BAC Information

Click to search

BAC

Clone NameB6Ng01-181J19
Chromosome6 (Build37)
Map Location 8,991,386 - 8,992,533
singlet/doubletsinglet
Overlap geneNxph1
Upstream geneCol28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181J19.bB6Ng01-181J19.g
ACCGA007727GA007728
length1,1451,160
definitionB6Ng01-181J19.b B6Ng01-181J19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcttctttgtctaatacggctctgagctaccgtgttgataact
catcaggaatttccccacagtaattttccaaatgagactacacagacgtt
ttctactaattgaaatccagcaaaatcagacctaagaaccacaccccttt
cattaatgactagggaaaccgtttctgctgcataggagaagaaggcaagg
ccactttgaatagcagcttcgtactctttaaagatttcagctggattcaa
tttcacaaggaagggaccgcctcagccacacctgccttggcttttcttga
atgggttctgggccagcatgcctctaacctctgtgctgactggaaaacag
gcaggagaagctcagacagtccagagttaccatcaccatgttgtctttgg
ctgtcactggtatctcagctgcaatcatctgccccttttgttaggagtaa
catatattctcatgaaatggtgacagtaaatgtgactttggcatatagag
gccatagcaggtccactcactcagaagggggagctgccctaatgctcgaa
attggtacttcatgttttataattctatccatggatttgtgcttttgagt
gagaattctatacagcctactcaatgagcatatttttatattctggccag
gagagaaacaggcttagtggatgaactgatggaggtagcttcttcaaata
gctcattcatttaggatccaactggaaatagtatggctgacatttttcct
gttgaagaagcctagctaccatgccctaaaagagctaaagagcgatacct
gcaactagagaattgcagtgggctgtgagaattaatccagttgtcttttg
ctccacattaatgaccaactattgttgtaagtgatggattggtgagaata
ctctcacaagaagagacgcccctctgtagttcagtttttctgctttgggc
ctttgccacgtagctgacagcgctcacaaggactgtttctttgcctcagt
tctcagagtgcagtgattagctgtgaggagagagggctgtgagtacagga
gcatttcatttttgttggatagacacagagtagcaggttagcaaaggcta
ctcctgtgagaccccttcttcccctctggaaggaagaagtatggc

gaattcaaggctagcctgagctacatcaaatgctctctcaaagattaaca
acaacaacagcaatgatgtatgggggcagtcaggagattgggccagaggg
ccagaagaatgaatggcaatctgcagttggctaggctgggacaagggagg
ggctgggggtaatctctaggaagactagagagcctctagggtaggctccc
aggaatcaatgcatgtgacctttgctaagatgcatagcagtggggataaa
gaacttgaagaggccacttcctgtacccaggtaggacttccagtggaggg
ataaggacacaaacccaccccaaaaaccttcaaccctaaatttgtcctgt
ctaagagaaatgcaatgacaaagagcagacactgagggaatggccaacca
ataacctggagacccatctcagggacaagcaccaatccctgacactatta
atgatactcttctgcttactggcagaagcctagcatggctgtcatctgag
aggctccacatagcatctaattgaaacagatgcagatatccatacccaaa
cactgggaagagcttggagactcttatgaaagagttggaagaagggttaa
aagtcctgaaggggataggaactccacaggaagaccaacagaatcaacta
tcttggacccttgggtgctttcagagactgagccaccagccaagaacaaa
gctggtctggactgaggaccctagcacatatatagaagaaagtcagctaa
gtctccacatggacccccaaccactggagcaggggagctgtccctgaagc
tcttgcctgtctgtggaatctgtttcccaactgggatgccttgtctggcc
tcagtgagagtatgggtctaacaaagcagagacttgatacaccagtgtgg
ttgggatacccaggggaagcccaccctctcagaggaagggggcaggggta
ttgaagagggactctgggagggtgaccagaggagacattgatcaggatgt
aaataataattaatacaaaggattaaaaaataaacggactattctttata
tctgtctattttacctttgcctggctgtaaataatgtatcagaagttggt
tcacataagcttcttctctgaatcagatgaaaatatctcgtcttcaatta
cgtcttcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8991386_8992533
seq2: B6Ng01-181J19.b_44_1188

seq1  GAATTCCTCTTCTTTGTCTAATACGGCTCTGAGCTACCGTGTTGATAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCTTTGTCTAATACGGCTCTGAGCTACCGTGTTGATAACT  50

seq1  CATCAGGAATTTCCCCACAGTAATTTTCCAAATGAGACTACACAGACGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGAATTTCCCCACAGTAATTTTCCAAATGAGACTACACAGACGTT  100

seq1  TTCTACTAATTGAAATCCAGCAAAATCAGACCTAAGAACCACACCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTAATTGAAATCCAGCAAAATCAGACCTAAGAACCACACCCCTTT  150

seq1  CATTAATGACTAGGGAAACCGTTTCTGCTGCATAGGAGAAGAAGGCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATGACTAGGGAAACCGTTTCTGCTGCATAGGAGAAGAAGGCAAGG  200

seq1  CCACTTTGAATAGCAGCTTCGTACTCTTTAAAGATTTCAGCTGGATTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTGAATAGCAGCTTCGTACTCTTTAAAGATTTCAGCTGGATTCAA  250

seq1  TTTCACAAGGAAGGGACCGCCTCAGCCACACCTGCCTTGGCTTTTCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAGGAAGGGACCGCCTCAGCCACACCTGCCTTGGCTTTTCTTGA  300

seq1  ATGGGTTCTGGGCCAGCATGCCTCTAACCTCTGTGCTGACTGGAAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCTGGGCCAGCATGCCTCTAACCTCTGTGCTGACTGGAAAACAG  350

seq1  GCAGGAGAAGCTCAGACAGTCCAGAGTTACCATCACCATGTTGTCTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAAGCTCAGACAGTCCAGAGTTACCATCACCATGTTGTCTTTGG  400

seq1  CTGTCACTGGTATCTCAGCTGCAATCATCTGCCCCTTTTGTTAGGAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTGGTATCTCAGCTGCAATCATCTGCCCCTTTTGTTAGGAGTAA  450

seq1  CATATATTCTCATGAAATGGTGACAGTAAATGTGACTTTGGCATATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTCTCATGAAATGGTGACAGTAAATGTGACTTTGGCATATAGAG  500

seq1  GCCATAGCAGGTCCACTCACTCAGAAGGGGGAGCTGCCCTAATGCTCGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGCAGGTCCACTCACTCAGAAGGGGGAGCTGCCCTAATGCTCGAA  550

seq1  ATTGGTACTTCATGTTTTATAATTCTATCCATGGATTTGTGCTTTTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTACTTCATGTTTTATAATTCTATCCATGGATTTGTGCTTTTGAGT  600

seq1  GAGAATTCTATACAGCCTACTCAATGAGCATATTTTTATATTCTGGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCTATACAGCCTACTCAATGAGCATATTTTTATATTCTGGCCAG  650

seq1  GAGAGAAACAGGCTTAGTGGATGAACTGATGGAGGTAGCTTCTTCAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAACAGGCTTAGTGGATGAACTGATGGAGGTAGCTTCTTCAAATA  700

seq1  GCTCATTCATTTAGGATCCAACTGGAAATAGTATGGCTGACATTTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCATTTAGGATCCAACTGGAAATAGTATGGCTGACATTTTTCCT  750

seq1  GTTGAAGAAGCCTAGCTACCATGCCCTAAAAGAGCTAAAGAGCGATACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGAAGCCTAGCTACCATGCCCTAAAAGAGCTAAAGAGCGATACCT  800

seq1  GCAACTAGAGAATTGCAGTGGGCTGTGAGAATTAATCCAGTTGTCTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAGAGAATTGCAGTGGGCTGTGAGAATTAATCCAGTTGTCTTTTG  850

seq1  CTCCACATTAATGACCAACTATTGTTGTAAGTGATGGATTGGTGAGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATTAATGACCAACTATTGTTGTAAGTGATGGATTGGTGAGAATA  900

seq1  CTCTCACAAGAAAGAGACGCCCCTCTGTAGTTCAGTTTTTCTGCTTT-GG  949
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  CTCTCACAAG-AAGAGACGCCCCTCTGTAGTTCAGTTTTTCTGCTTTGGG  949

seq1  CCTTTGCCACGTAGCTGACAGCGCTCACAA-GACTGTTTCTTTGCCTCAG  998
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTTTGCCACGTAGCTGACAGCGCTCACAAGGACTGTTTCTTTGCCTCAG  999

seq1  TTCTCAGAGTGCAGTGATTAGCTGTGAGGAGGAGAGGGCTGTGAAGTACA  1048
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TTCTCAGAGTGCAGTGATTAGCTGTGAGGA-GAGAGGGCTGTG-AGTACA  1047

seq1  GGAGCAATTTCA-TTTTGTTGGAAATAGACAACAGAGAAAGCAGGGTAGC  1097
      ||||| |||||| |||||||||  |||||| ||||||  |||||| ||||
seq2  GGAGC-ATTTCATTTTTGTTGG--ATAGAC-ACAGAG-TAGCAGGTTAGC  1092

seq1  AAAGGCTACTCCTGTGAAGACCCCTTCTTCCCCCTCT-----GAAGAGAG  1142
      |||||||||||||||| |||||||||||| |||||||     ||||| ||
seq2  AAAGGCTACTCCTGTG-AGACCCCTTCTT-CCCCTCTGGAAGGAAGA-AG  1139

seq1  TATGGC  1148
      ||||||
seq2  TATGGC  1145


| Home | SequenceCutter | Blast | Download |