BAC Information

Click to search

BAC

Clone NameB6Ng01-177M23
Chromosome6 (Build37)
Map Location 103,517,947 - 103,652,528
singlet/doubletdoublet
Overlap geneChl1
Upstream geneLOC666141
Downstream geneLOC100043345, Cntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177M23.bB6Ng01-177M23.g
ACCGA004977GA004978
length1,0981,115
definitionB6Ng01-177M23.b B6Ng01-177M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,517,947 - 103,519,057)(103,651,407 - 103,652,528)
sequence
gaattccgtttctcaactaaaaataacaagctgagttggaaattgaggtg
caagcactgtacaatcaagtgttgaaaagtcagcctctacaacaacgaga
ttttcattcaccacaatccatgaagaccactaagaaaaatggaggggttt
ctttatgaaacatagcgtatgagccgcagagatatcttatccagtaaaat
gttttctgcacaagtatgagggcttgaaatcaatccacagcacccactaa
aattctaggcatgatcgagctcacctttaaatctagcgcctgaggaagag
gaagagataagggaatccttggagattgctggccagcctgtcttgcataa
tcagctagcccagagtgatactctgtctcacaataaatgtagacagtacc
tgaagaccaacacctgatgctgacttctggcctctcctgcacacacacat
acaaacacatacacacacacacacacacacacacacacacacacaagtat
aagtaaataaaatatgagattgattttgtaggttcagaataaattgtgtt
ttatttttagatgtagtaaagtgaaaattatttctctattccttgtttat
ttaaatatgcaaatattcactttcactggaaccttttttgatgctatcct
ttacttacattattgttttagcttggcaaagttcgctttggataatgaaa
attttgtataatgtcttgtcactgacacttgtggagaaagaaacccttat
gcatgcctttatcttttgcatgttttacatttttcatatttgtaatcctc
acctttaaaatctgcatggtgagtatactaaaacttaggactttacactt
aaggaatacaagttaaacacattcagtaggaagctcccttgttggtctgc
ttaaattatgggttagatgacaagaggttgtgttccaggagagcatctgt
gtttatttagtgaaagttagatctcagtccatggcagttttccggcacaa
tacaacccacactgactgagcacatagacgtaccatgattagctgctaaa
ctggtcaatattttctggactgtctcactcatacagcatgaatgatat

gaattcaaagagtggtttgctttagggacatttgctggcgatatatttct
atagtgtgcggaagaagtcttagtgtctaagtctaaagctgagaaaagac
gaggttgtcatcagaatcagaaataaatgtctaacagactatatatgtct
cctattatcttttgcatatggtgaccatatgatggaaggtttttttttta
ctatattttaattgtgaaagtatctaaaatattagagattaaatactaga
aaattgaaatttctcataacagattccatctagatcaatttgtcattaat
tcaagttctagaattagaccccgttttaaactcattcctttttgtttgtt
ctttagttctttgggttgagaacaagctcttattcatttgaggcaagcac
tctaccagggaggtaccagtgaggtaccaataaactaccagtgagctatc
agtgagcaaaatcgctaaatctatttacagccaatccaaccactgtggtc
ctaaaacactgaaaataacccaaaaatgtagcttgattcccccaatctta
tttcattgttcttaaaaaaaatagttgtgtcaatagagttagcaagccaa
cttaaaatgaataaaaagtaccaaagaaaaacagattaactaacaaatta
atacacacctcccattttataatcatttccttgggttgagatgcttgaac
tctgatgttctggggattcttgtctggagctgagaaatgacaaacactaa
aatcattttttttttacttcatagtaaccagttggcttaatatataacac
ccaaccccatcaaaagccaaataattaaatattttgcattatttattaaa
ttcaagtttctaagaagatttaagatagctttgcagaataaaattttatt
aagaggagtggggatagaattcttagagctctacagtgatgatgttggtg
aatatatatgatttatttgcagatatctgaaattaagcctgatagtaaat
tagagctgtttttagaaccattttatttccatactgtactccctgtcacc
actaatgaagtagtaacatgtgattagtctctagaggaattgaatctctg
aaccatttatgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103517947_103519057
seq2: B6Ng01-177M23.b_45_1142

seq1  GAATTCCGTTTCTCAACTAAAAATAACAAGCTGAGTTGGAAATTGAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTTTCTCAACTAAAAATAACAAGCTGAGTTGGAAATTGAGGTG  50

seq1  CAAGCACTGTACAATCAAGTGTTGAAAAGTCAGCCTCTACAACAACGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTGTACAATCAAGTGTTGAAAAGTCAGCCTCTACAACAACGAGA  100

seq1  TTTTCATTCACCACAATCCATGAAGACCACTAAGAAAAATGGAGGGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCACCACAATCCATGAAGACCACTAAGAAAAATGGAGGGGTTT  150

seq1  CTTTATGAAACATAGCGTATGAGCCGCAGAGATATCTTATCCAGTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGAAACATAGCGTATGAGCCGCAGAGATATCTTATCCAGTAAAAT  200

seq1  GTTTTCTGCACAAGTATGAGGGCTTGAAATCAATCCACAGCACCCACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGCACAAGTATGAGGGCTTGAAATCAATCCACAGCACCCACTAA  250

seq1  AATTCTAGGCATGATCGAGCTCACCTTTAAATCTAGCGCCTGAGGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGGCATGATCGAGCTCACCTTTAAATCTAGCGCCTGAGGAAGAG  300

seq1  GAAGAGATAAGGGAATCCTTGGAGATTGCTGGCCAGCCTGTCTTGCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATAAGGGAATCCTTGGAGATTGCTGGCCAGCCTGTCTTGCATAA  350

seq1  TCAGCTAGCCCAGAGTGATACTCTGTCTCACAATAAATGTAGACAGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAGCCCAGAGTGATACTCTGTCTCACAATAAATGTAGACAGTACC  400

seq1  TGAAGACCAACACCTGATGCTGACTTCTGGCCTCTCCTGCACACACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCAACACCTGATGCTGACTTCTGGCCTCTCCTGCACACACACAT  450

seq1  ACAAACACATACACACACACACACACACACACACACACACACACAAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACATACACACACACACACACACACACACACACACACACAAGTAT  500

seq1  AAGTAAATAAAATATGAGATTGATTTTGTAGGTTCAGAATAAATTGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATAAAATATGAGATTGATTTTGTAGGTTCAGAATAAATTGTGTT  550

seq1  TTATTTTTAGATGTAGTAAAGTGAAAATTATTTCTCTATTCCTTGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAGATGTAGTAAAGTGAAAATTATTTCTCTATTCCTTGTTTAT  600

seq1  TTAAATATGCAAATATTCACTTTCACTGGAACCTTTTTTGATGCTATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGCAAATATTCACTTTCACTGGAACCTTTTTTGATGCTATCCT  650

seq1  TTACTTACATTATTGTTTTAGCTTGGCAAAGTTCGCTTTGGATAATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACATTATTGTTTTAGCTTGGCAAAGTTCGCTTTGGATAATGAAA  700

seq1  ATTTTGTATAATGTCTTGTCACTGACACTTGTGGAGAAAGAAACCCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATAATGTCTTGTCACTGACACTTGTGGAGAAAGAAACCCTTAT  750

seq1  GCATGCCTTTATCTTTTGCATGTTTTACATTTTTCATATTTGTAATCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTTTATCTTTTGCATGTTTTACATTTTTCATATTTGTAATCCTC  800

seq1  ACCTTTAAAATCTGCATGGTGAGTATACTAAAACTTAGGACTTTACACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAAAATCTGCATGGTGAGTATACTAAAACTTAGGACTTTACACTT  850

seq1  AAGGAATACAAGTTAAACACATTCAGTAGGAAGCTCCCTTGTTGGTCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATACAAGTTAAACACATTCAGTAGGAAGCTCCCTTGTTGGTCTGC  900

seq1  TTAAATTATGGGTTAGATGAACAAGAGGTTGTGTTCCAGGAGAGCATCTG  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAAATTATGGGTTAGATG-ACAAGAGGTTGTGTTCCAGGAGAGCATCTG  949

seq1  TGTTTATTTAGTGAAAGTTAGATCTCAGTCCATGGCAGGTTTTCCGGCAC  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTTATTTAGTGAAAGTTAGATCTCAGTCCATGGCA-GTTTTCCGGCAC  998

seq1  AATACAAACCCACACCTGAACTGAAGCACATAGACCGTACCATGAATTAG  1050
      ||||| |||||||| ||| |||| |||||||||| ||||||||| |||||
seq2  AATAC-AACCCACA-CTG-ACTG-AGCACATAGA-CGTACCATG-ATTAG  1042

seq1  CCTTGCTTAAACTGGTCAATTATTTTCT-GACTGTCTCACTCATTACAGC  1099
      |  ||| |||||||||||| |||||||| |||||||||||||| ||||||
seq2  C--TGC-TAAACTGGTCAA-TATTTTCTGGACTGTCTCACTCA-TACAGC  1087

seq1  ATTAAATGATAT  1111
      | | ||||||||
seq2  A-TGAATGATAT  1098


seq1: chr6_103651407_103652528
seq2: B6Ng01-177M23.g_68_1182 (reverse)

seq1  GACACATAAA--GTTC--AGATTC-ATTCTTCTATGAGCATATATTCACA  45
      ||||||||||  ||||  |||||| |||| |||| |||    || |||||
seq2  GACACATAAATGGTTCAGAGATTCAATTCCTCTA-GAG--ACTAATCACA  47

seq1  GTGTATACTTCTCTCAATAATTGTGACAGAGAAGTACAGTATGAAAATAA  95
       ||| |||| || ||| || | ||||||| | ||||||||||| ||||||
seq2  -TGT-TACTACT-TCATTAGTGGTGACAG-GGAGTACAGTATGGAAATAA  93

seq1  AAATATGTTTCTTAAAAACAAGCTTCTAATTTTAACTATCAGGCTTAAAT  145
      |   ||| ||| ||||||| ||| ||||||||  |||||||||||| |||
seq2  A---ATGGTTC-TAAAAAC-AGC-TCTAATTT--ACTATCAGGCTT-AAT  134

seq1  TTCAGATATCTGC-AATAAATCATATATATTCCACCACATCATCACTGTA  194
      ||||||||||||| ||||||||||||||||||  | ||||||||||||||
seq2  TTCAGATATCTGCAAATAAATCATATATATTCACCAACATCATCACTGTA  184

seq1  GAGCTCTAAGAATTCTAT-CTCACTCCTCTTAATAAAA-TTTATTCTGCA  242
      |||||||||||||||||| | ||||||||||||||||| |||||||||||
seq2  GAGCTCTAAGAATTCTATCCCCACTCCTCTTAATAAAATTTTATTCTGCA  234

seq1  AAGCTATCTTAAATCTTCTTAGAAACTTGAATTTAATAAATAATGCAAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATCTTAAATCTTCTTAGAAACTTGAATTTAATAAATAATGCAAAA  284

seq1  TATTTAATTATTTGGCTTTTGATGGGGTTGGGTGTTATATATTAAGCCAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTATTTGGCTTTTGATGGGGTTGGGTGTTATATATTAAGCCAA  334

seq1  CTGGTTACTATGAAGT-AAAAAAAAATGATTTTAGTGTTTGTCATTTCTC  391
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGGTTACTATGAAGTAAAAAAAAAATGATTTTAGTGTTTGTCATTTCTC  384

seq1  AGCTCCAGACAAGAATCCCCAGAACATCAGAGTTCAAGCATCTCAACCCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGACAAGAATCCCCAGAACATCAGAGTTCAAGCATCTCAACCCA  434

seq1  AGGAAATGATTATAAAATGGGAGGTGTGTATTAATTTGTTAGTTAATCTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGATTATAAAATGGGAGGTGTGTATTAATTTGTTAGTTAATCTG  484

seq1  TTTTTCTTTGGTACTTTTTATTCATTTTAAGTTGGCTTGCTAACTCTATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTGGTACTTTTTATTCATTTTAAGTTGGCTTGCTAACTCTATT  534

seq1  GACACAACTATTTTTTTTAAGAACAATGAAATAAGATTGGGGGAATCAAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAACTATTTTTTTTAAGAACAATGAAATAAGATTGGGGGAATCAAG  584

seq1  CTACATTTTTGGGTTATTTTCAGTGTTTTAGGACCACAGTGGTTGGATTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTTGGGTTATTTTCAGTGTTTTAGGACCACAGTGGTTGGATTG  634

seq1  GCTGTAAATAGATTTAGCGATTTTGCTCACTGATAGCTCACTGGTAGTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAATAGATTTAGCGATTTTGCTCACTGATAGCTCACTGGTAGTTT  684

seq1  ATTGGTACCTCACTGGTACCTCCCTGGTAGAGTGCTTGCCTCAAATGAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTACCTCACTGGTACCTCCCTGGTAGAGTGCTTGCCTCAAATGAAT  734

seq1  AAGAGCTTGTTCTCAACCCAAAGAACTAAAGAACAAACAAAAAGGAATGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTGTTCTCAACCCAAAGAACTAAAGAACAAACAAAAAGGAATGA  784

seq1  GTTTAAAACGGGGTCTAATTCTAGAACTTGAATTAATGACAAATTGATCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAACGGGGTCTAATTCTAGAACTTGAATTAATGACAAATTGATCT  834

seq1  AGATGGAATCTGTTATGAGAAATTTCAATTTTCTAGTATTTAATCTCTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAATCTGTTATGAGAAATTTCAATTTTCTAGTATTTAATCTCTAA  884

seq1  TATTTTAGATACTTTCACAATTAAAATATAGTAAAAAAAAAACCTTCCAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGATACTTTCACAATTAAAATATAGTAAAAAAAAAACCTTCCAT  934

seq1  CATATGGTCACCATATGCAAAAGATAATAGGAGACATATATAGTCTGTTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGTCACCATATGCAAAAGATAATAGGAGACATATATAGTCTGTTA  984

seq1  GACATTTATTTCTGATTCTGATGACAACCTCGTCTTTTCTCAGCTTTAGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTATTTCTGATTCTGATGACAACCTCGTCTTTTCTCAGCTTTAGA  1034

seq1  CTTAGACACTAAGACTTCTTCCGCACACTATAGAAATATATCGCCAGCAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACACTAAGACTTCTTCCGCACACTATAGAAATATATCGCCAGCAA  1084

seq1  ATGTCCCTAAAGCAAACCACTCTTTGAATTC  1122
      |||||||||||||||||||||||||||||||
seq2  ATGTCCCTAAAGCAAACCACTCTTTGAATTC  1115


| Home | SequenceCutter | Blast | Download |