BAC Information

Click to search

BAC

Clone NameB6Ng01-179N05
Chromosome6 (Build37)
Map Location 8,127,809 - 8,128,921
singlet/doubletsinglet
Overlap geneCol28a1
Upstream geneEG667500, Tac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661
Downstream geneBC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179N05.bB6Ng01-179N05.g
ACCGA006440GA006441
length8581,114
definitionB6Ng01-179N05.b B6Ng01-179N05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaagaggaacacttatagatctgagtgcctccaaaaagaaact
atagagtgcacacactatcagcttgacaacacatctaaaagctctagaat
gaaaggaagcaaattcacccaagatgagtagactgcaggaaataatcaaa
ctcaggaacgaaatcacccaagtggaaacaaaaagaactattcaaagaat
taaacaaacgaggagctggttctttgagaaaatcaacaagatagataaac
ccttagccatattcactagagggcacagggacagcatactaattaacaaa
attagaaatgaaaaggtgacataacaacagatcctgaagaaatccaaaac
accatcagatccttctgcaaaaggctatactcaacaaaactgggaaacct
ggataaaatggacaaatttctagacagataccaggtaccaaagttaaagc
aggatcagattaatgacctaaacagttctatatcccctaaagaaatagaa
gcagtcataatagtctctcaaccaaaaaaaaaaaaaaaaaaaaaccagaa
gggtttagtgcagagttctatcagaccttcaaagaagatctaattccagt
tcttctcaaactattccacaaaatagaaacagaaggtaatctacccaatt
cattctatgaagccacaattactctgatacctaaatcacataaagaccca
acaaagatagagaacttcagaccaaattcccttatgaatatcgatgcaaa
aatactcaataaaattctccctaaccgaatccaagaacacatcaaaacaa
tcatccatccctcacgaagtaggttttattccagggatgcagggatggtt
taatatac

gaattcaggtgactgcatgtttgttatattcatttttactataactgatg
cttagcaaagccaactctttgggtcacacagaaccactacgttttcagtc
ttgctgtgatgtgcacacagcgtcagtgaatcaagtcaagttagaataaa
attcttcctcagctttccatagctcctttctcttttcttttctcttttct
cttttctcctttctcttttctcttctcttttctcttttctcttttctctc
tcctcttttctcttttctcttttctcttttctcttttctcctttctcttt
tctcttctcttttctctcttctcttttctcttttctcttttctcttgctt
tggaaagtttatcttcatcaggttccacagtggaactgcatatctaatga
ataaaaattaatttgactacaaaacccactaggtttgcttaaaagagact
tccaagcaaaatggggaaagatctgaagtcagaggcctacccctttaacc
caactatttttttctatgtaaacaatgaaaactctaattctctattaaaa
ttctcagtcatctgtatcagttcaatatgcccagctgcacacacagtgat
gtttaaatccacagaatttcctgacaaaaggagactgatatgttgctagc
tcaggatacccaagggaacaggaacaaaaggtttatttagaattgacaat
cggcgtggtttccgagtgcttgcctccttcggctgcattaactccacaag
gtctggaaaaggaatcacattttcctccttttggcaccttgccttcagaa
aatgtgaactggaaattcacgaccatgatttttccagactcttcaatcca
gggtgggaataatacatgcaacggcagtgatgggtgagctgggagacgga
cttctttcagacagggcagatggattaattcccacaaagaagcaaaactt
gttttggcctggagatacggctactgctggcttcagcccactgttctcct
caaatagcaagcagcagaagctattaacagactcacttctggtgtgaagc
cacctgtgttgcgcatgtgctggagagcattgtctaaaatgtcaaccatg
cctctcgaccagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8127809_8128921
seq2: B6Ng01-179N05.g_67_1180

seq1  GAATTCAGGTGACTGCATGTTTGTTATATTCATTTTTACTATAACTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGACTGCATGTTTGTTATATTCATTTTTACTATAACTGATG  50

seq1  CTTAGCAAAGCCAACTCTTTGGGTCACACAGAACCACTACGTTTTCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAAAGCCAACTCTTTGGGTCACACAGAACCACTACGTTTTCAGTC  100

seq1  TTGCTGTGATGTGCACACAGCGTCAGTGAATCAAGTCAAGTTAGAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGATGTGCACACAGCGTCAGTGAATCAAGTCAAGTTAGAATAAA  150

seq1  ATTCTTCCTCAGCTTTCCATAGCTCCTTTCTCTTTTCTTTTCTCTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCTCAGCTTTCCATAGCTCCTTTCTCTTTTCTTTTCTCTTTTCT  200

seq1  CTTTTCTCCTTTCTCTTTTCTCTTCTCTTTTCTCTTTTCTCTTTTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCCTTTCTCTTTTCTCTTCTCTTTTCTCTTTTCTCTTTTCTCTC  250

seq1  TCCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCCTTTCTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCCTTTCTCTTT  300

seq1  TCTCTTCTCTTTTCTCTCTTCTCTTTTCTCTTTTCTCTTTTCTCTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCTTTTCTCTCTTCTCTTTTCTCTTTTCTCTTTTCTCTTGCTT  350

seq1  TGGAAAGTTTATCTTCATCAGGTTCCACAGTGGAACTGCATATCTAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTTATCTTCATCAGGTTCCACAGTGGAACTGCATATCTAATGA  400

seq1  ATAAAAATTAATTTGACTACAAAACCCACTAGGTTTGCTTAAAAGAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTAATTTGACTACAAAACCCACTAGGTTTGCTTAAAAGAGACT  450

seq1  TCCAAGCAAAATGGGGAAAGATCTGAAGTCAGAGGCCTACCCCTTTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAAAATGGGGAAAGATCTGAAGTCAGAGGCCTACCCCTTTAACC  500

seq1  CAACTATTTTTTTCTATGTAAACAATGAAAACTCTAATTCTCTATTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATTTTTTTCTATGTAAACAATGAAAACTCTAATTCTCTATTAAAA  550

seq1  TTCTCAGTCATCTGTATCAGTTCAATATGCCCAGCTGCACACACAGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCATCTGTATCAGTTCAATATGCCCAGCTGCACACACAGTGAT  600

seq1  GTTTAAATCCACAGAATTTCCTGACAAAAGGAGACTGATATGTTGCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATCCACAGAATTTCCTGACAAAAGGAGACTGATATGTTGCTAGC  650

seq1  TCAGGATACCCAAGGGAACAGGAACAAAAGGTTTATTTAGAATTGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATACCCAAGGGAACAGGAACAAAAGGTTTATTTAGAATTGACAAT  700

seq1  CGGCGTGGTTTCCGAGTGCTTGCCTCCTTCGGCTGCATTAACTCCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGTGGTTTCCGAGTGCTTGCCTCCTTCGGCTGCATTAACTCCACAAG  750

seq1  GTCTGGAAAAGGAATCACATTTTCCTCCTTTTGGCACCTTGCCTTCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAAAAGGAATCACATTTTCCTCCTTTTGGCACCTTGCCTTCAGAA  800

seq1  AATGTGAACTGGAAATTCACGACCATGATTTTTCCAGACTCTTCAATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAACTGGAAATTCACGACCATGATTTTTCCAGACTCTTCAATCCA  850

seq1  GGGTGGGAATAATACATGCAACGGCAGTGATGGGTGAGCTGGGAGACGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAATAATACATGCAACGGCAGTGATGGGTGAGCTGGGAGACGGA  900

seq1  CTTCTTTCAGACA-GGCAGATGGATTAAATCCCACAAAGAAGCAAAAC-T  948
      ||||||||||||| |||||||||||||| ||||||||||||||||||| |
seq2  CTTCTTTCAGACAGGGCAGATGGATTAATTCCCACAAAGAAGCAAAACTT  950

seq1  GTTT--GGCTGGAGATAACGCTACTGCTGGCTTCAGGCCACTGTTTCTTC  996
      ||||  | |||||||||  ||||||||||||||||| ||||||||   ||
seq2  GTTTTGGCCTGGAGATACGGCTACTGCTGGCTTCAGCCCACTGTT--CTC  998

seq1  CTCAAATAGCAGGCAGCAGGAAGCTTATTAACAGAACTTCACTTCT-GTG  1045
      ||||||||||| |||||| ||||| ||||||||||   |||||||| |||
seq2  CTCAAATAGCAAGCAGCA-GAAGC-TATTAACAGA--CTCACTTCTGGTG  1044

seq1  TGAAG-CACCTGTGTTGGCGCATGTGCT-GAGAGCAATTGTCT-AAATGT  1092
      ||||| |||||||||| ||||||||||| |||||| ||||||| ||||||
seq2  TGAAGCCACCTGTGTT-GCGCATGTGCTGGAGAGC-ATTGTCTAAAATGT  1092

seq1  CAACCAAG-CTCTCGACCAGCT  1113
      |||||| | |||||||||||||
seq2  CAACCATGCCTCTCGACCAGCT  1114


| Home | SequenceCutter | Blast | Download |