BAC Information

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BAC

Clone NameB6Ng01-178K10
Chromosome6 (Build37)
Map Location 130,259,281 - 130,359,287
singlet/doubletdoublet
Overlap geneKlra12, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436
Upstream gene4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra10, Klra13
Downstream geneEG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178K10.bB6Ng01-178K10.g
ACCGA005578GA005579
length1,1611,126
definitionB6Ng01-178K10.b B6Ng01-178K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,259,281 - 130,260,449)(130,358,138 - 130,359,287)
sequence
gaattcctgctaaaaaggtgtttcagtcagctgatttaaagtacagaaag
gtgaggttgatgtcatgccatgggtcataagactatttcttaccagaggc
taactctagccctttaagtaacctgtgtcagaactaacatcctttgatta
gtagataaaaacttcatgaaatctatgaacatatctgactactaaaatcc
atttacctgaaggcttagaatgtcttctgatgacctgtggcaaatcttgt
atctttctgcaatcacctctctgttgtacaaacaaatgtataataaaatt
gtccttatttatgattttctacatccttcaaaacctcaaaactttatgaa
attggttctacatttgaacatggaaccatgatctcttaaaatttttccag
aacacactatcatttattccttttaaggtgaaagctggattttgcatcag
tagaccttatttgaacacccttgctgtgaaacattgttactgaagttgca
cattctagtgatgattcacatgctggatacattagacacttcactgggat
tgagggtacagttcagggtagggcatgtacagagtcttgacctcatacac
cacagtaatcataatagcaacaataataatacaaatgatgatgatagtaa
caaaaacaatgataataataacagaataaagagaggaagtaaaagactat
ttgatttcaatagtatattgctatgagcttaccaattttaaaatatgttc
acaactttcaaaaattttattttcatttgattgtaggttttccaactggc
tggcttgtttttcatgaaaacaatttgaattgttctttactcaagagaca
gtgattaaccacacactgggaaattgtggatggctcaagactagaagagg
aactgaagatacactgtcaagcctgatgcctaatagagtaggtaggaggg
gaccacctgcttttctctttcattactaaactaaaattcagccaggcttg
aattataaataactcatggccttctttagtcttttctttcactccacttc
aatttcttttctccagttaataaactatcatgtgcctatcaatagacagg
gctgcctgctcctaattgacaggtctggtctcttaatgttttattttata
gatgtatgaaa
gaattcacattgtaatgttgtcttctggagacatgcaccttagcttgcca
gtgtcaccccaagagcagtaataaataataacaattttgaaaaagaattt
tgtattggaaagattctttttgaccaagaaataagactaaaagtaagtaa
acacagaaaacttcatgaagagagagagagaaaaaaaattatagaagaat
gatgtaacatgtcccatgtccagctttttcctcttattttctactggctc
tcctctcaggtattaatgtaagtgtaaggtcagttacaaatacatactat
ttactgatacagtcatacctattatcagattgtatctttcatgggcatta
gctcatttatgctgcatggtgacatttattttcatatatcctcctgtagc
aatatcatgtatgaatatattatatgtaacaggattatgtacatgggatg
atttgagattaaaacttcatattgtatcctctatgcttcgctatgatatt
tccacaccctacccagtaatatccccattttactttcatggttgctgaag
ttacagaagtgaagattttgatccaagaacctcagatgagagagaatatt
cagcattcccttctaggtctggattagtcagtgggaactctcccagttga
atccatttacaaagtacaaccatggatcagatggtgtagactatggctgg
gtggagacattgatcatctcagctgattggggtttcaacctgaaagatat
gtatttgtcttagatcacctgcagtattaaccttcaaatattcctttgaa
ggtagtgtctggaaatctcaaagagtcatgtataaataaaaagagtgaaa
gatcactcaatattcatgcatttatcaaaatgtgtaaataattttaagac
acagttttatttatttccaaagtcttgactctttgttatttgaataggtt
gtttacaatttttcaatgattttcagtgttccaatttctaccatttttaa
catgctgaatattgtataaactgactatgtcaatatcatatgactcaatt
gtattttattctttcatattctaaaatattctatacatagaaattaagaa
ccttatagaatctggcacagttctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130259281_130260449
seq2: B6Ng01-178K10.b_31_1191

seq1  GAATTCCTGCTAAAAAGGTGTTTCAGTCAGCTGATTTAAAGTACAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTAAAAAGGTGTTTCAGTCAGCTGATTTAAAGTACAGAAAG  50

seq1  GTGAGGTTGATGTCATGCCATGGGTCATAAGACTATTTCTTACCAGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTGATGTCATGCCATGGGTCATAAGACTATTTCTTACCAGAGGC  100

seq1  TAACTCTAGCCCTTTAAGTAACCTGTGTCAGAACTAACATCCTTTGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTAGCCCTTTAAGTAACCTGTGTCAGAACTAACATCCTTTGATTA  150

seq1  GTAGATAAAAACTTCATGAAATCTATGAACATATCTGACTACTAAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAAAAACTTCATGAAATCTATGAACATATCTGACTACTAAAATCC  200

seq1  ATTTACCTGAAGGCTTAGAATGTCTTCTGATGACCTGTGGCAAATCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTGAAGGCTTAGAATGTCTTCTGATGACCTGTGGCAAATCTTGT  250

seq1  ATCTTTCTGCAATCACCTCTCTGTTGTACAAACAAATGTATAATAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGCAATCACCTCTCTGTTGTACAAACAAATGTATAATAAAATT  300

seq1  GTCCTTATTTATGATTTTCTACATCCTTCAAAACCTCAAAACTTTATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTATTTATGATTTTCTACATCCTTCAAAACCTCAAAACTTTATGAA  350

seq1  ATTGGTTCTACATTTGAACATGGAACCATGATCTCTTAAAATTTTTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTCTACATTTGAACATGGAACCATGATCTCTTAAAATTTTTCCAG  400

seq1  AACACACTATCATTTATTCCTTTTAAGGTGAAAGCTGGATTTTGCATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTATCATTTATTCCTTTTAAGGTGAAAGCTGGATTTTGCATCAG  450

seq1  TAGACCTTATTTGAACACCCTTGCTGTGAAACATTGTTACTGAAGTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTTATTTGAACACCCTTGCTGTGAAACATTGTTACTGAAGTTGCA  500

seq1  CATTCTAGTGATGATTCACATGCTGGATACATTAGACACTTCACTGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGTGATGATTCACATGCTGGATACATTAGACACTTCACTGGGAT  550

seq1  TGAGGGTACAGTTCAGGGTAGGGCATGTACAGAGTCTTGACCTCATACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTACAGTTCAGGGTAGGGCATGTACAGAGTCTTGACCTCATACAC  600

seq1  CACAGTAATCATAATAGCAACAATAATAATACAAATGATGATGATAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAATCATAATAGCAACAATAATAATACAAATGATGATGATAGTAA  650

seq1  CAAAAACAATGATAATAATAACAGAATAAAGAGAGGAAGTAAAAGACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAATGATAATAATAACAGAATAAAGAGAGGAAGTAAAAGACTAT  700

seq1  TTGATTTCAATAGTATATTGCTATGAGCTTACCAATTTTAAAATATGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCAATAGTATATTGCTATGAGCTTACCAATTTTAAAATATGTTC  750

seq1  ACAACTTTCAAAAATTTTATTTTCATTTGATTGTAGGTTTTCCAACTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCAAAAATTTTATTTTCATTTGATTGTAGGTTTTCCAACTGGC  800

seq1  TGGCTTGTTTTTCATGAAAACAATTTGAATTGTTCTTTAACTCAAGAGAC  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGCTTGTTTTTCATGAAAACAATTTGAATTGTTCTTT-ACTCAAGAGAC  849

seq1  AGTGATTAACCACACACTGGGAAATTGTGGATGGCTCAAGACTAGAAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTAACCACACACTGGGAAATTGTGGATGGCTCAAGACTAGAAGAG  899

seq1  GAACTGAAGATACACTGTCAAGCCTGATGCCTAATAGAGTAGGTAGGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAGATACACTGTCAAGCCTGATGCCTAATAGAGTAGGTAGGAGG  949

seq1  GGACCACCTGCTTTTCTCTTCCATTACTAAACTAAATTCCAGCCAGCCTT  1000
      |||||||||||||||||||| ||||||||||||||| | ||||||| |||
seq2  GGACCACCTGCTTTTCTCTTTCATTACTAAACTAAAATTCAGCCAGGCTT  999

seq1  GAATTATAAAT-ACTCAGTGGCTTCTTTAGTTCTTTCTTTCACTCCACCT  1049
      ||||||||||| |||||  | ||||||||||  |||||||||||||| ||
seq2  GAATTATAAATAACTCATGGCCTTCTTTAGTCTTTTCTTTCACTCCA-CT  1048

seq1  CCATTTTCTTTTCTCCCAGTTTATAAACTATTCATGTGCTTATCAATAGA  1099
       || |||||||||| |||||| |||||||| |||||||| ||||||||||
seq2  TCAATTTCTTTTCT-CCAGTTAATAAACTA-TCATGTGCCTATCAATAGA  1096

seq1  CAGTGTTGCCTGCTTCTTATATGACCAAGGTCT-GTCTCCTTAAATTGTT  1148
      ||| | |||||||| || || ||||  |||||| |||| |||||  ||||
seq2  CAGGGCTGCCTGCTCCTAAT-TGAC--AGGTCTGGTCT-CTTAA--TGTT  1140

seq1  TATTTTTATAGATGTATGAAA  1169
      |  ||||||||||||||||||
seq2  TTATTTTATAGATGTATGAAA  1161

seq1: chr6_130358138_130359287
seq2: B6Ng01-178K10.g_61_1186 (reverse)

seq1  GGAGAAACCCTGTG-CAGATTTCTATTAAAGTTCTTTATATTTCTAATGG  49
      ||||||   ||||| |||| ||||| ||| ||||||   |||||| ||| 
seq2  GGAGAA---CTGTGCCAGA-TTCTA-TAAGGTTCTT--AATTTCT-ATG-  41

seq1  TTATAGAATTAATTTTTAGGAAATATGAAAAGAAATAAAAAATTACAAAT  99
       ||||||||    ||||||  |||||||||   |||||||   ||||| |
seq2  -TATAGAAT---ATTTTAG--AATATGAAA--GAATAAAA---TACAATT  80

seq1  GAGTCATTATGATATTGACATAGTCAGTTTTATACAATATTCAGCATG-T  148
      |||||| |||||||||||||||||||| |||||||||||||||||||| |
seq2  GAGTCA-TATGATATTGACATAGTCAG-TTTATACAATATTCAGCATGTT  128

seq1  AAAAATGGTAGGAAAATTGGAACCACTGAAAATCATTGAAAAATTGTAAA  198
      |||||||||||  ||||||||| |||||||||||||||||||||||||||
seq2  AAAAATGGTAG--AAATTGGAA-CACTGAAAATCATTGAAAAATTGTAAA  175

seq1  CAACCTATTCAAATAACAAAGAGTCAAGACTTTGGAAATAAATAAAACTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTATTCAAATAACAAAGAGTCAAGACTTTGGAAATAAATAAAACTG  225

seq1  TTGTCTTAAAATTATTTACACATTTTGATAAATGCATGAATATTGAGTGA  298
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTCTTAAAATTATTTACACATTTTGATAAATGCATGAATATTGAGTGA  274

seq1  TCTTTCACTCTTTTTATTTATACATGACTCTTTGAGATTTCCAGACACTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACTCTTTTTATTTATACATGACTCTTTGAGATTTCCAGACACTA  324

seq1  CCTTCAAAGGAATATTTGAAGGTTAATACTGCAGGTGATCTAAGACAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAGGAATATTTGAAGGTTAATACTGCAGGTGATCTAAGACAAAT  374

seq1  ACATATCTTTCAGGTTGAAACCCCAATCAGCTGAGATGATCAATGTCTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTTTCAGGTTGAAACCCCAATCAGCTGAGATGATCAATGTCTCC  424

seq1  ACCCAGCCATAGTCTACACCATCTGATCCATGGTTGTACTTTGTAAATGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCATAGTCTACACCATCTGATCCATGGTTGTACTTTGTAAATGG  474

seq1  ATTCAACTGGGAGAGTTCCCACTGACTAATCCAGACCTAGAAGGGAATGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTGGGAGAGTTCCCACTGACTAATCCAGACCTAGAAGGGAATGC  524

seq1  TGAATATTCTCTCTCATCTGAGGTTCTTGGATCAAAATCTTCACTTCTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTCTCTCTCATCTGAGGTTCTTGGATCAAAATCTTCACTTCTGT  574

seq1  AACTTCAGCAACCATGAAAGTAAAATGGGGATATTACTGGGTAGGGTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGCAACCATGAAAGTAAAATGGGGATATTACTGGGTAGGGTGTG  624

seq1  GAAATATCATAGCGAAGCATAGAGGATACAATATGAAGTTTTAATCTCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCATAGCGAAGCATAGAGGATACAATATGAAGTTTTAATCTCAA  674

seq1  ATCATCCCATGTACATAATCCTGTTACATATAATATATTCATACATGATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCCATGTACATAATCCTGTTACATATAATATATTCATACATGATA  724

seq1  TTGCTACAGGAGGATATATGAAAATAAATGTCACCATGCAGCATAAATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAGGAGGATATATGAAAATAAATGTCACCATGCAGCATAAATGA  774

seq1  GCTAATGCCCATGAAAGATACAATCTGATAATAGGTATGACTGTATCAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGCCCATGAAAGATACAATCTGATAATAGGTATGACTGTATCAGT  824

seq1  AAATAGTATGTATTTGTAACTGACCTTACACTTACATTAATACCTGAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTATGTATTTGTAACTGACCTTACACTTACATTAATACCTGAGAG  874

seq1  GAGAGCCAGTAGAAAATAAGAGGAAAAAGCTGGACATGGGACATGTTACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCAGTAGAAAATAAGAGGAAAAAGCTGGACATGGGACATGTTACA  924

seq1  TCATTCTTCTATAATTTTTTTTCTCTCTCTCTCTTCATGAAGTTTTCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCTATAATTTTTTTTCTCTCTCTCTCTTCATGAAGTTTTCTGT  974

seq1  GTTTACTTACTTTTAGTCTTATTTCTTGGTCAAAAAGAATCTTTCCAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTACTTTTAGTCTTATTTCTTGGTCAAAAAGAATCTTTCCAATA  1024

seq1  CAAAATTCTTTTTCAAAATTGTTATTATTTATTACTGCTCTTGGGGTGAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCTTTTTCAAAATTGTTATTATTTATTACTGCTCTTGGGGTGAC  1074

seq1  ACTGGCAAGCTAAGGTGCATGTCTCCAGAAGACAACATTACAATGTGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAAGCTAAGGTGCATGTCTCCAGAAGACAACATTACAATGTGAAT  1124

seq1  TC  1150
      ||
seq2  TC  1126