BAC Information

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BAC

Clone NameB6Ng01-180J17
Chromosome6 (Build37)
Map Location 83,558,021 - 83,702,427
singlet/doubletdoublet
Overlap geneClec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1
Upstream genePole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956
Downstream gene1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180J17.bB6Ng01-180J17.g
ACCGA006992GA006993
length6241,124
definitionB6Ng01-180J17.b B6Ng01-180J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,701,804 - 83,702,427)(83,558,021 - 83,559,123)
sequence
gaattcacatgtggtcttctgggaatcaatccctgaagtcccttcaaaca
cctgtgagttaggcatcattgctgagtggcttgtctgaaaagagtggggc
ttcccactgaaggcccacagtgtgcagctctgagcagggtgttctctggg
acataggtctgtcttccctccaaggcttgtaagatagcattggaactgtg
agttcattcttagaattggtacacttacctgaacaatggccttggtccca
gccacttcaagcacctggccactcctctgagtaccatcagggagggtaaa
gttgacaatctcagcatactgggcaaactgtcagggagaagagccaccca
aggtgaagccatgctacctccccgtttctcctccttctgatcttaaacta
ctgtctgttttcttgtgccctgatgtggagaaggggatcttgtttgggag
gggcacgctggagtgacctgggactttaatcaggagcatgtgttagagcc
aaagttctttccttggtgcaagtttgtggcatgtgtctaattacctacat
gattattgtagctgcagttggcctctggtggctcctgaaaagaaagagaa
gagggagggagaaggagggagatg
gaattcataattaatcaggatacattgtatgaaaagtgtaaaaatgtttt
aaaaatttagagaaaaaataatgaaataaaaccttctagaaagcatttgg
tgcttatgatggtttgtatatgcttggcccagggagtggcactatttgga
ggtgtgaccttaagtaggtatgtcactgtgggcatgggctttaagaccct
catcctagctgcctggaagtcagtattctgctagcagccttcagatgaag
atgtagaactctcagctcctcctacacccttcctgcctggatgctgccat
acttctgccttgatgataatggactgatctgctgaacctgtaagccagcc
ccattaaatgttgtccttgtaagagttgccttggacactgagcagtggtg
gcacacacctttaatcccagcacacttgggaggcagaagcaggcggattt
ctgagttcgaggacagccttgtctacagagtgagttccaggacagcctgt
gtcagaaaaaaaaaaagttgccttggtcatgctgtctgctcacagtcgta
aaaccctaactaagacagttcatgaactaggataaccatgtgatttctac
ccttaagtccattggtttacatatcacattcattgatgtgtgtttatatt
gactcatcactatatctctgggaggttttaatgttttcttgtattctgtt
tgcacatattttcaagaacaattttttgttgttgtttgttgttgttctca
agacagggtgtaataacctttgtctgtcttggacctgctttgtagactag
actagccttgaaaatatagagatctgcctgctccttggctccagaatgct
gggattaaaggcatgtgctaccatgcctgacctaatgaacaatttttgta
tcgtttgataatcaattaagtctggattttctttggccaaattagagtaa
gtttgaggaagttgaaaataactcaacctctaaaattggtggcttctaac
aggattttgaagttaagagacttttggtgccaatcagtttcttcaagaaa
tgaaacaatccccattcctttgggaagagtgttagaaccataaacaattt
aacctagctcctgaaattcctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83701804_83702427
seq2: B6Ng01-180J17.b_47_670 (reverse)

seq1  CCTCTCCCTCCTTCTCCCTCCCTCTTCTCTTTCTTTTCAGGAGCCACCAG  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCTCCTTCTCCCTCCCTCTTCTCTTTCTTTTCAGGAGCCACCAG  50

seq1  AGGCCAACTGCAGCTACAATAATCATGTAGGTAATTAGACACATGCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAACTGCAGCTACAATAATCATGTAGGTAATTAGACACATGCCACA  100

seq1  AACTTGCACCAAGGAAAGAACTTTGGCTCTAACACATGCTCCTGATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCACCAAGGAAAGAACTTTGGCTCTAACACATGCTCCTGATTAAA  150

seq1  GTCCCAGGTCACTCCAGCGTGCCCCTCCCAAACAAGATCCCCTTCTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGTCACTCCAGCGTGCCCCTCCCAAACAAGATCCCCTTCTCCAC  200

seq1  ATCAGGGCACAAGAAAACAGACAGTAGTTTAAGATCAGAAGGAGGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGCACAAGAAAACAGACAGTAGTTTAAGATCAGAAGGAGGAGAAA  250

seq1  CGGGGAGGTAGCATGGCTTCACCTTGGGTGGCTCTTCTCCCTGACAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGGTAGCATGGCTTCACCTTGGGTGGCTCTTCTCCCTGACAGTTT  300

seq1  GCCCAGTATGCTGAGATTGTCAACTTTACCCTCCCTGATGGTACTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTATGCTGAGATTGTCAACTTTACCCTCCCTGATGGTACTCAGAG  350

seq1  GAGTGGCCAGGTGCTTGAAGTGGCTGGGACCAAGGCCATTGTTCAGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCCAGGTGCTTGAAGTGGCTGGGACCAAGGCCATTGTTCAGGTAA  400

seq1  GTGTACCAATTCTAAGAATGAACTCACAGTTCCAATGCTATCTTACAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCAATTCTAAGAATGAACTCACAGTTCCAATGCTATCTTACAAGC  450

seq1  CTTGGAGGGAAGACAGACCTATGTCCCAGAGAACACCCTGCTCAGAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGGAAGACAGACCTATGTCCCAGAGAACACCCTGCTCAGAGCTG  500

seq1  CACACTGTGGGCCTTCAGTGGGAAGCCCCACTCTTTTCAGACAAGCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTGGGCCTTCAGTGGGAAGCCCCACTCTTTTCAGACAAGCCACT  550

seq1  CAGCAATGATGCCTAACTCACAGGTGTTTGAAGGGACTTCAGGGATTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGATGCCTAACTCACAGGTGTTTGAAGGGACTTCAGGGATTGAT  600

seq1  TCCCAGAAGACCACATGTGAATTC  624
      ||||||||||||||||||||||||
seq2  TCCCAGAAGACCACATGTGAATTC  624

seq1: chr6_83558021_83559123
seq2: B6Ng01-180J17.g_69_1192

seq1  GAATTCATAATTAATCAGGATACATTGTATGAAAAGTGTAAAAATGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTAATCAGGATACATTGTATGAAAAGTGTAAAAATGTTTT  50

seq1  AAAAATTTAGAGAAAAAATAATGAAATAAAACCTTCTAGAAAGCATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAGAGAAAAAATAATGAAATAAAACCTTCTAGAAAGCATTTGG  100

seq1  TGCTTATGATGGTTTGTATATGCTTGGCCCAGGGAGTGGCACTATTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGATGGTTTGTATATGCTTGGCCCAGGGAGTGGCACTATTTGGA  150

seq1  GGTGTGACCTTAAGTAGGTATGTCACTGTGGGCATGGGCTTTAAGACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGACCTTAAGTAGGTATGTCACTGTGGGCATGGGCTTTAAGACCCT  200

seq1  CATCCTAGCTGCCTGGAAGTCAGTATTCTGCTAGCAGCCTTCAGATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGCTGCCTGGAAGTCAGTATTCTGCTAGCAGCCTTCAGATGAAG  250

seq1  ATGTAGAACTCTCAGCTCCTCCTACACCCTTCCTGCCTGGATGCTGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAACTCTCAGCTCCTCCTACACCCTTCCTGCCTGGATGCTGCCAT  300

seq1  ACTTCTGCCTTGATGATAATGGACTGATCTGCTGAACCTGTAAGCCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCCTTGATGATAATGGACTGATCTGCTGAACCTGTAAGCCAGCC  350

seq1  CCATTAAATGTTGTCCTTGTAAGAGTTGCCTTGGACACTGAGCAGTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAATGTTGTCCTTGTAAGAGTTGCCTTGGACACTGAGCAGTGGTG  400

seq1  GCACACACCTTTAATCCCAGCACACTTGGGAGGCAGAAGCAGGCGGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACCTTTAATCCCAGCACACTTGGGAGGCAGAAGCAGGCGGATTT  450

seq1  CTGAGTTCGAGGACAGCCTTGTCTACAGAGTGAGTTCCAGGACAGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGGACAGCCTTGTCTACAGAGTGAGTTCCAGGACAGCCTGT  500

seq1  GTCAGAAAAAAAAAAAGTTGCCTTGGTCATGCTGTCTGCTCACAGTCGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAAAAAAAAAGTTGCCTTGGTCATGCTGTCTGCTCACAGTCGTA  550

seq1  AAACCCTAACTAAGACAGTTCATGAACTAGGATAACCATGTGATTTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTAACTAAGACAGTTCATGAACTAGGATAACCATGTGATTTCTAC  600

seq1  CCTTAAGTCCATTGGTTTACATATCACATTCATTGATGTGTGTTTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGTCCATTGGTTTACATATCACATTCATTGATGTGTGTTTATATT  650

seq1  GACTCATCACTATATCTCTGGGAGGTTTTAATGTTTTCTTGTATTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCACTATATCTCTGGGAGGTTTTAATGTTTTCTTGTATTCTGTT  700

seq1  TGCACATA-TTTCAAGAACAA-TTTTTGTTGTTG-TTGTTGTTGTTCTCA  747
      |||||||| |||||||||||| |||||||||||| |||||||||||||||
seq2  TGCACATATTTTCAAGAACAATTTTTTGTTGTTGTTTGTTGTTGTTCTCA  750

seq1  AGACAGGGTGTAATAACC-TTGTCTGTCTTGGACCTGCTTTGTAGACTAG  796
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGACAGGGTGTAATAACCTTTGTCTGTCTTGGACCTGCTTTGTAGACTAG  800

seq1  ACTAGCCTTGAAAATATAGAGATCTGCCTGC-CCTTGGCTCCAGAATGCT  845
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTAGCCTTGAAAATATAGAGATCTGCCTGCTCCTTGGCTCCAGAATGCT  850

seq1  GGGATTAAAGGCATGTGCTACCATGCCTGACCTAATGAACAATTTTTGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGCATGTGCTACCATGCCTGACCTAATGAACAATTTTTGTA  900

seq1  TCG-TTGATAATCAA-TAAGTCTGGATTTTCTTTGGTCAATTTAGAGTAA  943
      ||| ||||||||||| |||||||||||||||||||| ||| |||||||||
seq2  TCGTTTGATAATCAATTAAGTCTGGATTTTCTTTGGCCAAATTAGAGTAA  950

seq1  GTTTGA-GAAG-TGAAAATAAACTCACCCT---AAATTGGTGGCTTCTAA  988
      |||||| |||| ||||||| |||||| |||   |||||||||||||||||
seq2  GTTTGAGGAAGTTGAAAAT-AACTCAACCTCTAAAATTGGTGGCTTCTAA  999

seq1  CAG--ATTTGAAG-TAAGAGACTTTT-GTGC--ATCAGGTTTCTCCAAG-  1031
      |||   ||||||| |||||||||||| ||||  |||| |||||| |||| 
seq2  CAGGATTTTGAAGTTAAGAGACTTTTGGTGCCAATCA-GTTTCTTCAAGA  1048

seq1  ATTGAAACA--TCCCATCCTTTGGGGAAGA-TGTTTGAA-CATAAACAAT  1077
      | |||||||   ||||| | || ||||||| |||| ||| ||||||||||
seq2  AATGAAACAATCCCCATTCCTTTGGGAAGAGTGTTAGAACCATAAACAAT  1098

seq1  TTAA-CTAGCTTCTGAAAATTCCTGAA  1103
      |||| |||||| ||| |||||||||||
seq2  TTAACCTAGCTCCTG-AAATTCCTGAA  1124