BAC Information

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BAC

Clone NameB6Ng01-177M22
Chromosome6 (Build37)
Map Location 21,080,531 - 21,198,726
singlet/doubletdoublet
Overlap geneKcnd2
Upstream geneLOC100040838
Downstream geneLOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177M22.bB6Ng01-177M22.g
ACCGA004975GA004976
length1,128331
definitionB6Ng01-177M22.b B6Ng01-177M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,080,531 - 21,081,678)(21,198,396 - 21,198,726)
sequence
gaattcactggaggtttcataccaaccagagggttaaattacatcttctg
taggaatggttttttgaatgagcacttgaaacagtgtggatcatgtgaga
gtctcaggactgttgcttagagtgctgggtgtggatttacttttcacccc
ttaacttgaagaaaacatggagcttcatggaatgggcgggaccatcttgt
gatggtcagagtagaaagcatctgactggaccagtctgtagtgcaagaac
caattcatgctggtcagaatagagatcatctgaatagacctgaagctccc
tccccgcccactgcagatttcccttctctctccactgctctctccctgca
ccacattccctcctctctggcccattcccatcctcatcccaagtcccacc
taattctctctctccacctacctttattatctcttctattccccttttga
taaagactcaagcaccatctcttgggtcctccttatttggtttctttggg
tttgtggattgtagcataattatcttgtactttatggctaaatacccaat
tataagtgtgtacatatcatgcatgtcatttggggtctgtgttacctcac
tctggatgattttttttctagttccatccatttgcctgcaaaatccatga
tcttcttgtttcctttttttcccacatttttattagatattttcttcatt
tacatttcaaatgctatcccaaaagtcccttataccctccccctgccctt
ctcccctacccactcactcccacttcttggctctggcattcccctgtact
gggggcatataaagtttgctagaccaaagggcctctcttcccaatgatgg
ccatcattttgtatttttaattatggtcagtttgtgtttctctgtgataa
taagaagtcctttcttgtttatattgaacatttataaatcattagaagaa
gttttatgtaaactctgtcaatttttgaaaacatgagttttgcatattat
tatagatagtattgtaacagaccttatgactttcaatgccccctctctca
tgtggcttttctttctcagtgatagtaagatttgaacagtgaaaactata
gtaacattacatgttatacgaaatgcaa

catgactaaggctcattcagttagtaaagtctttgtcttgcaagaggatc
caagtttgatcacacaactcaggcaaagggggttggaaggtgggtactat
atgtagaggcaagcaggaccagacacatcgaggctcactaggcagcagct
tcatctgatttatgaatgccaaatctcaatgagagactctgtctcaaaaa
aattcacagaatatataaatcaaacaaacaaacgaacaaacaaaaacaaa
aacacacacaaaaaaggtagactgttgtctttaggaatgatacacaggat
tgccctgtgacaaccaaacactgctgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21080531_21081678
seq2: B6Ng01-177M22.b_47_1174

seq1  GAATTCACTGGAGGTTTCATACCAACCAGAGGGTTAAATTACATCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAGGTTTCATACCAACCAGAGGGTTAAATTACATCTTCTG  50

seq1  TAGGAATGGTTTTTTGAATGAGCACTTGAAACAGTGTGGATCATGTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGGTTTTTTGAATGAGCACTTGAAACAGTGTGGATCATGTGAGA  100

seq1  GTCTCAGGACTGTTGCTTAGAGTGCTGGGTGTGGATTTACTTTTCACCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGACTGTTGCTTAGAGTGCTGGGTGTGGATTTACTTTTCACCCC  150

seq1  TTAACTTGAAGAAAACATGGAGCTTCATGGAATGGGCGGGACCATCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGAAGAAAACATGGAGCTTCATGGAATGGGCGGGACCATCTTGT  200

seq1  GATGGTCAGAGTAGAAAGCATCTGACTGGACCAGTCTGTAGTGCAAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCAGAGTAGAAAGCATCTGACTGGACCAGTCTGTAGTGCAAGAAC  250

seq1  CAATTCATGCTGGTCAGAATAGAGATCATCTGAATAGACCTGAAGCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCATGCTGGTCAGAATAGAGATCATCTGAATAGACCTGAAGCTCCC  300

seq1  TCCCCGCCCACTGCAGATTTCCCTTCTCTCTCCACTGCTCTCTCCCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCCCACTGCAGATTTCCCTTCTCTCTCCACTGCTCTCTCCCTGCA  350

seq1  CCACATTCCCTCCTCTCTGGCCCATTCCCATCCTCATCCCAAGTCCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCCCTCCTCTCTGGCCCATTCCCATCCTCATCCCAAGTCCCACC  400

seq1  TAATTCTCTCTCTCCACCTACCTTTATTATCTCTTCTATTCCCCTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCTCTCTCCACCTACCTTTATTATCTCTTCTATTCCCCTTTTGA  450

seq1  TAAAGACTCAAGCACCATCTCTTGGGTCCTCCTTATTTGGTTTCTTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTCAAGCACCATCTCTTGGGTCCTCCTTATTTGGTTTCTTTGGG  500

seq1  TTTGTGGATTGTAGCATAATTATCTTGTACTTTATGGCTAAATACCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGATTGTAGCATAATTATCTTGTACTTTATGGCTAAATACCCAAT  550

seq1  TATAAGTGTGTACATATCATGCATGTCATTTGGGGTCTGTGTTACCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTGTGTACATATCATGCATGTCATTTGGGGTCTGTGTTACCTCAC  600

seq1  TCTGGATGATTTTTTTTCTAGTTCCATCCATTTGCCTGCAAAATCCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATGATTTTTTTTCTAGTTCCATCCATTTGCCTGCAAAATCCATGA  650

seq1  TCTTCTTGTTTCCTTTTTTTCCCACATTTTTATTAGATATTTTCTTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTTTCCTTTTTTTCCCACATTTTTATTAGATATTTTCTTCATT  700

seq1  TACATTTCAAATGCTATCCCAAAAGTCCCTTATACCCTCCCCCTGCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAAATGCTATCCCAAAAGTCCCTTATACCCTCCCCCTGCCCTT  750

seq1  CTCCCCTACCCACTCACTCCCACTTCTTGGCTCTGGCATTCCCCTGTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTACCCACTCACTCCCACTTCTTGGCTCTGGCATTCCCCTGTACT  800

seq1  -GGGGCATATAAAGTTTGCTAGACCAAGGGGCCTCTCTTCCCAATGATGG  849
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGGGCATATAAAGTTTGCTAGACCAAAGGGCCTCTCTTCCCAATGATGG  850

seq1  CCATCATTTTGTATTTTTAATTATGGTCAGTTTGTGTTTCTCTGTGATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTTTGTATTTTTAATTATGGTCAGTTTGTGTTTCTCTGTGATAA  900

seq1  TAAGAAGTCCTTTCTTGTTTATATTGAACATTTATAAATCATTAGAAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTCCTTTCTTGTTTATATTGAACATTTATAAATCATTAGAAGAA  950

seq1  GTTTTATGTAAACTCTGTCAATTTTTGAAAAACATTGAGTTTTGCATA-T  998
      ||||||||||||||||||||||||||| |||||| ||||||||||||| |
seq2  GTTTTATGTAAACTCTGTCAATTTTTG-AAAACA-TGAGTTTTGCATATT  998

seq1  ATTATAGATAGTATTTGTAACAGA-CTTATGACTTTCAAATGCCCCCTCT  1047
      ||||||||||||| |||||||||| |||||||||||| ||||||||||||
seq2  ATTATAGATAGTA-TTGTAACAGACCTTATGACTTTC-AATGCCCCCTCT  1046

seq1  CTCCATGTGGGTTTTTCTTTCCTCAGTTGATAGTATAGATATTGAACAAA  1097
      || ||||| || |||||||| ||||| |||||||| |||| ||||||  |
seq2  CT-CATGT-GGCTTTTCTTT-CTCAG-TGATAGTA-AGAT-TTGAAC--A  1088

seq1  GTGAAAAACTATTAAGTAACAATTACATGTTAATAACCAGAAAAAATGCA  1147
      ||| ||||||||  |||||| ||||||||||       | |  |||||||
seq2  GTG-AAAACTAT--AGTAAC-ATTACATGTT-------ATACGAAATGCA  1127

seq1  A  1148
      |
seq2  A  1128


seq1: chr6_21198396_21198726
seq2: B6Ng01-177M22.g_72_402 (reverse)

seq1  ACACACAGCAGTGTTTGGTTGTCACAGGGCAATCCTGTGTATCATTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGCAGTGTTTGGTTGTCACAGGGCAATCCTGTGTATCATTCCTA  50

seq1  AAGACAACAGTCTACCTTTTTTGTGTGTGTTTTTGTTTTTGTTTGTTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACAGTCTACCTTTTTTGTGTGTGTTTTTGTTTTTGTTTGTTCGT  100

seq1  TTGTTTGTTTGATTTATATATTCTGTGAATTTTTTTGAGACAGAGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGATTTATATATTCTGTGAATTTTTTTGAGACAGAGTCTCT  150

seq1  CATTGAGATTTGGCATTCATAAATCAGATGAAGCTGCTGCCTAGTGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGATTTGGCATTCATAAATCAGATGAAGCTGCTGCCTAGTGAGCC  200

seq1  TCGATGTGTCTGGTCCTGCTTGCCTCTACATATAGTACCCACCTTCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGTGTCTGGTCCTGCTTGCCTCTACATATAGTACCCACCTTCCAAC  250

seq1  CCCCTTTGCCTGAGTTGTGTGATCAAACTTGGATCCTCTTGCAAGACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGCCTGAGTTGTGTGATCAAACTTGGATCCTCTTGCAAGACAAA  300

seq1  GACTTTACTAACTGAATGAGCCTTAGTCATG  331
      |||||||||||||||||||||||||||||||
seq2  GACTTTACTAACTGAATGAGCCTTAGTCATG  331


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