BAC Information

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BAC

Clone NameB6Ng01-177C10
Chromosome6 (Build37)
Map Location 119,675,097 - 119,789,267
singlet/doubletdoublet
Overlap geneErc1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177C10.bB6Ng01-177C10.g
ACCGA004502GA004503
length1,1081,214
definitionB6Ng01-177C10.b B6Ng01-177C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,675,097 - 119,676,218)(119,788,060 - 119,789,267)
sequence
gaattccaggatagccagggctacacagagaaaccctgtcttgaaaaacc
aaaaaaaaaaaaaaaaaaaaaaaaaaaaccaccaatttttatatggggaa
aatgttctatagacaaaggaataactgtatctacgtaggaaaacacattc
aacattataaaaaatgcaaatcaagcctacaagtagcacctcttataata
tatcatctcttgtaatggctataataaaaaaacaacagatagcaagtgtt
ggcgaggatgtggacaaaacagaatcctggtactgaagtaaccactatgg
aaatttttttggcagatcctcaaaaaacctaaaaacagtaccacatgagc
agcctagaggctgagatgaaagaacaggtcacaagcttgagaccaatctg
gcttacatagtgaatctcaggacagtttctactctatagtaagaccctga
accagtatatcctttaagaactgtgcgggcctgccatccagctgagcagg
aaggatcccaagtcagagcctgcctgacaacagagtgggttcaaggtcag
caaggacaacttagtgagactctgcctcaaaataaaaagtaggcctacct
atcagcatgcatcatggggaggagagagcttacagagccaccccctttgg
gaagctctgcgcgtgaggaggtaacgtctgctgagggagaggagtcaaga
ggaaacgctgcacgaaaggcactgacaacaagataaaaggtgtcctgtgg
tagaattcacaccactgaaaagacaacgcttcactttgtcatatgaggta
tttacaggtatctgccacagacaacacaataaaaacatcaccatcaaagg
aaataaagataacatttacatttgattttccaacttcataattttgtttt
agcatctccaaaattatagtagtctaccataataacaacacgagattgag
acttcacaattagaaagtcaagaactagatagtcagtttttatgagtgta
cagcttattttcaaactctttctagactttcaaatattatatacataaat
cctctcaccttttattctgaataatcagaatgccgggcagcttagtgagt
ctgtacca
gaattcactttgtagaccaggctggcctcgaactcagaaattcgactgcc
tctgcctcccgagtgctgggattaaaggcgtgtgccaccatgcccggtac
actatcaagttttaagtaggacacattatcaagtatgttttagaaggatg
ctcacaatgtagccagccttgaacttgcagtcctcttgtctttgcactgt
attgcgatcatattctaagtgtgtgccaccaacatgatttggtagttatt
aaactgtcattgttagtggttcaccaacgaatacaatgaatcccctgcat
tttttctagttttattgtggtatactatgtatgaataaacagttttacct
tgccattctttgaatatatcatcttaacttcccccattattattgtttat
ctgaaagccctttcattcagaattaaccagtgttctgtgagaaatgcttt
aggcttaacatttgtgatattatcgtgaggccattctagaaaataaaagt
tttaactttagatttcattttaatgtgtaatataatttaccctttagagt
agaaaaaatatgaactagagaagtagttgttgcacaagcacaaacacctc
agctatatcactagaacccatgtgaaaaagccaagcatggggccagtccc
tggggcttgctgtccagtcagcctagcctaatatgtgagctccaggccaa
atgaaagacttgtctcaaattataaggctcctgaggaatgatacctaaaa
tgacccctagtctagatgcatgcacacacatatgcactcacataaacaca
cagctgtatccacatgtatacatacaaacacacaaagatatttttatctt
atatatcatatataatatacactatctaaatttgataaaatactatatca
tatatactatttatgtattttatatatgatatactatacatcaaagatat
ttatatctattctaaaaataggatatttagaaaaaatatctaaaaaaatg
tgttgtttaacaaagtggtggataactaatcatcttctagatcaaatatt
aggacattgtcacccgtttagaagctttcggtacttatcacactaagttc
cactcctacttatcgagaacatagccactgttcttgacttatatgggacc
tatatcgtgaggccgccctttctgtatggaacgaattccacctgtcgccc
gcgtttaggaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119675097_119676218
seq2: B6Ng01-177C10.b_45_1152

seq1  GAATTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACC  50

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAACCACCAATTTTTATATGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAACCACCAATTTTTATATGGGGAA  100

seq1  AATGTTCTATAGACAAAGGAATAACTGTATCTACGTAGGAAAACACATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTATAGACAAAGGAATAACTGTATCTACGTAGGAAAACACATTC  150

seq1  AACATTATAAAAAATGCAAATCAAGCCTACAAGTAGCACCTCTTATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATAAAAAATGCAAATCAAGCCTACAAGTAGCACCTCTTATAATA  200

seq1  TATCATCTCTTGTAATGGCTATAATAAAAAAACAACAGATAGCAAGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTCTTGTAATGGCTATAATAAAAAAACAACAGATAGCAAGTGTT  250

seq1  GGCGAGGATGTGGACAAAACAGAATCCTGGTACTGAAGTAACCACTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGGATGTGGACAAAACAGAATCCTGGTACTGAAGTAACCACTATGG  300

seq1  AAATTTTTTTGGCAGATCCTCAAAAAACCTAAAAACAGTACCACATGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTTGGCAGATCCTCAAAAAACCTAAAAACAGTACCACATGAGC  350

seq1  AGCCTAGAGGCTGAGATGAAAGAACAGGTCACAAGCTTGAGACCAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGAGGCTGAGATGAAAGAACAGGTCACAAGCTTGAGACCAATCTG  400

seq1  GCTTACATAGTGAATCTCAGGACAGTTTCTACTCTATAGTAAGACCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATAGTGAATCTCAGGACAGTTTCTACTCTATAGTAAGACCCTGA  450

seq1  ACCAGTATATCCTTTAAGAACTGTGCGGGCCTGCCATCCAGCTGAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTATATCCTTTAAGAACTGTGCGGGCCTGCCATCCAGCTGAGCAGG  500

seq1  AAGGATCCCAAGTCAGAGCCTGCCTGACAACAGAGTGGGTTCAAGGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCCCAAGTCAGAGCCTGCCTGACAACAGAGTGGGTTCAAGGTCAG  550

seq1  CAAGGACAACTTAGTGAGACTCTGCCTCAAAATAAAAAGTAGGCCTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACAACTTAGTGAGACTCTGCCTCAAAATAAAAAGTAGGCCTACCT  600

seq1  ATCAGCATGCATCATGGGGAGGAGAGAGCTTACAGAGCCACCCCCTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATGCATCATGGGGAGGAGAGAGCTTACAGAGCCACCCCCTTTGG  650

seq1  GAAGCTCTGCGCGTGAGGAGGTAACGTCTGCTGAGGGAGAGGAGTCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCTGCGCGTGAGGAGGTAACGTCTGCTGAGGGAGAGGAGTCAAGA  700

seq1  GGAAACGCTGCACGAAAGGCACTGACAACAAGATAAAAGGTGTCCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACGCTGCACGAAAGGCACTGACAACAAGATAAAAGGTGTCCTGTGG  750

seq1  TAGAATTCACACCACTGAAAAGACAACGCTTCACTTTGTCATATGAGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCACACCACTGAAAAGACAACGCTTCACTTTGTCATATGAGGTA  800

seq1  TTTACAGGTATCTGCCACAGACAACACAATAAAAACATCACCATCAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGTATCTGCCACAGACAACACAATAAAAACATCACCATCAAAGG  850

seq1  AAATAAAGATAACATTTACATTTGATTTTCCAACTTCATAATTTTGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGATAACATTTACATTTGATTTTCCAACTTCATAATTTTGTTTT  900

seq1  AGCATCTCCAAAA-TATAGTAGTCTACCAATTAATAACAACAACGAGATT  949
      ||||||||||||| |||||||||||||||  |||||||||| ||||||||
seq2  AGCATCTCCAAAATTATAGTAGTCTACCA--TAATAACAAC-ACGAGATT  947

seq1  GGAGACTTCAC-ATTAGAAAAGTCAAAGAAACTAAGAATAGTTCAGTTTT  998
       |||||||||| ||||| ||||||||   |||||   |||| ||||||||
seq2  -GAGACTTCACAATTAG-AAAGTCAA--GAACTA--GATAG-TCAGTTTT  990

seq1  TATGAGTGGTACAGCTTATTTTCAAAACTCTTCTTAGACTTTTCACATAT  1048
      ||||||| ||||||||||||||| ||||||||  ||||| ||||| ||||
seq2  TATGAGT-GTACAGCTTATTTTC-AAACTCTTTCTAGAC-TTTCAAATAT  1037

seq1  TATATACATAAATTCCTCTCACTTTTTA-TCTGAGTTATTCCAGATGGCG  1097
      |||||||||||| ||||||||| ||||| ||||| | ||  ||||  || 
seq2  TATATACATAAA-TCCTCTCACCTTTTATTCTGAATAAT--CAGAATGC-  1083

seq1  CGGGCAGC-TAGTGATGTCTGTAGCA  1122
      |||||||| |||||| ||||||| ||
seq2  CGGGCAGCTTAGTGA-GTCTGTACCA  1108

seq1: chr6_119788060_119789267
seq2: B6Ng01-177C10.g_64_1277 (reverse)

seq1  AGCTTCCTAAATGCTGGGCTGACAGGTGGAATTTTCTGTCTCACTACAGA  50
      ||||||||||| || |||| |||||||||||||    || ||  ||||||
seq2  AGCTTCCTAAACGC-GGGC-GACAGGTGGAATT---CGT-TCCATACAGA  44

seq1  AGAGGCAGCCT-ACAGTATGAGTCCCATATAAGTC-AGGACAGTGGCTAT  98
      |  ||| |||| ||  |||  |||||||||||||| || |||||||||||
seq2  AAGGGCGGCCTCACGATATAGGTCCCATATAAGTCAAGAACAGTGGCTAT  94

seq1  G-TCTCGATAAAGTAGGAGTGG-ACT---AGTGATAAGTACCGAAAGCTT  143
      | ||||||| |||||||||||| |||    ||||||||||||||||||||
seq2  GTTCTCGAT-AAGTAGGAGTGGAACTTAGTGTGATAAGTACCGAAAGCTT  143

seq1  CTAAAACGGTGACAATGTCCTAATATTTGATCTAGAAGATGATAAGTATT  193
      |||||  |||||||||||||||||||||||||||||||||||| |||  |
seq2  CTAAACGGGTGACAATGTCCTAATATTTGATCTAGAAGATGATTAGTTAT  193

seq1  CCA-CACTTTGTT-AACAACACATTTGTTTTAGATA-TTTTTCTAAATAT  240
      ||| ||||||||| |||||||||||| ||||||||| |||||||||||||
seq2  CCACCACTTTGTTAAACAACACATTT-TTTTAGATATTTTTTCTAAATAT  242

seq1  -CTATATTTAG-ATAGATAT-AATATCTTTGATGTATAGTATATCATATA  287
       |||| ||||| |||||||| |||||||||||||||||||||||||||||
seq2  CCTATTTTTAGAATAGATATAAATATCTTTGATGTATAGTATATCATATA  292

seq1  T-AAATACATAAAATAGTATATATGATATAGTA-TATATCAAATTTAGAT  335
      | |||||||| |||||||||||||||||||||| | ||||||||||||||
seq2  TAAAATACAT-AAATAGTATATATGATATAGTATTTTATCAAATTTAGAT  341

seq1  AGTGTATATTATATATGATATATAAGATAAAAATATCTTTGTGTGTTTGT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATATTATATATGATATATAAGATAAAAATATCTTTGTGTGTTTGT  391

seq1  ATGTATACATGTGGATACAGCTGTGTGTTTATGTGAGTGCATATGTGTGT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACATGTGGATACAGCTGTGTGTTTATGTGAGTGCATATGTGTGT  441

seq1  GCATGCATCTAGACTAGGGGTCATTTTAGGTATCATTCCTCAGGAGCCTT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATCTAGACTAGGGGTCATTTTAGGTATCATTCCTCAGGAGCCTT  491

seq1  ATAATTTGAGACAAGTCTTTCATTTGGCCTGGAGCTCACATATTAGGCTA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGAGACAAGTCTTTCATTTGGCCTGGAGCTCACATATTAGGCTA  541

seq1  GGCTGACTGGACAGCAAGCCCCAGGGACTGGCCCCATGCTTGGCTTTTTC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTGGACAGCAAGCCCCAGGGACTGGCCCCATGCTTGGCTTTTTC  591

seq1  ACATGGGTTCTAGTGATATAGCTGAGGTGTTTGTGCTTGTGCAACAACTA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGTTCTAGTGATATAGCTGAGGTGTTTGTGCTTGTGCAACAACTA  641

seq1  CTTCTCTAGTTCATATTTTTTCTACTCTAAAGGGTAAATTATATTACACA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAGTTCATATTTTTTCTACTCTAAAGGGTAAATTATATTACACA  691

seq1  TTAAAATGAAATCTAAAGTTAAAACTTTTATTTTCTAGAATGGCCTCACG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGAAATCTAAAGTTAAAACTTTTATTTTCTAGAATGGCCTCACG  741

seq1  ATAATATCACAAATGTTAAGCCTAAAGCATTTCTCACAGAACACTGGTTA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCACAAATGTTAAGCCTAAAGCATTTCTCACAGAACACTGGTTA  791

seq1  ATTCTGAATGAAAGGGCTTTCAGATAAACAATAATAATGGGGGAAGTTAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATGAAAGGGCTTTCAGATAAACAATAATAATGGGGGAAGTTAA  841

seq1  GATGATATATTCAAAGAATGGCAAGGTAAAACTGTTTATTCATACATAGT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATATTCAAAGAATGGCAAGGTAAAACTGTTTATTCATACATAGT  891

seq1  ATACCACAATAAAACTAGAAAAAATGCAGGGGATTCATTGTATTCGTTGG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACAATAAAACTAGAAAAAATGCAGGGGATTCATTGTATTCGTTGG  941

seq1  TGAACCACTAACAATGACAGTTTAATAACTACCAAATCATGTTGGTGGCA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACTAACAATGACAGTTTAATAACTACCAAATCATGTTGGTGGCA  991

seq1  CACACTTAGAATATGATCGCAATACAGTGCAAAGACAAGAGGACTGCAAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTAGAATATGATCGCAATACAGTGCAAAGACAAGAGGACTGCAAG  1041

seq1  TTCAAGGCTGGCTACATTGTGAGCATCCTTCTAAAACATACTTGATAATG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCTGGCTACATTGTGAGCATCCTTCTAAAACATACTTGATAATG  1091

seq1  TGTCCTACTTAAAACTTGATAGTGTACCGGGCATGGTGGCACACGCCTTT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTACTTAAAACTTGATAGTGTACCGGGCATGGTGGCACACGCCTTT  1141

seq1  AATCCCAGCACTCGGGAGGCAGAGGCAGTCGAATTTCTGAGTTCGAGGCC  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTCGGGAGGCAGAGGCAGTCGAATTTCTGAGTTCGAGGCC  1191

seq1  AGCCTGGTCTACAAAGTGAATTC  1208
      |||||||||||||||||||||||
seq2  AGCCTGGTCTACAAAGTGAATTC  1214