BAC Information

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BAC

Clone NameB6Ng01-182H23
Chromosome6 (Build37)
Map Location 60,702,782 - 60,703,899
singlet/doubletsinglet
Overlap geneSnca
Upstream geneEG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726
Downstream geneENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182H23.bB6Ng01-182H23.g
ACCGA008369GA008370
length1,1781,122
definitionB6Ng01-182H23.b B6Ng01-182H23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcttagagaaaattgtctcttcctctcccagcagatatattt
tacctatggccacatagctagaggtgaaattttgtgcccaactcccatct
ccatgttgaggcttggtctggcttgggtttacaacggttttgtgtgtact
gttgcaaccacacaagagttcatcagttcagatgctctaatgtctacagg
agatagtttcctttcagtctttctctgactgtttcttataccttctccac
ttctcacttctcactgattgttaagcctttacaagagagggtgttgtata
tatgctccatttagaaataatatttttgaagtccattattccatgcatct
tgaccagttgagattcttccagttaatcactgtgtattgcatatagaatt
ctctgaaatgaaggcttaaagatgcattgatctatggatataataataaa
acattagtcaatttagtaccatttttatatagcaaaataatagtagtggg
ttttccactagggcctatgacctctgaagctataagttctggaccggaca
aatgtgcagtgtatggattttatcttgtggagcggagcttaaatccaagc
agaaagtagttggctattacacgctctctccctccatgcctgtgacacta
ttgctccaataagcctgtcttacaaggccactcattacaatagctcacgg
agtgtcctagttaggattttgcttctttgaacagatacatgaccaaggca
actcttataaggacaacatgtaattggggctagcttataggttcagaggt
tcagtccattatcatcaaggttggagcatggcagcatccaagtagccatg
gttcagcagaactgagagttctacatcttcatctgaaggctgctatgaga
gtctaggcttcacacagctagaaggtcttaaagcccagtcccacagtgca
tactttctccaacaatgcaacacctcctaatagtgcactccctaggccag
catattcaaactaccacactggactcacagcttaatactgtttctctact
tttctccataagtagctgccacagcaacttccacactaaccagaaggcat
gaacctcaagtcaggtagtcatgattgtcaagtgatgaactcagtatatg
ttcttcagacaaaatccacattctcatg
gaattcccacattctcaaagcatttgctttcatgggttgcttcaagtagc
aagacatctttttaaagtgttgaggacaaggctgtagattttgctgtata
aaaagatgctgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaagaaaagaaggaaggaaggaaggaattaagaaaaaagaagctcc
gtttacaccagtattacatgactttatttacaaatggatactattctgtc
tttctgctggcagctttactgtctgcttgctcaatcttctactgatctcc
ttgctagactttagacactttatccatttgatgtaatcttctcagaagac
caaggctgcagttacagtccacattcaatatcttattcttttcctttatt
ttgaacataagtaacacttgtctctaagtaacaaggtcaaggtttttgct
ttatttctgcctccctcaaaacatttctcttcctctctacaagtttcaaa
cttattcacaaaggaatattgcaatacggatgctattgtccgcgtttctt
cctggaacaagtgttaattgatctctttgggtctatgtgtagagaggagt
tgggacctaggaaaggtattatctggggagttcccttgtccttggaacag
aacaaagagatgctgcctacaaaggctttacctccccagggcttctctgt
ggctagactcaattacagctggagaagctgtggcctatgtgctcccaagg
ccatttgacaagatagtcagctgtttattcttgtttcttcccttgtacct
gtactcctcagaaaaacattcttcgaataagtgacacatttaatctgcaa
tcttcaaagggcatagtgtgttcaaacacaaaaataaatgagacatgcaa
tttctgaaatcgacttacagcgatatcccatggggagtgtactccaaacc
atccacccaggctcattgctctttctaggcaagagccattacagagagca
cagctggaaaacctggaaaaacagctttcctagcatttgtgctgtagagc
tttttcttactactaaggtgacattatagtacttaccaggagtctataaa
taggactagaatattttttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_60702782_60703899
seq2: B6Ng01-182H23.g_63_1184 (reverse)

seq1  CTCAAAAAATATCTTAGT-CTATTTATAGACTC--TGTAAGTACTATAAT  47
      ||||||||||||  |||| ||||||||||||||   ||||||||||||||
seq2  CTCAAAAAATATTCTAGTCCTATTTATAGACTCCTGGTAAGTACTATAAT  50

seq1  GTCACCTAAGTAGGTAAG-AAAAGCTCTACAACCACAAATGCTAGGGAAA  96
      ||||||| |||| ||||| ||||||||||| | ||||||||||| |||||
seq2  GTCACCTTAGTA-GTAAGAAAAAGCTCTAC-AGCACAAATGCTA-GGAAA  97

seq1  GCTG-TTTTCCAGG-TTTCCAGCTGTGCTCTCTGTAATGGCTCTTGCCTA  144
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTTCCAGGTTTTCCAGCTGTGCTCTCTGTAATGGCTCTTGCCTA  147

seq1  G-AAGAGCAATGAGCCTGGGTGGATGGTTTGGAGTACACT-CCCATGGGA  192
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAAGAGCAATGAGCCTGGGTGGATGGTTTGGAGTACACTCCCCATGGGA  197

seq1  TATCGCTGTAAGTCGATTTCAGAAATTGCATTGTCTCATTTATTTTTGTG  242
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATCGCTGTAAGTCGATTTCAGAAATTGCA-TGTCTCATTTATTTTTGTG  246

seq1  TTTGAACACACTATGCCCTTTGAAGATTGCAGATTAAATGTGTCACTTAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACACACTATGCCCTTTGAAGATTGCAGATTAAATGTGTCACTTAT  296

seq1  TCGAAGAATGTTTTTCTGAGGAGTACAGGTACAAGGGAAGAAACAAGAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGAATGTTTTTCTGAGGAGTACAGGTACAAGGGAAGAAACAAGAAT  346

seq1  AAACAGCTGACTATCTTGTCAAATGGCCTTGGGAGCACATAGGCCACAGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGACTATCTTGTCAAATGGCCTTGGGAGCACATAGGCCACAGC  396

seq1  TTCTCCAGCTGTAATTGAGTCTAGCCACAGAGAAGCCCTGGGGAGGTAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGCTGTAATTGAGTCTAGCCACAGAGAAGCCCTGGGGAGGTAAA  446

seq1  GCCTTTGTAGGCAGCATCTCTTTGTTCTGTTCCAAGGACAAGGGAACTCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTAGGCAGCATCTCTTTGTTCTGTTCCAAGGACAAGGGAACTCC  496

seq1  CCAGATAATACCTTTCCTAGGTCCCAACTCCTCTCTACACATAGACCCAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAATACCTTTCCTAGGTCCCAACTCCTCTCTACACATAGACCCAA  546

seq1  AGAGATCAATTAACACTTGTTCCAGGAAGAAACGCGGACAATAGCATCCG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCAATTAACACTTGTTCCAGGAAGAAACGCGGACAATAGCATCCG  596

seq1  TATTGCAATATTCCTTTGTGAATAAGTTTGAAACTTGTAGAGAGGAAGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAATATTCCTTTGTGAATAAGTTTGAAACTTGTAGAGAGGAAGAG  646

seq1  AAATGTTTTGAGGGAGGCAGAAATAAAGCAAAAACCTTGACCTTGTTACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTGAGGGAGGCAGAAATAAAGCAAAAACCTTGACCTTGTTACT  696

seq1  TAGAGACAAGTGTTACTTATGTTCAAAATAAAGGAAAAGAATAAGATATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAAGTGTTACTTATGTTCAAAATAAAGGAAAAGAATAAGATATT  746

seq1  GAATGTGGACTGTAACTGCAGCCTTGGTCTTCTGAGAAGATTACATCAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGACTGTAACTGCAGCCTTGGTCTTCTGAGAAGATTACATCAAA  796

seq1  TGGATAAAGTGTCTAAAGTCTAGCAAGGAGATCAGTAGAAGATTGAGCAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAAGTGTCTAAAGTCTAGCAAGGAGATCAGTAGAAGATTGAGCAA  846

seq1  GCAGACAGTAAAGCTGCCAGCAGAAAGACAGAATAGTATCCATTTGTAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGTAAAGCTGCCAGCAGAAAGACAGAATAGTATCCATTTGTAAA  896

seq1  TAAAGTCATGTAATACTGGTGTAAACGGAGCTTCTTTTTTCTTAATTCCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCATGTAATACTGGTGTAAACGGAGCTTCTTTTTTCTTAATTCCT  946

seq1  TCCTTCCTTCCTTCTTTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCTTTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  996

seq1  TTTCTTTCTTTCTTTCAGCATCTTTTTATACAGCAAAATCTACAGCCTTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCAGCATCTTTTTATACAGCAAAATCTACAGCCTTG  1046

seq1  TCCTCAACACTTTAAAAAGATGTCTTGCTACTTGAAGCAACCCATGAAAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACACTTTAAAAAGATGTCTTGCTACTTGAAGCAACCCATGAAAG  1096

seq1  CAAATGCTTTGAGAATGTGGGAATTC  1118
      ||||||||||||||||||||||||||
seq2  CAAATGCTTTGAGAATGTGGGAATTC  1122