BAC Information

Click to search

BAC

Clone NameB6Ng01-180M05
Chromosome6 (Build37)
Map Location 19,819,593 - 19,820,779
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180M05.bB6Ng01-180M05.g
ACCGA007108GA007109
length1,1801,174
definitionB6Ng01-180M05.b B6Ng01-180M05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttgttgtagatgctgctctcaggatcccagattgaacatttg
aataatgtataagtacttctgttggtttgaatatgggttttataatgtcc
acttatgctgttggaatgaacagtgttaataccacaaggaaaagacattt
tgtatttattcattttgtttagatgaactatcactttatcaataattgat
tttataaaatggaaaatattatcaagggatcaagaagaggcttggagaat
gcattcattatactggcagccagccaccattggcagtgtgttactcaaag
ctgccaacctgcttctcattggaggtggttgctaggaaccgtgttatcac
cagtgcaagcctgagtccagttagaaaatctgttcaattaaattactgat
attttattacataaacatgataagcaataattcactgcttagaagacatt
atttgatttgtgtatacctctacctttcatatgagatgaaatcatattaa
gtgtctcacatatacgcactagcacagacccccaaacacatatctctctc
tgtctctctgtctctgtttctctgtctctctctttctctctctctgtctc
tttctttttctctctcttatacacacacacacacacacacacacacacac
acatacatacacacacacacacacacacacacacacacatacatacacac
acacacacagatgcaaaaagaaaaaggaaaaaaaaaaccctgaaaaacaa
aatcatcaaaacaaaccaaacatacaaaacacaatgtcagaagccatcta
ggaaaggctaaagttattcaagtgaaattttccggagatagcctactctt
ttgcatggcagtgatgggtaaactctgaattgcaacaacttcagagattt
catcctaggattgcttcttactgctgatatggataatgactcctgggcac
cagcccacctattgagaaactatgagcaaacttcctacaaatcaatgtaa
gatgatctttcctgaatcatgctttttatatgaattgtgatgttataaac
tgttatttgattcaaataattttaaaagaaaagtttaggccatgtttatc
tggtttgcagaagaatataataaagttagaatcagaactagaatgtgctc
acatctcctcacataaaatggctaaataaa

gaattcttacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaatttcaggtgacagca
gatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgg
gatttcagacttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagtactaccggaggatccagcaatacctctcctgggca
tatatccagaagatgccccaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacaaaggaatggatacagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctggccaaa
tggatggacctggagggcatcatcctgagtgaggtatcacattcacaaag
gaactcacacaatatgtactcactgttaattggatattagcccaaatcct
aggatacccaagatataagatacaatttcctaaacacatgaaactcaaga
aaaatgaagactgaagtgtggacactatgcccctccttagaattgggaac
aaaaaacccttggaaggagttacagagacaaagtttggagctgagatgaa
aggatggtccatgtagagactttcatatccagggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttatcgaaag
gacccagatgtagctgtctcttgtgagactatgcccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcacctat
aggcgacacattatgaactaccgtacccggagctctgactctagctgcat
atgtatcaaagatggctatccgcatcatttgatagagaagtccattgaac
gcaaactttattgtcccagatagaacgcaggccaaaggcgattggcctgt
ttaggacatatctcattcattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19819593_19820779
seq2: B6Ng01-180M05.b_44_1223

seq1  GAATTCATTTGTTGTAGATGCTGCTCTCAGGATCCCAGATTGAACATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTTGTAGATGCTGCTCTCAGGATCCCAGATTGAACATTTG  50

seq1  AATAATGTATAAGTACTTCTGTTGGTTTGAATATGGGTTTTATAATGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTATAAGTACTTCTGTTGGTTTGAATATGGGTTTTATAATGTCC  100

seq1  ACTTATGCTGTTGGAATGAACAGTGTTAATACCACAAGGAAAAGACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGCTGTTGGAATGAACAGTGTTAATACCACAAGGAAAAGACATTT  150

seq1  TGTATTTATTCATTTTGTTTAGATGAACTATCACTTTATCAATAATTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATTCATTTTGTTTAGATGAACTATCACTTTATCAATAATTGAT  200

seq1  TTTATAAAATGGAAAATATTATCAAGGGATCAAGAAGAGGCTTGGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAATGGAAAATATTATCAAGGGATCAAGAAGAGGCTTGGAGAAT  250

seq1  GCATTCATTATACTGGCAGCCAGCCACCATTGGCAGTGTGTTACTCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATTATACTGGCAGCCAGCCACCATTGGCAGTGTGTTACTCAAAG  300

seq1  CTGCCAACCTGCTTCTCATTGGAGGTGGTTGCTAGGAACCGTGTTATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAACCTGCTTCTCATTGGAGGTGGTTGCTAGGAACCGTGTTATCAC  350

seq1  CAGTGCAAGCCTGAGTCCAGTTAGAAAATCTGTTCAATTAAATTACTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAAGCCTGAGTCCAGTTAGAAAATCTGTTCAATTAAATTACTGAT  400

seq1  ATTTTATTACATAAACATGATAAGCAATAATTCACTGCTTAGAAGACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTACATAAACATGATAAGCAATAATTCACTGCTTAGAAGACATT  450

seq1  ATTTGATTTGTGTATACCTCTACCTTTCATATGAGATGAAATCATATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTGTGTATACCTCTACCTTTCATATGAGATGAAATCATATTAA  500

seq1  GTGTCTCACATATACGCACTAGCACAGACCCCCAAACACATATCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCACATATACGCACTAGCACAGACCCCCAAACACATATCTCTCTC  550

seq1  TGTCTCTCTGTCTCTGTTTCTCTGTCTCTCTCTTTCTCTCTCTCTGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTGTCTCTGTTTCTCTGTCTCTCTCTTTCTCTCTCTCTGTCTC  600

seq1  TTTCTTTTTCTCTCTCTTATACACACACACACACACACACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCTCTCTCTTATACACACACACACACACACACACACACACAC  650

seq1  ACATACATACACACACACACACACACACACACACACACATACATACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACACACACACACACACACACACACACACACATACATACACAC  700

seq1  ACACACACAGATGCAAAAAGAAAAAGGAAAAAAAAAACCCTGAAAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGATGCAAAAAGAAAAAGGAAAAAAAAAACCCTGAAAAACAA  750

seq1  AATCATCAAAACAAACCAAACATACAAAACACAATGTCAGAAGCCATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCAAAACAAACCAAACATACAAAACACAATGTCAGAAGCCATCTA  800

seq1  GGAAAGGCTAAAGTTATTCAAGTGAAATTTTCCGGAGATAGCCTACTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCTAAAGTTATTCAAGTGAAATTTTCCGGAGATAGCCTACTCTT  850

seq1  TTGCATGGCAGTGATGGGTAAACTCTGAATTGCAACAACTTCAGAGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGGCAGTGATGGGTAAACTCTGAATTGCAACAACTTCAGAGATTT  900

seq1  CATCCTAGGATTGCTTCTTACTGCTGATATGGATAATGACTCCTGGGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGGATTGCTTCTTACTGCTGATATGGATAATGACTCCTGGGCAC  950

seq1  CAGCCCACCCTATTGAGGAAACTATTGAGCAAACTTCCTACAGATCAATG  1000
      ||||||| |||||||| ||||||| ||||||||||||||||| |||||||
seq2  CAGCCCA-CCTATTGA-GAAACTA-TGAGCAAACTTCCTACAAATCAATG  997

seq1  TAAAGATGATCTTTCCTGGATTCATGCTTTTTATATGAATTGTTGATGTT  1050
      | ||||||||||||||| || ||||||||||||||||||||| |||||||
seq2  T-AAGATGATCTTTCCT-GAATCATGCTTTTTATATGAATTG-TGATGTT  1044

seq1  ATAAAATTGTTTATTTGATTCAAATAATTTTAAAAAAGAAAGTTTTAGGG  1100
      ||||| |   |||||||||||||||||||||  ||||||||  |||||| 
seq2  ATAAACT--GTTATTTGATTCAAATAATTTT--AAAAGAAAAGTTTAGGC  1090

seq1  CATGGTTTTACTTGTTTTGCCAGAAAGATATAATAAAGTTAGAATCAAGA  1150
      ||||  ||||  || |||| |||||  ||||||||||||||||||||  |
seq2  CATG--TTTATCTGGTTTG-CAGAAGAATATAATAAAGTTAGAATCAGAA  1137

seq1  CTAGAATGTGCTCA---CTCCTCACAGAATA---GTAAATAAA  1187
      ||||||||||||||   ||||||||| || |    ||||||||
seq2  CTAGAATGTGCTCACATCTCCTCACATAAAATGGCTAAATAAA  1180


| Home | SequenceCutter | Blast | Download |