BAC Information

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BAC

Clone NameB6Ng01-182L16
Chromosome6 (Build37)5 (Build37)
Map Location 87,584,928 - 87,585,356106,703,098 - 106,703,382
singlet/doubletsingletsinglet
Overlap gene2010301N04Rik
Upstream geneMxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1
Downstream gene1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182L16.bB6Ng01-182L16.g
ACCGA008543GA008544
length263285
definitionB6Ng01-182L16.b B6Ng01-182L16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,584,928 - 87,585,356)(106,703,098 - 106,703,382)
sequence
taacaatgttctattggtttcttaaaagttttatagctttaaattttaca
tttgagtcagtagtccattttaagttgacttttaaatgcagagtaagatt
ctgtgtgaagtttttatttttgttttatttatgttagctgtctagctgaa
ccaggaccactgtttaaaatgctatctttcttccaatggatgtttatgta
cctctggtaagtgtgtatgtgagtgtgtgcaagtatgtgaatgagtgagt
gtgtgagtatgca
tgttttgtcagcctccatgaagtcagacaaggagctgaccaccaccagcc
tgaaatatagcgctaaccttgaggaagaccacagaggacgtggcaccaag
tcccctccctaaccaagacagctggtgggagagagatctgtcttttcaat
ggtgtggcattggattcattaaccttactccaaggctcaggaatagctgg
ctaacacaaaacagactccatgttttgctttggtttggtttggtttggtt
tgcttggtttggtttttgggttttttttttttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87584928_87585356
seq2: B6Ng01-182L16.b_160_312 (reverse)

seq1  TGCATACTCACACACTCACACATGCACATTCACACATATTCACATTCACA  50
      ||||||||||||||||||| ||| |||||            || | ||||
seq2  TGCATACTCACACACTCACTCATTCACAT------------ACTTGCACA  38

seq1  CACTCACACACATACACACATGCACATATAAACTCACACATTCATTCACA  100
      ||||    ||||||||||| | | || |   ||  | |||| ||||   |
seq2  CACT----CACATACACACTTAC-CAGAGGTACATAAACATCCATTGGAA  83

seq1  CACACA---CATTCTCTCTCTCCCTCTCCCTCCCCTGCTCCCTCTCCCTC  147
       | | |   |||| |                 |  || |||   | |  |
seq2  GAAAGATAGCATTTT--------------AAACAGTGGTCCTGGTTCAGC  119

seq1  TCCCCA-CTAGGATAAAGCTTCATTTGTAATCAGACACAGAAACAGATTA  196
      |   || |||  |||||           || || | | | |||       
seq2  TAGACAGCTAACATAAA---------TAAAACAAAAATAAAAA-------  153

seq1  ATAGCAACAATAAGAAAGTAGAATAAATACAATAACTAGATGAAGCTTAT  246
                                                        
seq2  --------------------------------------------------  153

seq1  GAATTATTAAGGACTTTTCTATTTGCTATCTTTGAAGACAGATAGTGACT  296
                                                        
seq2  --------------------------------------------------  153

seq1  AGTGAAACATGATCTAAATGTATATGCTTTTTTTGTTGATAATAAGCAAG  346
                                                        
seq2  --------------------------------------------------  153

seq1  CACAGCTTCATGGTACAAGAGAGATTTTCTTTACATGTCCAGTGTTGAAT  396
                                                        
seq2  --------------------------------------------------  153

seq1  GCTGTAATTATATTAAAATCTCAAAAATAAAAA  429
                                       
seq2  ---------------------------------  153

seq1: chr5_106703098_106703382
seq2: B6Ng01-182L16.g_72_356 (reverse)

seq1  GAAAAAAAAAAAAAACCCAAAAACCAAACCAAGCAAACCAAACCAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAAAACCCAAAAACCAAACCAAGCAAACCAAACCAAACCA  50

seq1  AACCAAAGCAAAACATGGAGTCTGTTTTGTGTTAGCCAGCTATTCCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGCAAAACATGGAGTCTGTTTTGTGTTAGCCAGCTATTCCTGAG  100

seq1  CCTTGGAGTAAGGTTAATGAATCCAATGCCACACCATTGAAAAGACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGTAAGGTTAATGAATCCAATGCCACACCATTGAAAAGACAGAT  150

seq1  CTCTCTCCCACCAGCTGTCTTGGTTAGGGAGGGGACTTGGTGCCACGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCACCAGCTGTCTTGGTTAGGGAGGGGACTTGGTGCCACGTCC  200

seq1  TCTGTGGTCTTCCTCAAGGTTAGCGCTATATTTCAGGCTGGTGGTGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTCTTCCTCAAGGTTAGCGCTATATTTCAGGCTGGTGGTGGTCA  250

seq1  GCTCCTTGTCTGACTTCATGGAGGCTGACAAAACA  285
      |||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGTCTGACTTCATGGAGGCTGACAAAACA  285