BAC Information

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BAC

Clone NameB6Ng01-180A07
Chromosome6 (Build37)
Map Location 133,140,923 - 133,261,212
singlet/doubletdoublet
Overlap gene5530400C23Rik
Upstream genePrb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
Downstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180A07.bB6Ng01-180A07.g
ACCGA006570GA006571
length1,186665
definitionB6Ng01-180A07.b B6Ng01-180A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,260,053 - 133,261,212)(133,140,923 - 133,141,587)
sequence
gaattctctcacaacaagaaaaatatcagtaataagtcacatttgttttc
tgcctcatttcacagtggtgatttgtgatgggaagcaaacaaagctctcc
ggcagttatagtagctttgtcttaccttcattcagttggctgatgtcaat
aacgtctccaccatcaggttaggaaatatttatttatatgcatagagaaa
ttaatatttattcatctatatgacaaatatatgatgagataatacactga
aacacagttaagcatcaagaaaggaagatagattggggtttacctggttc
tggttggacatcagatgtatcagcattgttcacatatagaaataaagaat
agaatatagagaaacttcaggccacaatcttttagagtttatagagatct
gacaaaaaaaggtgacttccagagtcaaacttttaaacacaactaagctc
aacagttactctctgagatgcttctataaatgtacaggtatgtaagagca
tgttggaattgcttgtgttcttgtcctcaagaacaaaacacaaagatctt
ttaaattctcccagaataactattatcaaactactccctatttgaaacta
cactgcgtttttgaaattatgttgcataattcagcttgaaaatatgtctc
acttctttgtttcttcaatgtcatttagtacagtcaggagaaaaatccgt
gagaacccaccttaaaatgttacatgatctgcttaacattctagaggtgg
gctgagtaaaatatatggagttggctctgatgattatatgtcagcatcta
taaaataaatttattttatatttctatactttgaattaatcctggtgtgt
ctatctgtatcatgtttctgacaaccactatgcagcaaagctgggatgct
actaatatttgctctatgatatatactctgatctgtccttttttggtgtt
tcctttacattgtacagagcacttttcctaaaacacaaaatgaagccatc
atatttctctcttcaagaatttttattgggattttcaataagaaacattt
aagtaaaatgatgatggtaacattgctaaaaccataactaattcaaacct
tttctcaacaaaaatttcctattgtccctggtttttttctaaatgatgtc
tcctcaatttgtccccatgcatttcttcccctcttt
gaattctcactgcaggtgagaggcaccctgagtcttatctcaggaatgta
gattcctccttaacaggccatggtgtctagctgggctcctcacataactc
aggtccttagaagtcttgggagtcaggaagaggggactataattcaaatt
tttagtgtcttatgtgccaggaagggataggggggaggagttgactggtt
cctaacacaaggccatttggcttattagggtgggaaactgcaaaaggctt
actttctcacagtatgatctccaacaaaagttttcagtagaactaagata
attctatcaatgtgatcttaagtgaggaaggcagttgagttactgatctc
tgatttggttgtaagtttgaattaaccacatataagtaataaacagtgtc
agatattatcatggcagaatgcctgagatatttctggtggtcccatcatc
actgaaagccaagaaggtcacataaatctgtttatttagggtaaggattt
gggaaccactcaccaaatatagggagttatttgcatttttctacaagagg
agtaaactctgaagcaaagagagaaagagacagagagacagagacaggca
aagagagagagacagagggagagagacagagagagagagagagagagaga
gagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_133260053_133261212
seq2: B6Ng01-180A07.b_44_1229 (reverse)

seq1  AAAGA-GGGAAGAAA-GCA-GGGGACAAA-TGA-GAGACATCA-TTAGAA  44
      ||||| ||||||||| ||| ||||||||| ||| ||||||||| ||||||
seq2  AAAGAGGGGAAGAAATGCATGGGGACAAATTGAGGAGACATCATTTAGAA  50

seq1  AAAA--CA-GGACCATA-GAAATTTT--GTGAG-AAAGGTTGGAA-TAGT  86
      ||||  || |||| ||| ||||||||   |||| ||||||| ||| ||||
seq2  AAAAACCAGGGACAATAGGAAATTTTTGTTGAGAAAAGGTTTGAATTAGT  100

seq1  TAT-GTTTTAGC-ATG-TAACATCATCATTTTACTT-AATGTTTC-TATT  131
      ||| |||||||| ||| || |||||||||||||||| |||||||| ||||
seq2  TATGGTTTTAGCAATGTTACCATCATCATTTTACTTAAATGTTTCTTATT  150

seq1  G-AAATCC--AT-AAAATTCTTGAAGAGAGAAATATGATGGC-TCATTTT  176
      | ||||||  || ||||||||||||||||||||||||||||| |||||||
seq2  GAAAATCCCAATAAAAATTCTTGAAGAGAGAAATATGATGGCTTCATTTT  200

seq1  GTG-TTTAGG-AAAGTGCTCTGTACAATGTAAA-GAAACACCAAAAAAGG  223
      ||| |||||| |||||||||||||||||||||| ||||||||||||||||
seq2  GTGTTTTAGGAAAAGTGCTCTGTACAATGTAAAGGAAACACCAAAAAAGG  250

seq1  ACAGATCAGAGTATATTATCATAGAGCAAATATTAGTAGCAT-CCAGCTT  272
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  ACAGATCAGAGTATA-TATCATAGAGCAAATATTAGTAGCATCCCAGCTT  299

seq1  TGCTGCATAGTGGTTGTCAGAAACATGATACAGATAGACACACCAGGATT  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATAGTGGTTGTCAGAAACATGATACAGATAGACACACCAGGATT  349

seq1  AATTCAAAGTATAGAAATATAAAATAAATTTAATTTTATAGATGCTGACA  372
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATTCAAAGTATAGAAATATAAAATAAATTT-ATTTTATAGATGCTGACA  398

seq1  TATAATCATCAGAGCCAACTCCATATATTTTACTCAGCCCACCTCTAGAA  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCATCAGAGCCAACTCCATATATTTTACTCAGCCCACCTCTAGAA  448

seq1  TGTTAAGCAGATCATGTAACATTTTAAGGTGGGTTCTCACGGATTTTTCT  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCAGATCATGTAACATTTTAAGGTGGGTTCTCACGGATTTTTCT  498

seq1  CCTGACTGTACTAAATGACATTGAAGAAACAAAGAAGTGAGACATATTTT  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGTACTAAATGACATTGAAGAAACAAAGAAGTGAGACATATTTT  548

seq1  CAAGCTGAATTATGCAACATAATTTCAAAAACGCAGTGTAGTTTCAAATA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGAATTATGCAACATAATTTCAAAAACGCAGTGTAGTTTCAAATA  598

seq1  GGGAGTAGTTTGATAATAGTTATTCTGGGAGAATTTAAAAGATCTTTGTG  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAGTTTGATAATAGTTATTCTGGGAGAATTTAAAAGATCTTTGTG  648

seq1  TTTTGTTCTTGAGGACAAGAACACAAGCAATTCCAACATGCTCTTACATA  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTTGAGGACAAGAACACAAGCAATTCCAACATGCTCTTACATA  698

seq1  CCTGTACATTTATAGAAGCATCTCAGAGAGTAACTGTTGAGCTTAGTTGT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACATTTATAGAAGCATCTCAGAGAGTAACTGTTGAGCTTAGTTGT  748

seq1  GTTTAAAAGTTTGACTCTGGAAGTCACCTTTTTTTGTCAGATCTCTATAA  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAGTTTGACTCTGGAAGTCACCTTTTTTTGTCAGATCTCTATAA  798

seq1  ACTCTAAAAGATTGTGGCCTGAAGTTTCTCTATATTCTATTCTTTATTTC  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAAGATTGTGGCCTGAAGTTTCTCTATATTCTATTCTTTATTTC  848

seq1  TATATGTGAACAATGCTGATACATCTGATGTCCAACCAGAACCAGGTAAA  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGAACAATGCTGATACATCTGATGTCCAACCAGAACCAGGTAAA  898

seq1  CCCCAATCTATCTTCCTTTCTTGATGCTTAACTGTGTTTCAGTGTATTAT  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATCTATCTTCCTTTCTTGATGCTTAACTGTGTTTCAGTGTATTAT  948

seq1  CTCATCATATATTTGTCATATAGATGAATAAATATTAATTTCTCTATGCA  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCATATATTTGTCATATAGATGAATAAATATTAATTTCTCTATGCA  998

seq1  TATAAATAAATATTTCCTAACCTGATGGTGGAGACGTTATTGACATCAGC  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAAATATTTCCTAACCTGATGGTGGAGACGTTATTGACATCAGC  1048

seq1  CAACTGAATGAAGGTAAGACAAAGCTACTATAACTGCCGGAGAGCTTTGT  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAATGAAGGTAAGACAAAGCTACTATAACTGCCGGAGAGCTTTGT  1098

seq1  TTGCTTCCCATCACAAATCACCACTGTGAAATGAGGCAGAAAACAAATGT  1122
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCATCACAAATCACCACTGTGAAATGAGGCAGAAAACAAATGT  1148

seq1  GACTTATTACTGATATTTTTCTTGTTGTGAGAGAATTC  1160
      ||||||||||||||||||||||||||||||||||||||
seq2  GACTTATTACTGATATTTTTCTTGTTGTGAGAGAATTC  1186

seq1: chr6_133140923_133141587
seq2: B6Ng01-180A07.g_68_732

seq1  GAATTCTCACTGCAGGTGAGAGGCACCCTGAGTCTTATCTCAGGAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTGCAGGTGAGAGGCACCCTGAGTCTTATCTCAGGAATGTA  50

seq1  GATTCCTCCTTAACAGGCCATGGTGTCTAGCTGGGCTCCTCACATAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCCTTAACAGGCCATGGTGTCTAGCTGGGCTCCTCACATAACTC  100

seq1  AGGTCCTTAGAAGTCTTGGGAGTCAGGAAGAGGGGACTATAATTCAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTTAGAAGTCTTGGGAGTCAGGAAGAGGGGACTATAATTCAAATT  150

seq1  TTTAGTGTCTTATGTGCCAGGAAGGGATAGGGGGGAGGAGTTGACTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTCTTATGTGCCAGGAAGGGATAGGGGGGAGGAGTTGACTGGTT  200

seq1  CCTAACACAAGGCCATTTGGCTTATTAGGGTGGGAAACTGCAAAAGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACAAGGCCATTTGGCTTATTAGGGTGGGAAACTGCAAAAGGCTT  250

seq1  ACTTTCTCACAGTATGATCTCCAACAAAAGTTTTCAGTAGAACTAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCACAGTATGATCTCCAACAAAAGTTTTCAGTAGAACTAAGATA  300

seq1  ATTCTATCAATGTGATCTTAAGTGAGGAAGGCAGTTGAGTTACTGATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCAATGTGATCTTAAGTGAGGAAGGCAGTTGAGTTACTGATCTC  350

seq1  TGATTTGGTTGTAAGTTTGAATTAACCACATATAAGTAATAAACAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGTTGTAAGTTTGAATTAACCACATATAAGTAATAAACAGTGTC  400

seq1  AGATATTATCATGGCAGAATGCCTGAGATATTTCTGGTGGTCCCATCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTATCATGGCAGAATGCCTGAGATATTTCTGGTGGTCCCATCATC  450

seq1  ACTGAAAGCCAAGAAGGTCACATAAATCTGTTTATTTAGGGTAAGGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGCCAAGAAGGTCACATAAATCTGTTTATTTAGGGTAAGGATTT  500

seq1  GGGAACCACTCACCAAATATAGGGAGTTATTTGCATTTTTCTACAAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCACTCACCAAATATAGGGAGTTATTTGCATTTTTCTACAAGAGG  550

seq1  AGTAAACTCTGAAGCAAAGAGAGAAAGAGACAGAGAGACAGAGACAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTCTGAAGCAAAGAGAGAAAGAGACAGAGAGACAGAGACAGGCA  600

seq1  AAGAGAGAGAGACAGAGGGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGAGACAGAGGGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGA  650

seq1  GAGAGAGAGAGAGAG  665
      |||||||||||||||
seq2  GAGAGAGAGAGAGAG  665