctatgttagaaatctttcttttctttgtttccatcttaag
gaatgctcaaaatccagaatatttgtctcatattatgttttaatgaataa
aaactttctttccattataatgcattattttaaagcttattcctaaggta
gaaaaaaatatgttagcgttaacttgagttttacatgctgttcaatgacc
atgtttctccatatcctatgttcacaatcatctaggaactgacaaacaat
ataatgacaaatatattattaacacaggtttttatggaggtttttttaag
atatgatctcacctagcctaatctgctgaactttaaacttttgccctcct
acccctacttcaggattgagccactgtctcacatcagttctatgtggttc
ttggaatacaatccaggttttgtttattctataaaatgcactcttccaac
tggatctcatttcaagctccactcatgagaattttaaaatttcatttttc
tcacacaaaacaatgttacaccttccctacaataatgcatcaacatatat
atgtgaatttattacatgtagatatatttaattacataaaagcatggcat
acttctcatattagacatatattcaaattctatgctttccataaaccaaa
ccaactgcacattgtctatgtccacttttcaagaaaatctttagcacatg
aaaatgcttaaaacggagttccggaattgctgtggtacaagaatttataa
atcttgtgacaaagggtagattggctctgtgtaatacactcttgactcaa
aacataacatatatattatcatcatcatcaagagtgtaaccaattgattc
ttttgttgtttactgcaggtagcagtaatctcaaaaccactagcaaatta
tactggaaaaaatctagctttatgggagtgtttatcagcagttcactg

gaattcttcccccacctgatagtcaatcaactgatgtgccaaaaaacggg
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctattaatgcctcaaatgagtattc
agccggtgccagtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccggggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaaaggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggagaaatctgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctctgccttaagattaacggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatctctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccgttgccttgacgtgggaatcctct
gaaggacagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaaggatattatgcagcatttgggccttattttgtccaatga
aaacgccccatcgggagggtattcaactaaagcaaaaaatatcatgcaaa
gatgggtataaagaaggaaagggttaggacatcaagaacaggaaggatag
agccttattcttactatggaaaccagacagaacggtctggttttctaacg
gcattggggcagcacgaccatacatgaaacaggacccaggtggtcctcat
gacctatcctctgaaaactaggagcgtgatcactgtaggacgtgacctgg
cattgaccctactcacctgattccatttgataaaaagtcgtatgaacgtc
ttgactgagcctatgaccaggtaccttttgggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44777098_44778281
seq2: B6Ng01-177A11.b_53_1200 (reverse)

seq1  CAGTGAACTGCTTGATTAAACACTCTCACATAAAGCCTTAGATTTTTTTT  50
      ||||||||||| ||| ||||||  ||| ||||||||  ||||   |||||
seq2  CAGTGAACTGC-TGA-TAAACA--CTCCCATAAAGC--TAGA---TTTTT  41

seq1  TCTATGTATTTATTTTGCTAGTGGTTTTGAGATTTACTTGCCTACTCTGC  100
      || | |||  || ||||||||||||||||||| |||||   |||| ||||
seq2  TCCA-GTA--TAATTTGCTAGTGGTTTTGAGA-TTACT--GCTAC-CTGC  84

seq1  AGTAAACAACAGAAGAAATCAAATTTGGTTTACACTTCTTTTGATTGATT  150
      ||||||||||| ||| ||||||  |||| |||||   || |||| ||| |
seq2  AGTAAACAACAAAAG-AATCAA--TTGG-TTACA---CTCTTGA-TGA-T  125

seq1  GATTGATAAATTAATTAATTATTGGTTTATGTTTTGAGTCAAGAGTGTAT  200
      || ||||||      ||  |||    ||||||||||||||||||||||||
seq2  GA-TGATAA------TATATAT---GTTATGTTTTGAGTCAAGAGTGTAT  165

seq1  TACACAGAGCCAATTCTACCCTTTGTCACAAGATTTATAAATTCTTGTAC  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGCCAA-TCTACCCTTTGTCACAAGATTTATAAATTCTTGTAC  214

seq1  CACAGCAATTCCGGAACTCCGTTTTAAGCATTTTCATGTGCTAAAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAATTCCGGAACTCCGTTTTAAGCATTTTCATGTGCTAAAGATTT  264

seq1  TCTTGAAAAGTGGACATAGACAATGTGCAGTTGGTTTGGTTTATGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAGTGGACATAGACAATGTGCAGTTGGTTTGGTTTATGGAAAG  314

seq1  CATAGAATTTGAATATATGTCTAATATGAGAAGTATGCCATGCTTTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATTTGAATATATGTCTAATATGAGAAGTATGCCATGCTTTTATG  364

seq1  TAATTAAATATATCTACATGTAATAAATTCACATATATATGTTGATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATATATCTACATGTAATAAATTCACATATATATGTTGATGCAT  414

seq1  TATTGTAGGGAAGGTGTAACATTGTTTTGTGTGAGAAAAATGAAATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGGGAAGGTGTAACATTGTTTTGTGTGAGAAAAATGAAATTTTA  464

seq1  AAATTCTCATGAGTGGAGCTTGAAATGAGATCCAGTTGGAAGAGTGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCATGAGTGGAGCTTGAAATGAGATCCAGTTGGAAGAGTGCATT  514

seq1  TTATAGAATAAACAAAACCTGGATTGTATTCCAAGAACCACATAGAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAATAAACAAAACCTGGATTGTATTCCAAGAACCACATAGAACTG  564

seq1  ATGTGAGACAGTGGCTCAATCCTGAAGTAGGGGTAGGAGGGCAAAAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGACAGTGGCTCAATCCTGAAGTAGGGGTAGGAGGGCAAAAGTTT  614

seq1  AAAGTTCAGCAGATTAGGCTAGGTGAGATCATATCTTAAAAAAACCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAGCAGATTAGGCTAGGTGAGATCATATCTTAAAAAAACCTCCA  664

seq1  TAAAAACCTGTGTTAATAATATATTTGTCATTATATTGTTTGTCAGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCTGTGTTAATAATATATTTGTCATTATATTGTTTGTCAGTTCC  714

seq1  TAGATGATTGTGAACATAGGATATGGAGAAACATGGTCATTGAACAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGATTGTGAACATAGGATATGGAGAAACATGGTCATTGAACAGCAT  764

seq1  GTAAAACTCAAGTTAACGCTAACATATTTTTTTCTACCTTAGGAATAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTCAAGTTAACGCTAACATATTTTTTTCTACCTTAGGAATAAGC  814

seq1  TTTAAAATAATGCATTATAATGGAAAGAAAGTTTTTATTCATTAAAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAATGCATTATAATGGAAAGAAAGTTTTTATTCATTAAAACAT  864

seq1  AATATGAGACAAATATTCTGGATTTTGAGCATTCCTTAAGATGGAAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGACAAATATTCTGGATTTTGAGCATTCCTTAAGATGGAAACAA  914

seq1  AGAAAAGAAAGATTTCTAACATAGCCTGGACATTTTCTAACATCATTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAGATTTCTAACATAGCCTGGACATTTTCTAACATCATTTAG  964

seq1  TTCTTAGATTTGTGTTTCTGAACTTTTTGTCTCGAAGAGAGTTAGCAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGATTTGTGTTTCTGAACTTTTTGTCTCGAAGAGAGTTAGCAGAG  1014

seq1  AAAAGACATTGGCAAATCAAGTCTACAAGTTTTAAGCTGGCAGACATAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACATTGGCAAATCAAGTCTACAAGTTTTAAGCTGGCAGACATAAG  1064

seq1  TTTTTTGCTAGTTCTTAAGGCAAAACATTGATTATGTGTTTGATGGTAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCTAGTTCTTAAGGCAAAACATTGATTATGTGTTTGATGGTAAT  1114

seq1  TTTTCCATCTTATTGCATTTTTCCAGCTTATTAA  1184
      ||||||||||||||||||||||||||||||||||
seq2  TTTTCCATCTTATTGCATTTTTCCAGCTTATTAA  1148


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