BAC Information

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BAC

Clone NameB6Ng01-182K06
Chromosome6 (Build37)
Map Location 38,232,546 - 38,321,875
singlet/doubletdoublet
Overlap geneLOC665125, Zc3hav1l, Zc3hav1
Upstream geneDgki, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik
Downstream geneRpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182K06.bB6Ng01-182K06.g
ACCGA008477GA008478
length8971,074
definitionB6Ng01-182K06.b B6Ng01-182K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,321,255 - 38,321,875)(38,232,546 - 38,233,611)
sequence
gaattctacccttggaaaactggacttcaacaaagaaatgagtttcaagg
tgagccaaacatcaagctagttttattaaaagcagaagaaagatggatta
agagagtaaaacagccgggcgtggtggcgcacgcctttaatcccagcact
caggaggcagaggcaggcagatttctgagtttgaggccagcctggtctac
aaagtgagttccaggacagctagggctatacagtgaaaccctgtctcgaa
aagcaaacaaaacaaaaaaaaaaaaaaaaaaaacaaaaaaacaaaaaaaa
aaagaaaagaaaagaaaagaaaaagaaaaaaaaagagagagtaaaacata
cctataggcttacatttttcaaaacctatttttataaggtttctttttaa
aaatcatttattttgcctgcatgcatgtctacatgaggatgttggctttc
ttgaaactggagttatagacagctgtgaactgccaggtgagtacagggaa
ttgaacctgggtcctctgaaagaacagtcagtgctcttgttttgttaata
attaattaaatgaatgaatgctatgctgcataagtatgtgcatgcctgaa
gatggcatcagatgtccctaaagatggttgtgagccaccatgtggttgct
gggaattgaactcagaacctctggaagaccagccagtgcgcttaacctct
gagccatctcaccagcccctaataagggttcttaaactctttaacctccc
ttctagcccaccacccatcagaggtattttaatagtgcaaaggggaatgg
ggacctgtttagaaatagttctttggggtgattccaatctttgttgttca
ggataccagcaattaaatttacatgaatcagcagtggtagccccatc
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgcccggccaggaagaacaccacagaccagaatcttctgc
ggcaaaactttattgcttacatcttcaggagcaagagtgtaagaagcaag
agagagagaaaaacgaaaccccgtcccttttttaggagagttatatttcg
cctaggacgtgtcactccctgattggctgcagcccatcggccgagttgac
gtcacggggaaggcagagcacatggagtggagaaccaccctcggcatatg
cgcagattatttgtttaccacttagaacacagctgtcagcgccatcttgt
aacggcgaatgtgggcgcggctcccaacacccatggttccagaagtcaag
attggatgtcaccaggcccaagccctacagaggctagaggaaggcagtct
gaacacagggaaatagccaataaagacaggcaagatcaactgctttatga
cagcatctgccatgttttcttggctcaattatgccaagatgtgtaaaaga
ctgtgagccaaaagaagattctatctgagacacctccacctttaaagctg
gcagagccaatcggagttgtaactttccttgcttctgctgagatcctgcg
gagtgccctataccttgctggttcctccgaataaatcagaaattcatctt
gtagatacatactggagcatgagtgcacatcaggcaagatgaaaataaaa
tattacctttattattttctttccattttttaagacagggtttcgtgtag
gctcaggctggcctcgactctctgtagttgaaaatgacccttcaactcct
gacattcctgattctacctcccaagtgctgaacagtacagtcggccagca
aatgtggccgtcaataagggttaggtgtatgataggtcaaatggaactcc
caatggcaaaaggtgaaattgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38321255_38321875
seq2: B6Ng01-182K06.b_42_663 (reverse)

seq1  TTTAGGGACATCTGATGCCATCTTCAGGCATGCACATACTTATGCAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGACATCTGATGCCATCTTCAGGCATGCACATACTTATGCAGCAT  50

seq1  AGCATTCATTCATTTAATTAATTATTAACAAAACAAGAGCACTGACTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCATTCATTTAATTAATTATTAACAAAACAAGAGCACTGACTGTT  100

seq1  CTTTCAGAGGACCCAGGTTCAATTCCCTGTACTCACCTGGCAGTTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAGGACCCAGGTTCAATTCCCTGTACTCACCTGGCAGTTCACAG  150

seq1  CTGTCTATAACTCCAGTTTCAAGAAAGCCAACATCCTCATGTAGACATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATAACTCCAGTTTCAAGAAAGCCAACATCCTCATGTAGACATGC  200

seq1  ATGCAGGCAAAATAAATGATTTTTAAAAAGAAACCTTATAAAAATAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCAAAATAAATGATTTTTAAAAAGAAACCTTATAAAAATAGGTT  250

seq1  TTGAAAAATGTAAGCCTATAGGTATGTTTTACTCTCTCTTTTTTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAATGTAAGCCTATAGGTATGTTTTACTCTCTCTTTTTTTTTCTT  300

seq1  TTTCTTTTCTTTTCTTTTCTTTTTTTTTTTGTTTTTTTG-TTTTTTTTTT  349
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTCTTTTCTTTTCTTTTCTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTT  350

seq1  TTTTTTTTTGTTTTGTTTGCTTTTCGAGACAGGGTTTCACTGTATAGCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTTTTGTTTGCTTTTCGAGACAGGGTTTCACTGTATAGCCC  400

seq1  TAGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAA  450

seq1  ATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACC  500

seq1  ACGCCCGGCTGTTTTACTCTCTTAATCCATCTTTCTTCTGCTTTTAATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCGGCTGTTTTACTCTCTTAATCCATCTTTCTTCTGCTTTTAATAA  550

seq1  AACTAGCTTGATGTTTGGCTCACCTTGAAACTCATTTCTTTGTTGAAGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCTTGATGTTTGGCTCACCTTGAAACTCATTTCTTTGTTGAAGTC  600

seq1  CAGTTTTCCAAGGGTAGAATTC  621
      ||||||||||||||||||||||
seq2  CAGTTTTCCAAGGGTAGAATTC  622

seq1: chr6_38232546_38233611
seq2: B6Ng01-182K06.g_59_1132

seq1  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50

seq1  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100

seq1  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150

seq1  CGCGTTCTCACGCCCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTCTCACGCCCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGC  200

seq1  GGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGTAAGAAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGTAAGAAGCAAG  250

seq1  AGAGAGAGAAAAACGAAACCCCGTCCCTTTTTTAGGAGAGTTATATTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAAACGAAACCCCGTCCCTTTTTTAGGAGAGTTATATTTCG  300

seq1  CCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGAC  350

seq1  GTCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCATATG  400

seq1  CGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGT  450

seq1  AACGGCGAATGTGGGCGCGGCTCCCAACACCCATGGTTCCAGAAGTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCGAATGTGGGCGCGGCTCCCAACACCCATGGTTCCAGAAGTCAAG  500

seq1  ATTGGATGTCACCAGGCCCAAGCCCTACAGAGGCTAGAGGAAGGCAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGTCACCAGGCCCAAGCCCTACAGAGGCTAGAGGAAGGCAGTCT  550

seq1  GAACACAGGGAAATAGCCAATAAAGACAGGCAAGATCAACTGCTTTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGGGAAATAGCCAATAAAGACAGGCAAGATCAACTGCTTTATGA  600

seq1  CAGCATCTGCCATGTTTTCTTGGCTCAATTATGCCAAGATGTGTAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTGCCATGTTTTCTTGGCTCAATTATGCCAAGATGTGTAAAAGA  650

seq1  CTGTGAGCCAAAAGAAGATTCTATCTGAGACACCTCCACCTTTAAAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCCAAAAGAAGATTCTATCTGAGACACCTCCACCTTTAAAGCTG  700

seq1  GCAGAGCCAATCGGAGTTGTAACTTTCCTTGCTTCTGCTGAGATCCTGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCCAATCGGAGTTGTAACTTTCCTTGCTTCTGCTGAGATCCTGCG  750

seq1  GAGTGCCCTATACCTTGCTGGTTCCTCCGAATAAATCAGAAATTCATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCCTATACCTTGCTGGTTCCTCCGAATAAATCAGAAATTCATCTT  800

seq1  GTAGATACATACTGGAGCATGAGTGCACATCAGGCAAGATGAAAATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATACATACTGGAGCATGAGTGCACATCAGGCAAGATGAAAATAAAA  850

seq1  TATTACCTTTATTATTTTCTTTCCATTTTTTAAGACAGGGTTTCGTGTA-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATTACCTTTATTATTTTCTTTCCATTTTTTAAGACAGGGTTTCGTGTAG  900

seq1  GCTCAGGCTGGCCTCGACTCTCTGTAGTTGAAAATGA-CCTTCAACTCCT  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTCAGGCTGGCCTCGACTCTCTGTAGTTGAAAATGACCCTTCAACTCCT  950

seq1  GACATTCCTGATTCTACCTCCCAAGTGCTG-ACAGTACAGTCGCCCAGCA  997
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GACATTCCTGATTCTACCTCCCAAGTGCTGAACAGTACAGTCGGCCAGCA  1000

seq1  AATGTTGCCGTC-ATAA-GGTTA-GTGTATGATAAGGTCACATGGAACTT  1044
      ||||| |||||| |||| ||||| ||||||||| |||||| |||||||| 
seq2  AATGTGGCCGTCAATAAGGGTTAGGTGTATGAT-AGGTCAAATGGAACTC  1049

seq1  CCCAT-GCAAAA-GTG-AATTGAGG  1066
      || || |||||| ||| ||||||||
seq2  CCAATGGCAAAAGGTGAAATTGAGG  1074