BAC Information

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BAC

Clone NameB6Ng01-180L01
Chromosome6 (Build37)
Map Location 14,417,905 - 14,577,330
singlet/doubletdoublet
Overlap genenone
Upstream geneTmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
Downstream genePpp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180L01.bB6Ng01-180L01.g
ACCGA007054GA007055
length4251,109
definitionB6Ng01-180L01.b B6Ng01-180L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,576,902 - 14,577,330)(14,417,905 - 14,419,025)
sequence
tttgtgtagctctgagccccattttttaattgggttatttgattttctgg
agtccaccttcttgagttctttatatatattggatattagtcccctatct
gatttagaataggtaaagatcctttcccaatctgttggtggcctttttat
cttattgacagtgtctttttccttacagaatctttttaaataggtgatag
tcacatagattcatttcttgacctatatattactataatgatatatttac
catagatatctggattcactatttggatactgtattttgtggttgttttg
ttttgttttgttttgttttgttttgttgtgttgtgttttgttttgttttg
tttttgagatagggtattgctatgtgaccgtttgataacaaagaactttt
ttttttcttccaacccgagagatca

gaattccattacaaaccaataaccatattcaccaacagaccaatttgtaa
gagaatgagttagcaaaggaaaagtccagagaaaacatccatgtggaaac
aaaactacaaaagttgaacattaaaaaaatccagtacagtggatataaaa
gatgctggggtacaggttttgcaagttcaaggctactcagaaagtttaat
gtcagcctgagtggtttcgccagaccctgcctctagcaaattaactaaat
gcataaataaaaaaaataattaagaaaaaatgtatgctggctgtagaggg
acacaaattaatgttaaagcatttacatagcatgcacaaggctctatgct
caatctccagtcctgagcataatttgacacatgtaagatatacttgaaaa
ataagaaagaaaacataatagacgcgaaatagtgaaatactgtaatctta
gtacctggaagtttaagtcaggattacaagttccaggctagtgtatacta
cacaccaaacacaacactaaatacaaaaataataataataataataataa
taataataataataataataataataataataaagaaatccaattatcta
ggagtgatgtcatatgaaactgatgtaacaggattctaatttttttaatt
tttaaaaatagactttcttaagctagagtgatttaagcagatattttata
atcatacatgatatacataatggttctagtatatgaaaacctgtcagcac
catcagtcataaggcttagaatactactttatacagaaagactaaaactc
acatctacaaaaatgtactggtaaagaagtgggccaaatagattttccag
agagtgcttctagtataaaccagggcatctactttgggaaatttctccat
cagatgaagaaaataatccattttaacattgacctccaaaatactgcttc
ttgttctttattttacataagcaagtatatatgtataaatgtttgtgtgt
atgttaaaaaaaatcattgtatggaacccagtcacatcaaatgattgtca
cagtagagaacattgcttgaaagcattccaagaagtatatgttttatctc
tgggtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_14576902_14577330
seq2: B6Ng01-180L01.b_42_472 (reverse)

seq1  TGATCTCTTGGGTTGGAAG--TTAGCCAAGTTCTTTGCTAACAAACGGTC  48
      |||||||| ||||||||||    |   |||||||||| || |||||||||
seq2  TGATCTCTCGGGTTGGAAGAAAAAAAAAAGTTCTTTGTTATCAAACGGTC  50

seq1  ACATAGCAATACCCTATCTCAAAAACAAAACAAAACAAAACACAACACAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAATACCCTATCTCAAAAACAAAACAAAACAAAACACAACACAA  100

seq1  CAAAACAAAACAAAACAAAACAAAACAAAACAACCACAAAATACAGTATC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAACAAAACAAAACAACCACAAAATACAGTATC  150

seq1  CAAATAGTGAATCCAGATATCTATGGTAAATATATCATTATAGTAATATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTGAATCCAGATATCTATGGTAAATATATCATTATAGTAATATA  200

seq1  TAGGTCAAGAAATGAATCTATGTGACTATCACCTATTTAAAAAGATTCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAAGAAATGAATCTATGTGACTATCACCTATTTAAAAAGATTCTG  250

seq1  TAAGGAAAAAGACACTGTCAATAAGATAAAAAGGCCACCAACAGATTGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAAAGACACTGTCAATAAGATAAAAAGGCCACCAACAGATTGGG  300

seq1  AAAGGATCTTTACCTATTCTAAATCAGATAGGGGACTAATATCCAATATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCTTTACCTATTCTAAATCAGATAGGGGACTAATATCCAATATA  350

seq1  TATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCAATTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCAATTAA  400

seq1  AAAATGGGGCTCAGAGCTACACAAAGAATTC  429
      |||||||||||||||||||||||||||||||
seq2  AAAATGGGGCTCAGAGCTACACAAAGAATTC  431


seq1: chr6_14417905_14419025
seq2: B6Ng01-180L01.g_66_1174

seq1  GAATTCCATTACAAACCAATAACCATATTCACCAACAGACCAATTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTACAAACCAATAACCATATTCACCAACAGACCAATTTGTAA  50

seq1  GAGAATGAGTTAGCAAAGGAAAAGTCCAGAGAAAACATCCATGTGGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAGTTAGCAAAGGAAAAGTCCAGAGAAAACATCCATGTGGAAAC  100

seq1  AAAACTACAAAAGTTGAACATTAAAAAAATCCAGTACAGTGGATATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACAAAAGTTGAACATTAAAAAAATCCAGTACAGTGGATATAAAA  150

seq1  GATGCTGGGGTACAGGTTTTGCAAGTTCAAGGCTACTCAGAAAGTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGGGTACAGGTTTTGCAAGTTCAAGGCTACTCAGAAAGTTTAAT  200

seq1  GTCAGCCTGAGTGGTTTCGCCAGACCCTGCCTCTAGCAAATTAACTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTGAGTGGTTTCGCCAGACCCTGCCTCTAGCAAATTAACTAAAT  250

seq1  GCATAAATAAAAAAAATAATTAAGAAAAAATGTATGCTGGCTGTAGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAATAAAAAAAATAATTAAGAAAAAATGTATGCTGGCTGTAGAGGG  300

seq1  ACACAAATTAATGTTAAAGCATTTACATAGCATGCACAAGGCTCTATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATTAATGTTAAAGCATTTACATAGCATGCACAAGGCTCTATGCT  350

seq1  CAATCTCCAGTCCTGAGCATAATTTGACACATGTAAGATATACTTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCAGTCCTGAGCATAATTTGACACATGTAAGATATACTTGAAAA  400

seq1  ATAAGAAAGAAAACATAATAGACGCGAAATAGTGAAATACTGTAATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGAAAACATAATAGACGCGAAATAGTGAAATACTGTAATCTTA  450

seq1  GTACCTGGAAGTTTAAGTCAGGATTACAAGTTCCAGGCTAGTGTATACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGGAAGTTTAAGTCAGGATTACAAGTTCCAGGCTAGTGTATACTA  500

seq1  CACACCAAACACAACACTAAATACAAA---AATAATAATAATAATAATAA  547
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  CACACCAAACACAACACTAAATACAAAAATAATAATAATAATAATAATAA  550

seq1  TAATAATAATAATAATAATAATAATAATAATAAAGAAATCCAATTATCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATAATAATAATAATAATAAAGAAATCCAATTATCTA  600

seq1  GGAGTGATGTCATATGAAACTGATGTAACAGGATTCTAATTTTTTTAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGATGTCATATGAAACTGATGTAACAGGATTCTAATTTTTTTAATT  650

seq1  TTTAAAAATAGACTTTCTTAAGCTAGAGTGATTTAAGCAGATATTTTATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATAGACTTTCTTAAGCTAGAGTGATTTAAGCAGATATTTTATA  700

seq1  ATCATACATGATATACATAATGGTTCTAGTATATGAAAACCTGTCAGCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACATGATATACATAATGGTTCTAGTATATGAAAACCTGTCAGCAC  750

seq1  CATCAGTCATAAGGCTTAGAATACTACTTTATACAGAAAGACTAAAACTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCATAAGGCTTAGAATACTACTTTATACAGAAAGACTAAAACTC  800

seq1  ACATCTACAAAAATGTACTGGTAAAGAAGTGGGCCAAATAGATTTTCCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTACAAAAATGTACTGGTAAAGAAGTGGGCCAAATAGATTTTCCAG  850

seq1  AGAGTGCTTCTAGTATAAACCAGGGCATCTACTTT-GGAAATTTCTCCAT  896
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAGTGCTTCTAGTATAAACCAGGGCATCTACTTTGGGAAATTTCTCCAT  900

seq1  CAGATGAAGAAAATAATCCATTTTAACATTGACCTCCAAAATACTGCTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAGAAAATAATCCATTTTAACATTGACCTCCAAAATACTGCTTC  950

seq1  TTGTTCTTTA-TTTACATAAGCAAAGTATATATGTATAAAATGTTTGTGT  995
      |||||||||| ||||||||||| |||||||||||||| ||||||||||||
seq2  TTGTTCTTTATTTTACATAAGC-AAGTATATATGTAT-AAATGTTTGTGT  998

seq1  GTATTGTTTAAAAAAAAATCATTGTATGGACCCAAGTTCAACATCCAAAT  1045
      ||| ||||  |||||||||||||||||||| || |||   |||| |||||
seq2  GTA-TGTT--AAAAAAAATCATTGTATGGAACCCAGT--CACAT-CAAAT  1042

seq1  GATTGTCAACAGTAAGAGAACATTGCTTTGAAAGCATTTCCAAGAAGTTA  1095
      ||||||| ||||| |||||||||||| ||||||||| |||||||||||  
seq2  GATTGTC-ACAGT-AGAGAACATTGC-TTGAAAGCA-TTCCAAGAAGT--  1086

seq1  ATAATGTTTTATTCTCTTGGGTGTGA  1121
      || |||||||| |||| |||||||||
seq2  AT-ATGTTTTA-TCTC-TGGGTGTGA  1109


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