BAC Information

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BAC

Clone NameB6Ng01-179M18
Chromosome6 (Build37)
Map Location 62,242,607 - 62,359,260
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneLOC100041764, LOC100042694
Downstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179M18.bB6Ng01-179M18.g
ACCGA006418GA006419
length1,1241,123
definitionB6Ng01-179M18.b B6Ng01-179M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,242,607 - 62,243,723)(62,358,148 - 62,359,260)
sequence
gaattcagttttacagttgtagtcatattcccatgatgttccctagtatc
tgacatactcacctcacgactcaccacttatgcaaaccctcatcatccac
ttacatgccccaaaatacttgtgccatatatatatgtccatacccagaat
attatatgcttatactgtccttttcttgtctacctctaatacctctagta
atgctattttgtcaaagtaaatctagtacctcagtgccatgatgaccatc
cctgtattcattatgaacttgggcaggttgctccaggcttagacacaaga
atggaatgctttgatctaaagaggtttttaatctcctgatttgtggatag
gtaaaatcaccttggattctctaagttttctgttgaaaggtttagatgag
ctgggcagtgatggtacatgcctttaatcccagcacctaggaggcagagg
ccagcagatttctgagtttgaggccagcctggtctacagagtgagttcca
ggacagccaaggctatacagagaaaccctgtctcaaaaacaaacaaacaa
acaaacaaaaaaaaacaaagaaagatttagatgtttgtatcaacaaatat
agaacattagtatttgttcttgtataattaaataattattatataccttt
aaattctatgggatccaatttttaatataattattttacttaaaagcatt
caaaatgtcaacagaacaactctttagttttttcagtattgggtggtatt
cagttaacagaacaattaatattttcacgtaaactgaatcaaaacaactg
aagatgtaaaaagccatcatcataaattggatgggtgtaccaacaagaac
ctggtttaaatttttcctactaacttacagccctatgctgtatctaatga
aggttagcagttattgaaaatacctccagtacagggctaacaatgcattt
ggtaatttgataacttcacaaaaacatgctacagttaaaaataatcctta
cacttccttattatttcagctgctttttatattttagaagtgagttgtgt
actgaggttatagaccaagaaaattaagtgctagaagaactcaatcaatc
atgttccaatttccatcattcttc

gaattcttttctatttattttgagcttttgttttataagttatttcttaa
aatccactcccccttaatagtgctatatattagaaaaatttctggggtca
tttgtagatttattttaaatgcattgaattacatgtgctatgaagcttta
taatttgtacctactggttttagtttatctacaaaatgattatcttttac
acagtttaaaactttttatgtattagttaataaaacatttcccatgataa
aaatagattccatagatttgagcagcaggtttcatgatatattgtactca
cactgaacacttgacagttctctggaacacctgaaatggatccccaaatt
gcccagaccattagaggtcaaattgtgttgcttttatcttttttctctat
tttaaagtaagcaatgtgtagaattaacatcgccccggtcttgctgagtt
tcacaccttcttctttttctttcttaacattatttctgtttttttttttt
caatttccacccttaaacttcattacacatttactatttcttgtggatag
aagtcaggataatggtaaaagattaagtgaattgacaactatgaagactt
gaaagtactgagcattaatcaaagcctataaatattcttacaaatgtctt
ggcacatgttatagttatgttagagtgcatctttgtagccgatttttcat
ttttgcctgtgaacacataactgaaccttttttttttttaaatctcattt
gcaggtagctgtattttataaagtttctccagagaaaccaagctaacaaa
atatatacaaataaagtaaaatttattgtggcaagttttctacatttatt
atctaagctgagaaacacctgaatcttaatgttctacacacaggtaaatt
aagggaaaccatggggtgtcatttcagaatagaaatccagaaggaaaggc
agtcacatgaattgcttattttgatggcaggaaagagtgaaaaactgtct
caggcagtggaggcaggaacaaataggttacattccctttattcatatag
gttgtttactatgatgcccacctgtagactgagattgaattaacaatgaa
ccaagcaaacacttcatacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_62242607_62243723
seq2: B6Ng01-179M18.b_44_1167

seq1  GAATTCAGTTTTACAGTTGTAGTCATATTCCCATGATGTTCCCTAGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTACAGTTGTAGTCATATTCCCATGATGTTCCCTAGTATC  50

seq1  TGACATACTCACCTCACGACTCACCACTTATGCAAACCCTCATCATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATACTCACCTCACGACTCACCACTTATGCAAACCCTCATCATCCAC  100

seq1  TTACATGCCCCAAAATACTTGTGCCATATATATATGTCCATACCCAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGCCCCAAAATACTTGTGCCATATATATATGTCCATACCCAGAAT  150

seq1  ATTATATGCTTATACTGTCCTTTTCTTGTCTACCTCTAATACCTCTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGCTTATACTGTCCTTTTCTTGTCTACCTCTAATACCTCTAGTA  200

seq1  ATGCTATTTTGTCAAAGTAAATCTAGTACCTCAGTGCCATGATGACCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTTTGTCAAAGTAAATCTAGTACCTCAGTGCCATGATGACCATC  250

seq1  CCTGTATTCATTATGAACTTGGGCAGGTTGCTCCAGGCTTAGACACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATTCATTATGAACTTGGGCAGGTTGCTCCAGGCTTAGACACAAGA  300

seq1  ATGGAATGCTTTGATCTAAAGAGGTTTTTAATCTCCTGATTTGTGGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGCTTTGATCTAAAGAGGTTTTTAATCTCCTGATTTGTGGATAG  350

seq1  GTAAAATCACCTTGGATTCTCTAAGTTTTCTGTTGAAAGGTTTAGATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATCACCTTGGATTCTCTAAGTTTTCTGTTGAAAGGTTTAGATGAG  400

seq1  CTGGGCAGTGATGGTACATGCCTTTAATCCCAGCACCTAGGAGGCAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGTGATGGTACATGCCTTTAATCCCAGCACCTAGGAGGCAGAGG  450

seq1  CCAGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  500

seq1  GGACAGCCAAGGCTATACAGAGAAACCCTGTCTCAAAAACAAACAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAAGGCTATACAGAGAAACCCTGTCTCAAAAACAAACAAACAA  550

seq1  ACAAACAAAAAAAAACAAAGAAAGATTTAGATGTTTGTATCAACAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAAAAACAAAGAAAGATTTAGATGTTTGTATCAACAAATAT  600

seq1  AGAACATTAGTATTTGTTCTTGTATAATTAAATAATTATTATATACCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTAGTATTTGTTCTTGTATAATTAAATAATTATTATATACCTTT  650

seq1  AAATTCTATGGGATCCAA-TTTTAATATAATTATTTTACTTAAAAGCATT  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAATTCTATGGGATCCAATTTTTAATATAATTATTTTACTTAAAAGCATT  700

seq1  CAAAATGTCAACAGAACAACTCTTTAGTTTTTTCAGTATTGGGTGGTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTCAACAGAACAACTCTTTAGTTTTTTCAGTATTGGGTGGTATT  750

seq1  CAGTTAACAGAACAATTAATATTTTCACGTAAACTGAATCAAAACAACTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAACAGAACAATTAATATTTTCACGTAAACTGAATCAAAACAACTG  800

seq1  AAGATGTAAAAAGCCATCATCATAAATTGGATGGGTGTACCAACAAGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAAAAAGCCATCATCATAAATTGGATGGGTGTACCAACAAGAAC  850

seq1  CTGGTTTAAA-TTTTCCTACTAACTTACAGCCCTATGCTGTATCTAATG-  897
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  CTGGTTTAAATTTTTCCTACTAACTTACAGCCCTATGCTGTATCTAATGA  900

seq1  AGGTTAGCAGTTATTGAAAATACCTCCAGTACAGGGCTAACAATGCATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCAGTTATTGAAAATACCTCCAGTACAGGGCTAACAATGCATTT  950

seq1  GGTAATTTGATAACTTCACAAAAACATGCTACAGTTAAAAATAATCCTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTTGATAACTTCACAAAAACATGCTACAGTTAAAAATAATCCTTA  1000

seq1  CACTTCCTTA-TATTTCAGCTGC-TTTTATATTTTAGAAGTGAGTTGTGT  1045
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  CACTTCCTTATTATTTCAGCTGCTTTTTATATTTTAGAAGTGAGTTGTGT  1050

seq1  ACTGAGGTTTATAGACCAGGAAAATT-AGTGCTAGGAAGAACTCATTC-A  1093
      ||||||| |||||||||| ||||||| ||||||| |||||||||| || |
seq2  ACTGAGG-TTATAGACCAAGAAAATTAAGTGCTA-GAAGAACTCAATCAA  1098

seq1  TCATGTT-CAATTT-CATCATCCTTC  1117
      ||||||| |||||| |||||| ||||
seq2  TCATGTTCCAATTTCCATCATTCTTC  1124


seq1: chr6_62358148_62359260
seq2: B6Ng01-179M18.g_69_1191 (reverse)

seq1  TTCTGTATGAAATGTTTTGCTTTGTTTTCATTGTTTAATTCAATCTTCAG  50
      ||||||||||| || ||||||| |  ||||||| ||||||||||| ||||
seq2  TTCTGTATGAAGTG-TTTGCTTGG--TTCATTG-TTAATTCAATC-TCAG  45

seq1  TCTACAGGTGGGCATCATAAGTAACAAACTATATGAA-ATAAGGAATGT-  98
      |||||||||||||||||||   ||||| ||||||||| | | ||||||| 
seq2  TCTACAGGTGGGCATCATAGTAAACAACCTATATGAATAAAGGGAATGTA  95

seq1  ACCTATTTG-TCCTGCCT-CACTGCCTGAGACAGTTTTTCACTCTTTCCT  146
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  ACCTATTTGTTCCTGCCTCCACTGCCTGAGACAGTTTTTCACTCTTTCCT  145

seq1  GCCATCAAAAT-AGC-ATTCATGTGACTGCCTTTCCTTCTGGA-TTCTAT  193
      ||||||||||| ||| ||||||||||||||||||||||||||| ||||||
seq2  GCCATCAAAATAAGCAATTCATGTGACTGCCTTTCCTTCTGGATTTCTAT  195

seq1  TCTG-AATGACA-CCCATGGTTTCCCTTAATTTA-CTGTGTGTAG-ACAT  239
      |||| ||||||| ||||||||||||||||||||| |||||||||| ||||
seq2  TCTGAAATGACACCCCATGGTTTCCCTTAATTTACCTGTGTGTAGAACAT  245

seq1  T-AGATTCAGGTGTTTCTCAGCTTAGATAAT-AATGTAG-AAACTTGCCA  286
      | ||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TAAGATTCAGGTGTTTCTCAGCTTAGATAATAAATGTAGAAAACTTGCCA  295

seq1  CAATAAATTTTACTTTATTTGTATATATTTTGTTAGCTTGGTTTCTCTGG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATTTTACTTTATTTGTATATATTTTGTTAGCTTGGTTTCTCTGG  345

seq1  AGAAACTTTATAAAATACAGCTACCTGCAAATGAGATTT-AAAAAAAAAA  385
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAACTTTATAAAATACAGCTACCTGCAAATGAGATTTAAAAAAAAAAA  395

seq1  AGGTTCAGTTATGTGTTCACAGGCAAAAATGAAAAATCGGCTACAAAGAT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGTTATGTGTTCACAGGCAAAAATGAAAAATCGGCTACAAAGAT  445

seq1  GCACTCTAACATAACTATAACATGTGCCAAGACATTTGTAAGAATATTTA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTAACATAACTATAACATGTGCCAAGACATTTGTAAGAATATTTA  495

seq1  TAGGCTTTGATTAATGCTCAGTACTTTCAAGTCTTCATAGTTGTCAATTC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTTGATTAATGCTCAGTACTTTCAAGTCTTCATAGTTGTCAATTC  545

seq1  ACTTAATCTTTTACCATTATCCTGACTTCTATCCACAAGAAATAGTAAAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATCTTTTACCATTATCCTGACTTCTATCCACAAGAAATAGTAAAT  595

seq1  GTGTAATGAAGTTTAAGGGTGGAAATTGAAAAAAAAAAAACAGAAATAAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGAAGTTTAAGGGTGGAAATTGAAAAAAAAAAAACAGAAATAAT  645

seq1  GTTAAGAAAGAAAAAGAAGAAGGTGTGAAACTCAGCAAGACCGGGGCGAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAAGAAAAAGAAGAAGGTGTGAAACTCAGCAAGACCGGGGCGAT  695

seq1  GTTAATTCTACACATTGCTTACTTTAAAATAGAGAAAAAAGATAAAAGCA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTCTACACATTGCTTACTTTAAAATAGAGAAAAAAGATAAAAGCA  745

seq1  ACACAATTTGACCTCTAATGGTCTGGGCAATTTGGGGATCCATTTCAGGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTTGACCTCTAATGGTCTGGGCAATTTGGGGATCCATTTCAGGT  795

seq1  GTTCCAGAGAACTGTCAAGTGTTCAGTGTGAGTACAATATATCATGAAAC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAGAACTGTCAAGTGTTCAGTGTGAGTACAATATATCATGAAAC  845

seq1  CTGCTGCTCAAATCTATGGAATCTATTTTTATCATGGGAAATGTTTTATT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTCAAATCTATGGAATCTATTTTTATCATGGGAAATGTTTTATT  895

seq1  AACTAATACATAAAAAGTTTTAAACTGTGTAAAAGATAATCATTTTGTAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATACATAAAAAGTTTTAAACTGTGTAAAAGATAATCATTTTGTAG  945

seq1  ATAAACTAAAACCAGTAGGTACAAATTATAAAGCTTCATAGCACATGTAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAAAACCAGTAGGTACAAATTATAAAGCTTCATAGCACATGTAA  995

seq1  TTCAATGCATTTAAAATAAATCTACAAATGACCCCAGAAATTTTTCTAAT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCATTTAAAATAAATCTACAAATGACCCCAGAAATTTTTCTAAT  1045

seq1  ATATAGCACTATTAAGGGGGAGTGGATTTTAAGAAATAACTTATAAAACA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCACTATTAAGGGGGAGTGGATTTTAAGAAATAACTTATAAAACA  1095

seq1  AAAGCTCAAAATAAATAGAAAAGAATTC  1113
      ||||||||||||||||||||||||||||
seq2  AAAGCTCAAAATAAATAGAAAAGAATTC  1123


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